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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 447, 536 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 484 |
| AccBSI | CCGCTC | 1 cut(s) | 296 |
| AccII | CGCG | 2 cut(s) | 423, 773 |
| AclWI | GGATC | 1 cut(s) | 323 |
| AcoI | YGGCCR | 1 cut(s) | 109 |
| AcuI | CTGAAG | 1 cut(s) | 765 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 148, 172, 352, 484, 766, 832 |
| AgsI | TTSAA | 4 cut(s) | 170, 527, 796, 845 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 297 |
| AjnI | CCWGG | 3 cut(s) | 678, 783, 831 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 219, 251 |
| AluBI | AGCT | 8 cut(s) | 437, 508, 607, 707, 712, 722, 743, 791 |
| AluI | AGCT | 8 cut(s) | 437, 508, 607, 707, 712, 722, 743, 791 |
| Alw26I | GTCTC | 3 cut(s) | 272, 284, 773 |
| AlwI | GGATC | 1 cut(s) | 323 |
| Ama87I | CYCGRG | 2 cut(s) | 351, 738 |
| AoxI | GGCC | 9 cut(s) | 61, 109, 210, 306, 675, 735, 768, 852, 862 |
| ApaI | GGGCCC | 1 cut(s) | 310 |
| ApeKI | GCWGC | 8 cut(s) | 137, 508, 548, 590, 803, 806, 809, 812 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 398, 864 |
| AspLEI | GCGC | 2 cut(s) | 378, 419 |
| AsuC2I | CCSGG | 4 cut(s) | 121, 310, 352, 353 |
| AsuHPI | GGTGA | 2 cut(s) | 421, 484 |
| AvaI | CYCGRG | 2 cut(s) | 351, 738 |
| AvaII | GGWCC | 4 cut(s) | 163, 253, 383, 427 |
| AxyI | CCTNAGG | 1 cut(s) | 627 |
| BaeGI | GKGCMC | 2 cut(s) | 310, 541 |
| BanI | GGYRCC | 2 cut(s) | 447, 536 |
| BanII | GRGCYC | 3 cut(s) | 186, 310, 339 |
| BbsI | GAAGAC | 1 cut(s) | 293 |
| BbvI | GCAGC | 8 cut(s) | 124, 495, 535, 602, 790, 793, 796, 799 |
| BceAI | ACGGC | 1 cut(s) | 5 |
| BciT130I | CCWGG | 3 cut(s) | 680, 785, 833 |
| BcnI | CCSGG | 4 cut(s) | 121, 310, 352, 353 |
| BcoDI | GTCTC | 3 cut(s) | 272, 284, 773 |
| BfaI | CTAG | 3 cut(s) | 347, 473, 891 |
| BfmI | CTRYAG | 1 cut(s) | 509 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 146, 545, 683 |
| BlpI | GCTNAGC | 1 cut(s) | 708 |
| Bme1390I | CCNGG | 7 cut(s) | 121, 310, 352, 353, 680, 785, 833 |
| Bme18I | GGWCC | 4 cut(s) | 163, 253, 383, 427 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 297 |
| BmeT110I | CYCGRG | 2 cut(s) | 351, 738 |
| BmiI | GGNNCC | 7 cut(s) | 87, 153, 255, 308, 385, 449, 538 |
| BmrFI | CCNGG | 7 cut(s) | 121, 310, 352, 353, 680, 785, 833 |
| BmrI | ACTGGG | 1 cut(s) | 535 |
| BmsI | GCATC | 1 cut(s) | 641 |
| BmuI | ACTGGG | 1 cut(s) | 535 |
| BpiI | GAAGAC | 1 cut(s) | 293 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 65, 97 |
