Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 760, 2226 |
| Acc36I | ACCTGC | 3 cut(s) | 251, 1726, 1879 |
| Acc65I | GGTACC | 1 cut(s) | 638 |
| AccB1I | GGYRCC | 2 cut(s) | 638, 1153 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 859 |
| AccBSI | CCGCTC | 4 cut(s) | 1672, 1903, 2021, 2356 |
| AccI | GTMKAC | 1 cut(s) | 1254 |
| AclWI | GGATC | 8 cut(s) | 275, 787, 800, 1035, 1085, 1835, 1946, 2495 |
| AcoI | YGGCCR | 2 cut(s) | 182, 673 |
| AcsI | RAATTY | 1 cut(s) | 785 |
| AcuI | CTGAAG | 3 cut(s) | 1320, 1647, 1767 |
| AcyI | GRCGYC | 4 cut(s) | 69, 1173, 1284, 2670 |
| AfaI | GTAC | 8 cut(s) | 640, 702, 890, 929, 950, 1685, 1941, 2166 |
| AfeI | AGCGCT | 1 cut(s) | 1836 |
| AflII | CTTAAG | 1 cut(s) | 2558 |
| AgsI | TTSAA | 8 cut(s) | 992, 1148, 1393, 1418, 1988, 2171, 2320, 2528 |
| AjnI | CCWGG | 8 cut(s) | 212, 582, 641, 1006, 1175, 1915, 2141, 2182 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 789, 821 |
| Alw21I | GWGCWC | 2 cut(s) | 558, 2266 |
| Alw26I | GTCTC | 4 cut(s) | 746, 1336, 2429, 2472 |
| AlwI | GGATC | 8 cut(s) | 275, 787, 800, 1035, 1085, 1835, 1946, 2495 |
| Ama87I | CYCGRG | 2 cut(s) | 689, 1757 |
| Aor51HI | AGCGCT | 1 cut(s) | 1836 |
| ApaI | GGGCCC | 2 cut(s) | 712, 1212 |
| ApoI | RAATTY | 1 cut(s) | 785 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 359, 391, 1352, 1384 |
| AseI | ATTAAT | 1 cut(s) | 2361 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2052 |
| Asp718I | GGTACC | 1 cut(s) | 638 |
| AsuC2I | CCSGG | 2 cut(s) | 551, 2247 |
| AsuHPI | GGTGA | 5 cut(s) | 385, 409, 1624, 1746, 1993 |
| AsuII | TTCGAA | 1 cut(s) | 2601 |
| AvaI | CYCGRG | 2 cut(s) | 689, 1757 |
| AvaII | GGWCC | 8 cut(s) | 112, 850, 1676, 1688, 1727, 1919, 2228, 2508 |
| AxyI | CCTNAGG | 1 cut(s) | 2070 |
| BaeGI | GKGCMC | 2 cut(s) | 712, 1212 |
| BalI | TGGCCA | 1 cut(s) | 184 |
| BamHI | GGATCC | 1 cut(s) | 792 |
| BanI | GGYRCC | 2 cut(s) | 638, 1153 |
| BanII | GRGCYC | 8 cut(s) | 444, 690, 712, 1212, 1273, 1351, 1489, 2266 |
| BbsI | GAAGAC | 1 cut(s) | 1641 |
| Bbv12I | GWGCWC | 2 cut(s) | 558, 2266 |
| BceAI | ACGGC | 7 cut(s) | 100, 451, 675, 688, 931, 1271, 2565 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1352, 1386 |
| BciT130I | CCWGG | 8 cut(s) | 214, 584, 643, 1008, 1177, 1917, 2143, 2184 |
| BciVI | GTATCC | 1 cut(s) | 1301 |
| BcnI | CCSGG | 2 cut(s) | 551, 2247 |
| BcoDI | GTCTC | 4 cut(s) | 746, 1336, 2429, 2472 |
| BfaI | CTAG | 9 cut(s) | 242, 653, 704, 756, 1554, 2039, 2391, 2579, 2591 |
| BfmI | CTRYAG | 3 cut(s) | 1889, 1944, 2541 |
| BfoI | RGCGCY | 1 cut(s) | 1838 |
| BfrI | CTTAAG | 1 cut(s) | 2558 |
| BfuAI | ACCTGC | 3 cut(s) | 251, 1726, 1879 |
| BfuI | GTATCC | 1 cut(s) | 1301 |
| BglII | AGATCT | 1 cut(s) | 238 |
| BlpI | GCTNAGC | 1 cut(s) | 1350 |
| Bme18I | GGWCC | 8 cut(s) | 112, 850, 1676, 1688, 1727, 1919, 2228, 2508 |
| BmeT110I | CYCGRG | 2 cut(s) | 689, 1757 |
| BmrI | ACTGGG | 3 cut(s) | 44, 1227, 1276 |
| BmsI | GCATC | 6 cut(s) | 43, 751, 933, 1432, 2095, 2107 |
| BmuI | ACTGGG | 3 cut(s) | 44, 1227, 1276 |
| BpiI | GAAGAC | 1 cut(s) | 1641 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1316, 1348, 2454, 2486 |
| BpmI | CTGGAG | 2 cut(s) | 605, 2166 |
| Bpu10I | CCTNAGC | 5 cut(s) | 2130, 2265, 2352, 2400, 2625 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1350 |
| Bpu14I | TTCGAA | 1 cut(s) | 2601 |
| BpuEI | CTTGAG | 1 cut(s) | 1848 |
| BpuMI | CCSGG | 2 cut(s) | 551, 2247 |
| Bsa29I | ATCGAT | 1 cut(s) | 279 |
| BsaBI | GATNNNNATC | 1 cut(s) | 979 |
| BsaHI | GRCGYC | 4 cut(s) | 69, 1173, 1284, 2670 |
| BsaI | GGTCTC | 1 cut(s) | 1336 |
| BsaJI | CCNNGG | 5 cut(s) | 486, 1086, 1287, 1530, 1692 |
| BsaWI | WCCGGW | 3 cut(s) | 29, 109, 1729 |
| Bse118I | RCCGGY | 5 cut(s) | 419, 566, 844, 1228, 1477 |
| Bse1I | ACTGG | 9 cut(s) | 39, 92, 640, 1222, 1271, 1591, 1729, 1964, 2673 |
| Bse21I | CCTNAGG | 1 cut(s) | 2070 |
| Bse3DI | GCAATG | 2 cut(s) | 72, 2613 |
| Bse8I | GATNNNNATC | 1 cut(s) | 979 |
| BseBI | CCWGG | 8 cut(s) | 214, 584, 643, 1008, 1177, 1917, 2143, 2184 |
| BseCI | ATCGAT | 1 cut(s) | 279 |
| BseDI | CCNNGG | 5 cut(s) | 486, 1086, 1287, 1530, 1692 |
| BseGI | GGATG | 8 cut(s) | 185, 742, 893, 943, 1297, 1447, 2212, 2514 |
| BseJI | GATNNNNATC | 1 cut(s) | 979 |
| BseMI | GCAATG | 2 cut(s) | 72, 2613 |
| BseMII | CTCAG | 9 cut(s) | 1364, 1449, 2084, 2121, 2279, 2298, 2343, 2414, 2639 |
| BseNI | ACTGG | 9 cut(s) | 39, 92, 640, 1222, 1271, 1591, 1729, 1964, 2673 |
| BsePI | GCGCGC | 2 cut(s) | 1032, 1034 |
| BseRI | GAGGAG | 3 cut(s) | 1340, 2169, 2582 |
| BseSI | GKGCMC | 2 cut(s) | 712, 1212 |
| BseX3I | CGGCCG | 1 cut(s) | 673 |
| BseYI | CCCAGC | 4 cut(s) | 144, 1344, 1455, 2553 |
| BsgI | GTGCAG | 4 cut(s) | 598, 1754, 1797, 1857 |
| Bsh1285I | CGRYCG | 6 cut(s) | 502, 567, 676, 1721, 2376, 2382 |