| BpmI | CTGGAG | 2 cut(s) | 54, 701 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 708 |
| BpuEI | CTTGAG | 3 cut(s) | 78, 200, 702 |
| BpuMI | CCSGG | 4 cut(s) | 121, 310, 352, 353 |
| BsaBI | GATNNNNATC | 1 cut(s) | 102 |
| BsaI | GGTCTC | 2 cut(s) | 284, 773 |
| BsaJI | CCNNGG | 9 cut(s) | 9, 81, 144, 351, 379, 678, 771, 783, 831 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 70, 100 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 148, 172, 352, 484, 766, 832 |
| Bse1I | ACTGG | 3 cut(s) | 64, 177, 541 |
| Bse21I | CCTNAGG | 1 cut(s) | 627 |
| Bse8I | GATNNNNATC | 1 cut(s) | 102 |
| BseBI | CCWGG | 3 cut(s) | 680, 785, 833 |
| BseDI | CCNNGG | 9 cut(s) | 9, 81, 144, 351, 379, 678, 771, 783, 831 |
| BseGI | GGATG | 1 cut(s) | 844 |
| BseJI | GATNNNNATC | 1 cut(s) | 102 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 148, 172, 352, 484, 766, 832 |
| BseMII | CTCAG | 5 cut(s) | 219, 240, 618, 701, 722 |
| BseNI | ACTGG | 3 cut(s) | 64, 177, 541 |
| BseSI | GKGCMC | 2 cut(s) | 310, 541 |
| BseXI | GCAGC | 8 cut(s) | 124, 495, 535, 602, 790, 793, 796, 799 |
| BseYI | CCCAGC | 1 cut(s) | 455 |
| BsgI | GTGCAG | 1 cut(s) | 785 |
| Bsh1236I | CGCG | 2 cut(s) | 423, 773 |
| BshFI | GGCC | 9 cut(s) | 63, 111, 212, 308, 677, 737, 770, 854, 864 |
| BshNI | GGYRCC | 2 cut(s) | 447, 536 |
| BsiHKCI | CYCGRG | 2 cut(s) | 351, 738 |
| BsiSI | CCGG | 3 cut(s) | 121, 310, 352 |
| BslFI | GGGAC | 3 cut(s) | 221, 239, 369 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 148, 172, 352, 484, 766, 832 |
| BsmAI | GTCTC | 3 cut(s) | 272, 284, 773 |
| BsmFI | GGGAC | 3 cut(s) | 221, 239, 369 |
| BsnI | GGCC | 9 cut(s) | 63, 111, 212, 308, 677, 737, 770, 854, 864 |
| Bso31I | GGTCTC | 2 cut(s) | 284, 773 |
| BsoBI | CYCGRG | 2 cut(s) | 351, 738 |
| Bsp120I | GGGCCC | 1 cut(s) | 306 |
| Bsp1286I | GDGCHC | 4 cut(s) | 186, 310, 339, 541 |
| Bsp143I | GATC | 1 cut(s) | 328 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 708 |
| BspANI | GGCC | 9 cut(s) | 63, 111, 212, 308, 677, 737, 770, 854, 864 |
| BspCNI | CTCAG | 5 cut(s) | 218, 241, 619, 700, 721 |
| BspFNI | CGCG | 2 cut(s) | 423, 773 |
| BspLI | GGNNCC | 7 cut(s) | 87, 153, 255, 308, 385, 449, 538 |
| BspMAI | CTGCAG | 1 cut(s) | 513 |
| BspPI | GGATC | 1 cut(s) | 323 |
| BspT107I | GGYRCC | 2 cut(s) | 447, 536 |
| BspTNI | GGTCTC | 2 cut(s) | 284, 773 |
| BsrBI | CCGCTC | 1 cut(s) | 296 |
| BsrI | ACTGG | 3 cut(s) | 64, 177, 541 |
| BssECI | CCNNGG | 9 cut(s) | 9, 81, 144, 351, 379, 678, 771, 783, 831 |
| BssMI | GATC | 1 cut(s) | 328 |
| BssT1I | CCWWGG | 2 cut(s) | 144, 379 |