| BshNI | GGYRCC | 2 cut(s) | 638, 1153 |
| BshVI | ATCGAT | 1 cut(s) | 279 |
| BsiEI | CGRYCG | 6 cut(s) | 502, 567, 676, 1721, 2376, 2382 |
| BsiHKAI | GWGCWC | 2 cut(s) | 558, 2266 |
| BsiHKCI | CYCGRG | 2 cut(s) | 689, 1757 |
| BsiWI | CGTACG | 1 cut(s) | 1683 |
| BslFI | GGGAC | 1 cut(s) | 1370 |
| BsmAI | GTCTC | 4 cut(s) | 746, 1336, 2429, 2472 |
| BsmFI | GGGAC | 1 cut(s) | 1370 |
| Bso31I | GGTCTC | 1 cut(s) | 1336 |
| BsoBI | CYCGRG | 2 cut(s) | 689, 1757 |
| Bsp119I | TTCGAA | 1 cut(s) | 2601 |
| Bsp120I | GGGCCC | 2 cut(s) | 708, 1208 |
| Bsp1286I | GDGCHC | 9 cut(s) | 444, 558, 690, 712, 1212, 1273, 1351, 1489, 2266 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1350 |
| Bsp19I | CCATGG | 2 cut(s) | 486, 1692 |
| Bsp68I | TCGCGA | 3 cut(s) | 222, 2445, 2634 |
| BspCNI | CTCAG | 9 cut(s) | 1363, 1448, 2083, 2122, 2278, 2299, 2344, 2413, 2638 |
| BspDI | ATCGAT | 1 cut(s) | 279 |
| BspMAI | CTGCAG | 2 cut(s) | 1893, 2545 |
| BspMI | ACCTGC | 3 cut(s) | 251, 1726, 1879 |
| BspPI | GGATC | 8 cut(s) | 275, 787, 800, 1035, 1085, 1835, 1946, 2495 |
| BspT104I | TTCGAA | 1 cut(s) | 2601 |
| BspT107I | GGYRCC | 2 cut(s) | 638, 1153 |
| BspTI | CTTAAG | 1 cut(s) | 2558 |
| BspTNI | GGTCTC | 1 cut(s) | 1336 |
| BsrBI | CCGCTC | 4 cut(s) | 1672, 1903, 2021, 2356 |
| BsrDI | GCAATG | 2 cut(s) | 72, 2613 |
| BsrFI | RCCGGY | 5 cut(s) | 419, 566, 844, 1228, 1477 |
| BsrI | ACTGG | 9 cut(s) | 39, 92, 640, 1222, 1271, 1591, 1729, 1964, 2673 |
| BssAI | RCCGGY | 5 cut(s) | 419, 566, 844, 1228, 1477 |
| BssECI | CCNNGG | 5 cut(s) | 486, 1086, 1287, 1530, 1692 |
| BssHII | GCGCGC | 2 cut(s) | 1032, 1034 |
| BssNI | GRCGYC | 4 cut(s) | 69, 1173, 1284, 2670 |
| BssT1I | CCWWGG | 2 cut(s) | 486, 1692 |
| Bst2UI | CCWGG | 8 cut(s) | 214, 584, 643, 1008, 1177, 1917, 2143, 2184 |
| Bst4CI | ACNGT | 2 cut(s) | 500, 1751 |
| Bst6I | CTCTTC | 4 cut(s) | 654, 1467, 1645, 1693 |
| BstACI | GRCGYC | 4 cut(s) | 69, 1173, 1284, 2670 |
| BstAFI | CTTAAG | 1 cut(s) | 2558 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1571 |
| BstBI | TTCGAA | 1 cut(s) | 2601 |
| BstDSI | CCRYGG | 3 cut(s) | 486, 1287, 1692 |
| BstF5I | GGATG | 8 cut(s) | 185, 742, 893, 943, 1297, 1447, 2212, 2514 |
| BstH2I | RGCGCY | 1 cut(s) | 1838 |
| BstMAI | GTCTC | 4 cut(s) | 746, 1336, 2429, 2472 |
| BstMCI | CGRYCG | 6 cut(s) | 502, 567, 676, 1721, 2376, 2382 |
| BstNI | CCWGG | 8 cut(s) | 214, 584, 643, 1008, 1177, 1917, 2143, 2184 |
| BstNSI | RCATGY | 2 cut(s) | 724, 763 |
| BstSFI | CTRYAG | 3 cut(s) | 1889, 1944, 2541 |
| BstSLI | GKGCMC | 2 cut(s) | 712, 1212 |
| BstV2I | GAAGAC | 1 cut(s) | 1641 |
| BstX2I | RGATCY | 2 cut(s) | 238, 792 |
| BstYI | RGATCY | 2 cut(s) | 238, 792 |
| BstZI | CGGCCG | 1 cut(s) | 673 |
| Bsu15I | ATCGAT | 1 cut(s) | 279 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2070 |
| BsuI | GTATCC | 1 cut(s) | 1301 |
| BsuTUI | ATCGAT | 1 cut(s) | 279 |
| BtgI | CCRYGG | 3 cut(s) | 486, 1287, 1692 |
| BtgZI | GCGATG | 3 cut(s) | 819, 837, 1475 |
| BtsCI | GGATG | 8 cut(s) | 185, 742, 893, 943, 1297, 1447, 2212, 2514 |
| BtsI | GCAGTG | 1 cut(s) | 2550 |
| BtsIMutI | CAGTG | 5 cut(s) | 633, 872, 1576, 2304, 2550 |
| BtuMI | TCGCGA | 3 cut(s) | 222, 2445, 2634 |
| BveI | ACCTGC | 3 cut(s) | 251, 1726, 1879 |
| Cfr10I | RCCGGY | 5 cut(s) | 419, 566, 844, 1228, 1477 |
| ClaI | ATCGAT | 1 cut(s) | 279 |
| CseI | GACGC | 6 cut(s) | 77, 1181, 1292, 1796, 2241, 2678 |
| Csp6I | GTAC | 8 cut(s) | 639, 701, 889, 928, 949, 1684, 1940, 2165 |
| CviQI | GTAC | 8 cut(s) | 639, 701, 889, 928, 949, 1684, 1940, 2165 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 760, 2226 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 760, 2226 |
| EaeI | YGGCCR | 2 cut(s) | 182, 673 |
| EagI | CGGCCG | 1 cut(s) | 673 |
| Eam1104I | CTCTTC | 4 cut(s) | 654, 1467, 1645, 1693 |
| EarI | CTCTTC | 4 cut(s) | 654, 1467, 1645, 1693 |
| EciI | GGCGGA | 5 cut(s) | 86, 585, 806, 863, 2245 |
| Ecl136II | GAGCTC | 1 cut(s) | 2264 |
| EclXI | CGGCCG | 1 cut(s) | 673 |
| Eco130I | CCWWGG | 2 cut(s) | 486, 1692 |
| Eco147I | AGGCCT | 1 cut(s) | 2418 |
| Eco24I | GRGCYC | 8 cut(s) | 444, 690, 712, 1212, 1273, 1351, 1489, 2266 |
| Eco31I | GGTCTC | 1 cut(s) | 1336 |
| Eco32I | GATATC | 1 cut(s) | 2236 |
| Eco47I | GGWCC | 8 cut(s) | 112, 850, 1676, 1688, 1727, 1919, 2228, 2508 |
| Eco47III | AGCGCT | 1 cut(s) | 1836 |
| Eco52I | CGGCCG | 1 cut(s) | 673 |
| Eco53kI | GAGCTC | 1 cut(s) | 2264 |
| Eco57I | CTGAAG | 3 cut(s) | 1320, 1647, 1767 |
| Eco81I | CCTNAGG | 1 cut(s) | 2070 |
| Eco88I | CYCGRG | 2 cut(s) | 689, 1757 |
| EcoICRI | GAGCTC | 1 cut(s) | 2264 |
| EcoO109I | RGGNCCY | 4 cut(s) | 708, 709, 1209, 2077 |
| EcoRI | GAATTC | 1 cut(s) | 785 |
| EcoRII | CCWGG | 8 cut(s) | 212, 582, 641, 1006, 1175, 1915, 2141, 2182 |