| Bst2UI | CCWGG | 3 cut(s) | 680, 785, 833 |
| Bst4CI | ACNGT | 3 cut(s) | 235, 283, 655 |
| Bst6I | CTCTTC | 3 cut(s) | 741, 771, 840 |
| BstC8I | GCNNGC | 7 cut(s) | 65, 324, 421, 513, 517, 714, 768 |
| BstDEI | CTNAG | 7 cut(s) | 205, 249, 574, 627, 687, 708, 856 |
| BstDSI | CCRYGG | 1 cut(s) | 771 |
| BstEII | GGTNACC | 1 cut(s) | 4 |
| BstF5I | GGATG | 1 cut(s) | 844 |
| BstFNI | CGCG | 2 cut(s) | 423, 773 |
| BstHHI | GCGC | 2 cut(s) | 378, 419 |
| BstKTI | GATC | 1 cut(s) | 331 |
| BstMAI | GTCTC | 3 cut(s) | 272, 284, 773 |
| BstMBI | GATC | 1 cut(s) | 328 |
| BstNI | CCWGG | 3 cut(s) | 680, 785, 833 |
| BstNSI | RCATGY | 1 cut(s) | 651 |
| BstPI | GGTNACC | 1 cut(s) | 4 |
| BstSCI | CCNGG | 7 cut(s) | 119, 308, 350, 351, 678, 783, 831 |
| BstSFI | CTRYAG | 1 cut(s) | 509 |
| BstSLI | GKGCMC | 2 cut(s) | 310, 541 |
| BstUI | CGCG | 2 cut(s) | 423, 773 |
| BstV1I | GCAGC | 8 cut(s) | 124, 495, 535, 602, 790, 793, 796, 799 |
| BstV2I | GAAGAC | 1 cut(s) | 293 |
| Bsu36I | CCTNAGG | 1 cut(s) | 627 |
| BsuRI | GGCC | 9 cut(s) | 63, 111, 212, 308, 677, 737, 770, 854, 864 |
| BtgI | CCRYGG | 1 cut(s) | 771 |
| BtsCI | GGATG | 1 cut(s) | 844 |
| BtsIMutI | CAGTG | 1 cut(s) | 651 |
| Cac8I | GCNNGC | 7 cut(s) | 65, 324, 421, 513, 517, 714, 768 |
| CfoI | GCGC | 2 cut(s) | 378, 419 |
| Cfr42I | CCGCGG | 1 cut(s) | 774 |
| Cfr9I | CCCGGG | 1 cut(s) | 351 |
| CseI | GACGC | 3 cut(s) | 53, 506, 623 |
| CviAII | CATG | 4 cut(s) | 391, 431, 479, 648 |
| DdeI | CTNAG | 7 cut(s) | 205, 249, 574, 627, 687, 708, 856 |
| DpnI | GATC | 1 cut(s) | 330 |
| DpnII | GATC | 1 cut(s) | 328 |
| DriI | GACNNNNNGTC | 1 cut(s) | 297 |
| EaeI | YGGCCR | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 3 cut(s) | 741, 771, 840 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 297 |
| EarI | CTCTTC | 3 cut(s) | 741, 771, 840 |
| EciI | GGCGGA | 3 cut(s) | 144, 554, 851 |
| Eco130I | CCWWGG | 2 cut(s) | 144, 379 |
| Eco147I | AGGCCT | 1 cut(s) | 864 |
| Eco24I | GRGCYC | 3 cut(s) | 186, 310, 339 |
| Eco31I | GGTCTC | 2 cut(s) | 284, 773 |
| Eco47I | GGWCC | 4 cut(s) | 163, 253, 383, 427 |
| Eco57I | CTGAAG | 1 cut(s) | 765 |
| Eco81I | CCTNAGG | 1 cut(s) | 627 |
| Eco88I | CYCGRG | 2 cut(s) | 351, 738 |
| Eco91I | GGTNACC | 1 cut(s) | 4 |
| EcoO109I | RGGNCCY | 4 cut(s) | 163, 253, 383, 676 |
| EcoO65I | GGTNACC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 3 cut(s) | 678, 783, 831 |
| EcoT14I | CCWWGG | 2 cut(s) | 144, 379 |
| EcoT38I | GRGCYC | 3 cut(s) | 186, 310, 339 |
| ErhI | CCWWGG | 2 cut(s) | 144, 379 |
| FaeI | CATG | 4 cut(s) | 394, 434, 482, 651 |