| EcoRV | GATATC | 1 cut(s) | 2236 |
| EcoT14I | CCWWGG | 2 cut(s) | 486, 1692 |
| EcoT22I | ATGCAT | 1 cut(s) | 744 |
| EcoT38I | GRGCYC | 8 cut(s) | 444, 690, 712, 1212, 1273, 1351, 1489, 2266 |
| ErhI | CCWWGG | 2 cut(s) | 486, 1692 |
| FaqI | GGGAC | 1 cut(s) | 1370 |
| FauI | CCCGC | 7 cut(s) | 208, 254, 849, 1347, 1677, 2014, 2707 |
| FblI | GTMKAC | 1 cut(s) | 1254 |
| FokI | GGATG | 8 cut(s) | 172, 729, 880, 950, 1304, 1454, 2219, 2501 |
| FriOI | GRGCYC | 8 cut(s) | 444, 690, 712, 1212, 1273, 1351, 1489, 2266 |
| FspBI | CTAG | 9 cut(s) | 242, 653, 704, 756, 1554, 2039, 2391, 2579, 2591 |
| GsaI | CCCAGC | 4 cut(s) | 148, 1348, 1459, 2557 |
| GsuI | CTGGAG | 2 cut(s) | 605, 2166 |
| HaeII | RGCGCY | 1 cut(s) | 1838 |
| HgaI | GACGC | 6 cut(s) | 77, 1181, 1292, 1796, 2241, 2678 |
| Hin1I | GRCGYC | 4 cut(s) | 69, 1173, 1284, 2670 |
| HincII | GTYRAC | 1 cut(s) | 1255 |
| HindII | GTYRAC | 1 cut(s) | 1255 |
| HphI | GGTGA | 5 cut(s) | 385, 409, 1624, 1746, 1993 |
| Hpy166II | GTNNAC | 3 cut(s) | 1255, 1754, 2165 |
| Hpy8I | GTNNAC | 3 cut(s) | 1255, 1754, 2165 |
| Hpy99I | CGWCG | 5 cut(s) | 437, 686, 1175, 1364, 2672 |
| HpyAV | CCTTC | 9 cut(s) | 17, 114, 305, 1298, 1763, 1791, 2148, 2513, 2608 |
| HpyCH4III | ACNGT | 2 cut(s) | 500, 1751 |
| HpyCH4IV | ACGT | 1 cut(s) | 681 |
| HpySE526I | ACGT | 1 cut(s) | 681 |
| Hsp92I | GRCGYC | 4 cut(s) | 69, 1173, 1284, 2670 |
| KpnI | GGTACC | 1 cut(s) | 642 |
| KroI | GCCGGC | 3 cut(s) | 844, 1228, 1477 |
| KroNI | GCCGGC | 3 cut(s) | 846, 1230, 1479 |
| LweI | GCATC | 6 cut(s) | 43, 751, 933, 1432, 2095, 2107 |
| MaeI | CTAG | 9 cut(s) | 242, 653, 704, 756, 1554, 2039, 2391, 2579, 2591 |
| MaeII | ACGT | 1 cut(s) | 681 |
| MaeIII | GTNAC | 2 cut(s) | 2337, 2545 |
| MauBI | CGCGCGCG | 1 cut(s) | 1032 |
| MbiI | CCGCTC | 4 cut(s) | 1672, 1903, 2021, 2356 |
| MfeI | CAATTG | 3 cut(s) | 1148, 1339, 2534 |
| MflI | RGATCY | 2 cut(s) | 238, 792 |
| MhlI | GDGCHC | 9 cut(s) | 444, 558, 690, 712, 1212, 1273, 1351, 1489, 2266 |
| MlsI | TGGCCA | 1 cut(s) | 184 |
| MluCI | AATT | 9 cut(s) | 458, 472, 573, 785, 1133, 1148, 1339, 1388, 2534 |
| MluNI | TGGCCA | 1 cut(s) | 184 |
| MlyI | GAGTC | 4 cut(s) | 118, 640, 1631, 1921 |
| MmeI | TCCRAC | 1 cut(s) | 1490 |
| Mox20I | TGGCCA | 1 cut(s) | 184 |
| Mph1103I | ATGCAT | 1 cut(s) | 744 |
| MreI | CGCCGGCG | 1 cut(s) | 844 |
| MroNI | GCCGGC | 3 cut(s) | 844, 1228, 1477 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2052 |
| MscI | TGGCCA | 1 cut(s) | 184 |
| MseI | TTAA | 3 cut(s) | 2010, 2361, 2559 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2115 |
| Msp20I | TGGCCA | 1 cut(s) | 184 |
| MspA1I | CMGCKG | 4 cut(s) | 249, 1354, 1586, 2102 |
| MspCI | CTTAAG | 1 cut(s) | 2558 |
| MunI | CAATTG | 3 cut(s) | 1148, 1339, 2534 |
| MvaI | CCWGG | 8 cut(s) | 214, 584, 643, 1008, 1177, 1917, 2143, 2184 |
| NaeI | GCCGGC | 3 cut(s) | 846, 1230, 1479 |
| NciI | CCSGG | 2 cut(s) | 551, 2247 |
| NcoI | CCATGG | 2 cut(s) | 486, 1692 |
| NgoMIV | GCCGGC | 3 cut(s) | 844, 1228, 1477 |
| NmeAIII | GCCGAG | 2 cut(s) | 1111, 2338 |
| NmuCI | GTSAC | 1 cut(s) | 2545 |
| NruI | TCGCGA | 3 cut(s) | 222, 2445, 2634 |
| NsiI | ATGCAT | 1 cut(s) | 744 |
| NspI | RCATGY | 2 cut(s) | 724, 763 |
| NspV | TTCGAA | 1 cut(s) | 2601 |
| PaeR7I | CTCGAG | 1 cut(s) | 689 |
| PauI | GCGCGC | 2 cut(s) | 1032, 1034 |
| PceI | AGGCCT | 1 cut(s) | 2418 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 678, 687, 1251, 1518, 2293 |
| PdiI | GCCGGC | 3 cut(s) | 846, 1230, 1479 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2052 |
| PfeI | GAWTC | 6 cut(s) | 12, 464, 975, 1203, 1509, 1984 |
| Pfl23II | CGTACG | 1 cut(s) | 1683 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 859 |
| PfoI | TCCNGGA | 2 cut(s) | 582, 2182 |
| Ple19I | CGATCG | 1 cut(s) | 1721 |
| PleI | GAGTC | 4 cut(s) | 118, 640, 1631, 1920 |
| PpsI | GAGTC | 4 cut(s) | 118, 640, 1631, 1920 |
| PshBI | ATTAAT | 1 cut(s) | 2361 |
| Psp124BI | GAGCTC | 1 cut(s) | 2266 |
| Psp6I | CCWGG | 8 cut(s) | 212, 582, 641, 1006, 1175, 1915, 2141, 2182 |
| PspFI | CCCAGC | 4 cut(s) | 144, 1344, 1455, 2553 |
| PspGI | CCWGG | 8 cut(s) | 212, 582, 641, 1006, 1175, 1915, 2141, 2182 |
| PspLI | CGTACG | 1 cut(s) | 1683 |
| PspOMI | GGGCCC | 2 cut(s) | 708, 1208 |
| PspXI | VCTCGAGB | 1 cut(s) | 689 |
| PstI | CTGCAG | 2 cut(s) | 1893, 2545 |
| PsuI | RGATCY | 2 cut(s) | 238, 792 |
| PteI | GCGCGC | 2 cut(s) | 1032, 1034 |
| PvuI | CGATCG | 1 cut(s) | 1721 |
| RruI | TCGCGA | 3 cut(s) | 222, 2445, 2634 |
| RsaI | GTAC | 8 cut(s) | 640, 702, 890, 929, 950, 1685, 1941, 2166 |
| RsaNI | GTAC | 8 cut(s) | 639, 701, 889, 928, 949, 1684, 1940, 2165 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2115 |
| SacI | GAGCTC | 1 cut(s) | 2266 |