| FaiI | YATR | 7 cut(s) | 392, 432, 480, 649, 660, 872, 882 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 696, 728 |
| FaqI | GGGAC | 3 cut(s) | 221, 239, 369 |
| FatI | CATG | 4 cut(s) | 390, 430, 478, 647 |
| FauI | CCCGC | 4 cut(s) | 72, 327, 428, 888 |
| FokI | GGATG | 1 cut(s) | 851 |
| FriOI | GRGCYC | 3 cut(s) | 186, 310, 339 |
| FspBI | CTAG | 3 cut(s) | 347, 473, 891 |
| GlaI | GCGC | 2 cut(s) | 377, 418 |
| GsaI | CCCAGC | 1 cut(s) | 459 |
| GsuI | CTGGAG | 2 cut(s) | 54, 701 |
| HaeIII | GGCC | 9 cut(s) | 63, 111, 212, 308, 677, 737, 770, 854, 864 |
| HapII | CCGG | 3 cut(s) | 121, 310, 352 |
| HgaI | GACGC | 3 cut(s) | 53, 506, 623 |
| HhaI | GCGC | 2 cut(s) | 378, 419 |
| Hin1II | CATG | 4 cut(s) | 394, 434, 482, 651 |
| Hin6I | GCGC | 2 cut(s) | 376, 417 |
| HinP1I | GCGC | 2 cut(s) | 376, 417 |
| HindIII | AAGCTT | 1 cut(s) | 789 |
| HinfI | GANTC | 2 cut(s) | 203, 442 |
| HpaII | CCGG | 3 cut(s) | 121, 310, 352 |
| HphI | GGTGA | 2 cut(s) | 421, 484 |
| Hpy188I | TCNGA | 7 cut(s) | 130, 250, 441, 585, 640, 690, 729 |
| Hpy188III | TCNNGA | 8 cut(s) | 71, 95, 269, 332, 386, 473, 527, 554 |
| Hpy99I | CGWCG | 3 cut(s) | 47, 500, 821 |
| HpyAV | CCTTC | 4 cut(s) | 42, 176, 854, 875 |
| HpyCH4III | ACNGT | 3 cut(s) | 235, 283, 655 |
| HpyCH4IV | ACGT | 1 cut(s) | 396 |
| HpyCH4V | TGCA | 4 cut(s) | 196, 511, 651, 766 |
| HpyF3I | CTNAG | 7 cut(s) | 205, 249, 574, 627, 687, 708, 856 |
| HpySE526I | ACGT | 1 cut(s) | 396 |
| Hsp92II | CATG | 4 cut(s) | 394, 434, 482, 651 |
| HspAI | GCGC | 2 cut(s) | 376, 417 |
| KspI | CCGCGG | 1 cut(s) | 774 |
| Kzo9I | GATC | 1 cut(s) | 328 |
| LmnI | GCTCC | 2 cut(s) | 91, 459 |
| Lsp1109I | GCAGC | 8 cut(s) | 124, 495, 535, 602, 790, 793, 796, 799 |
| LweI | GCATC | 1 cut(s) | 641 |
| MaeI | CTAG | 3 cut(s) | 347, 473, 891 |
| MaeII | ACGT | 1 cut(s) | 396 |
| MaeIII | GTNAC | 1 cut(s) | 4 |
| MalI | GATC | 1 cut(s) | 330 |
| MbiI | CCGCTC | 1 cut(s) | 296 |
| MboI | GATC | 1 cut(s) | 328 |
| MboII | GAAGA | 5 cut(s) | 236, 293, 758, 788, 857 |
| MhlI | GDGCHC | 4 cut(s) | 186, 310, 339, 541 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MmeI | TCCRAC | 2 cut(s) | 62, 465 |
| MroXI | GAANNNNTTC | 2 cut(s) | 398, 864 |
| MspA1I | CMGCKG | 2 cut(s) | 209, 773 |
| MspI | CCGG | 3 cut(s) | 121, 310, 352 |
| MspR9I | CCNGG | 7 cut(s) | 121, 310, 352, 353, 680, 785, 833 |
| MvaI | CCWGG | 3 cut(s) | 680, 785, 833 |
| MvnI | CGCG | 2 cut(s) | 423, 773 |
| NciI | CCSGG | 4 cut(s) | 121, 310, 352, 353 |
| NdeII | GATC | 1 cut(s) | 328 |
| NlaIII | CATG | 4 cut(s) | 394, 434, 482, 651 |