| SalI | GTCGAC | 1 cut(s) | 1253 |
| SaqAI | TTAA | 3 cut(s) | 2010, 2361, 2559 |
| SbfI | CCTGCAGG | 1 cut(s) | 1893 |
| SchI | GAGTC | 4 cut(s) | 118, 640, 1631, 1921 |
| SdaI | CCTGCAGG | 1 cut(s) | 1893 |
| SduI | GDGCHC | 9 cut(s) | 444, 558, 690, 712, 1212, 1273, 1351, 1489, 2266 |
| SfaNI | GCATC | 6 cut(s) | 43, 751, 933, 1432, 2095, 2107 |
| SfcI | CTRYAG | 3 cut(s) | 1889, 1944, 2541 |
| Sfr274I | CTCGAG | 1 cut(s) | 689 |
| SfuI | TTCGAA | 1 cut(s) | 2601 |
| SgrAI | CRCCGGYG | 1 cut(s) | 844 |
| SinI | GGWCC | 8 cut(s) | 112, 850, 1676, 1688, 1727, 1919, 2228, 2508 |
| SlaI | CTCGAG | 1 cut(s) | 689 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2115 |
| SmlI | CTYRAG | 3 cut(s) | 689, 1863, 2558 |
| SmoI | CTYRAG | 3 cut(s) | 689, 1863, 2558 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1893 |
| Sse9I | AATT | 9 cut(s) | 458, 472, 573, 785, 1133, 1148, 1339, 1388, 2534 |
| SseBI | AGGCCT | 1 cut(s) | 2418 |
| SspI | AATATT | 1 cut(s) | 2273 |
| SspMI | CTAG | 9 cut(s) | 242, 653, 704, 756, 1554, 2039, 2391, 2579, 2591 |
| SstI | GAGCTC | 1 cut(s) | 2266 |
| StuI | AGGCCT | 1 cut(s) | 2418 |
| StyI | CCWWGG | 2 cut(s) | 486, 1692 |
| TaaI | ACNGT | 2 cut(s) | 500, 1751 |
| TaiI | ACGT | 1 cut(s) | 684 |
| TasI | AATT | 9 cut(s) | 458, 472, 573, 785, 1133, 1148, 1339, 1388, 2534 |
| TatI | WGTACW | 1 cut(s) | 2164 |
| TfiI | GAWTC | 6 cut(s) | 12, 464, 975, 1203, 1509, 1984 |
| Tru1I | TTAA | 3 cut(s) | 2010, 2361, 2559 |
| Tru9I | TTAA | 3 cut(s) | 2010, 2361, 2559 |
| TscAI | CASTG | 5 cut(s) | 640, 872, 1576, 2311, 2550 |
| TseFI | GTSAC | 1 cut(s) | 2545 |
| Tsp45I | GTSAC | 1 cut(s) | 2545 |
| TspDTI | ATGAA | 2 cut(s) | 595, 2379 |
| TspGWI | ACGGA | 4 cut(s) | 457, 735, 1040, 1701 |
| TspRI | CASTG | 5 cut(s) | 640, 872, 1576, 2311, 2550 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 859 |
| Vha464I | CTTAAG | 1 cut(s) | 2558 |
| VpaK11BI | GGWCC | 8 cut(s) | 112, 850, 1676, 1688, 1727, 1919, 2228, 2508 |
| VspI | ATTAAT | 1 cut(s) | 2361 |
| XapI | RAATTY | 1 cut(s) | 785 |
| XceI | RCATGY | 2 cut(s) | 724, 763 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1502, 2680 |
| XhoI | CTCGAG | 1 cut(s) | 689 |
| XmiI | GTMKAC | 1 cut(s) | 1254 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2052 |
| XspI | CTAG | 9 cut(s) | 242, 653, 704, 756, 1554, 2039, 2391, 2579, 2591 |
| Zsp2I | ATGCAT | 1 cut(s) | 744 |