| NlaIV | GGNNCC | 7 cut(s) | 87, 153, 255, 308, 385, 449, 538 |
| NmeAIII | GCCGAG | 6 cut(s) | 62, 87, 545, 628, 643, 779 |
| NspI | RCATGY | 1 cut(s) | 651 |
| PceI | AGGCCT | 1 cut(s) | 864 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 51 |
| PdmI | GAANNNNTTC | 2 cut(s) | 398, 864 |
| PfeI | GAWTC | 1 cut(s) | 442 |
| PflFI | GACNNNGTC | 1 cut(s) | 500 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 484 |
| PleI | GAGTC | 1 cut(s) | 197 |
| PpsI | GAGTC | 1 cut(s) | 197 |
| PpuMI | RGGWCCY | 3 cut(s) | 163, 253, 383 |
| Psp5II | RGGWCCY | 3 cut(s) | 163, 253, 383 |
| Psp6I | CCWGG | 3 cut(s) | 678, 783, 831 |
| PspEI | GGTNACC | 1 cut(s) | 4 |
| PspFI | CCCAGC | 1 cut(s) | 455 |
| PspGI | CCWGG | 3 cut(s) | 678, 783, 831 |
| PspN4I | GGNNCC | 7 cut(s) | 87, 153, 255, 308, 385, 449, 538 |
| PspOMI | GGGCCC | 1 cut(s) | 306 |
| PspPPI | RGGWCCY | 3 cut(s) | 163, 253, 383 |
| PstI | CTGCAG | 1 cut(s) | 513 |
| PsyI | GACNNNGTC | 1 cut(s) | 500 |
| SacII | CCGCGG | 1 cut(s) | 774 |
| Sau3AI | GATC | 1 cut(s) | 328 |
| SchI | GAGTC | 1 cut(s) | 197 |
| ScrFI | CCNGG | 7 cut(s) | 121, 310, 352, 353, 680, 785, 833 |
| SduI | GDGCHC | 4 cut(s) | 186, 310, 339, 541 |
| SfaNI | GCATC | 1 cut(s) | 641 |
| SfcI | CTRYAG | 1 cut(s) | 509 |
| Sfr303I | CCGCGG | 1 cut(s) | 774 |
| SgrBI | CCGCGG | 1 cut(s) | 774 |
| SinI | GGWCC | 4 cut(s) | 163, 253, 383, 427 |
| SmaI | CCCGGG | 1 cut(s) | 353 |
| SmlI | CTYRAG | 3 cut(s) | 93, 179, 717 |
| SmoI | CTYRAG | 3 cut(s) | 93, 179, 717 |
| SrfI | GCCCGGGC | 1 cut(s) | 353 |
| SseBI | AGGCCT | 1 cut(s) | 864 |
| SspMI | CTAG | 3 cut(s) | 347, 473, 891 |
| StuI | AGGCCT | 1 cut(s) | 864 |
| StyD4I | CCNGG | 7 cut(s) | 119, 308, 350, 351, 678, 783, 831 |
| StyI | CCWWGG | 2 cut(s) | 144, 379 |
| TaaI | ACNGT | 3 cut(s) | 235, 283, 655 |
| TaiI | ACGT | 1 cut(s) | 399 |
| TaqI | TCGA | 2 cut(s) | 402, 504 |
| TaqII | GACCGA | 1 cut(s) | 234 |
| TauI | GCSGC | 2 cut(s) | 212, 773 |
| TfiI | GAWTC | 1 cut(s) | 442 |
| TscAI | CASTG | 1 cut(s) | 658 |
| TseI | GCWGC | 8 cut(s) | 137, 508, 548, 590, 803, 806, 809, 812 |
| TspDTI | ATGAA | 3 cut(s) | 114, 407, 447 |
| TspMI | CCCGGG | 1 cut(s) | 351 |
| TspRI | CASTG | 1 cut(s) | 658 |
| Tth111I | GACNNNGTC | 1 cut(s) | 500 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 484 |
| VpaK11BI | GGWCC | 4 cut(s) | 163, 253, 383, 427 |
| XbaI | TCTAGA | 1 cut(s) | 472 |
| XceI | RCATGY | 1 cut(s) | 651 |
| XmaI | CCCGGG | 1 cut(s) | 351 |
| XmnI | GAANNNNTTC | 2 cut(s) | 398, 864 |
| XspI | CTAG | 3 cut(s) | 347, 473, 891 |