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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1488 |
| AatII | GACGTC | 1 cut(s) | 1371 |
| Acc36I | ACCTGC | 3 cut(s) | 1270, 1357, 1648 |
| Acc65I | GGTACC | 1 cut(s) | 283 |
| AccB1I | GGYRCC | 1 cut(s) | 283 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1822 |
| AccBSI | CCGCTC | 1 cut(s) | 592 |
| AccI | GTMKAC | 1 cut(s) | 420 |
| AcoI | YGGCCR | 2 cut(s) | 685, 711 |
| AcsI | RAATTY | 2 cut(s) | 332, 1577 |
| AcuI | CTGAAG | 4 cut(s) | 450, 771, 783, 885 |
| AcyI | GRCGYC | 3 cut(s) | 573, 1368, 1953 |
| AfaI | GTAC | 3 cut(s) | 285, 744, 1561 |
| AgsI | TTSAA | 4 cut(s) | 548, 653, 1571, 1781 |
| AleI | CACNNNNGTG | 1 cut(s) | 1674 |
| Alw21I | GWGCWC | 8 cut(s) | 40, 120, 166, 237, 522, 619, 1528, 1977 |
| Alw26I | GTCTC | 2 cut(s) | 1165, 1899 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 998 |
| Ama87I | CYCGRG | 1 cut(s) | 930 |
| ApaI | GGGCCC | 3 cut(s) | 354, 403, 953 |
| ApeKI | GCWGC | 9 cut(s) | 755, 758, 1301, 1319, 1352, 1355, 1477, 1514, 1946 |
| ApoI | RAATTY | 2 cut(s) | 332, 1577 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 322, 354 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1923 |
| Asp718I | GGTACC | 1 cut(s) | 283 |
| AspA2I | CCTAGG | 1 cut(s) | 839 |
| AspLEI | GCGC | 9 cut(s) | 379, 676, 681, 937, 1102, 1306, 1427, 1514, 1941 |
| AsuC2I | CCSGG | 3 cut(s) | 349, 1059, 1308 |
| AsuHPI | GGTGA | 2 cut(s) | 699, 1139 |
| AvaI | CYCGRG | 1 cut(s) | 930 |
| AvaII | GGWCC | 3 cut(s) | 338, 1490, 1660 |
| AvrII | CCTAGG | 1 cut(s) | 839 |
| AxyI | CCTNAGG | 1 cut(s) | 1338 |
| BaeGI | GKGCMC | 4 cut(s) | 354, 403, 953, 1064 |
| BamHI | GGATCC | 1 cut(s) | 1075 |
| BanI | GGYRCC | 1 cut(s) | 283 |
| BanII | GRGCYC | 8 cut(s) | 237, 354, 403, 522, 619, 953, 1233, 1528 |
| BauI | CACGAG | 1 cut(s) | 272 |
| Bbv12I | GWGCWC | 8 cut(s) | 40, 120, 166, 237, 522, 619, 1528, 1977 |
| BbvI | GCAGC | 9 cut(s) | 742, 770, 1313, 1331, 1339, 1342, 1489, 1526, 1933 |
| BccI | CCATC | 3 cut(s) | 977, 1534, 1571 |
| BceAI | ACGGC | 1 cut(s) | 1848 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1964, 1998 |
| BciVI | GTATCC | 1 cut(s) | 543 |
| BcnI | CCSGG | 3 cut(s) | 349, 1059, 1308 |
| BcoDI | GTCTC | 2 cut(s) | 1165, 1899 |
| BfaI | CTAG | 3 cut(s) | 840, 909, 1715 |
| BfmI | CTRYAG | 4 cut(s) | 417, 756, 1197, 1475 |
| BfoI | RGCGCY | 2 cut(s) | 938, 1307 |
| BfuAI | ACCTGC | 3 cut(s) | 1270, 1357, 1648 |
| BfuI | GTATCC | 1 cut(s) | 543 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 267 |
| BlnI | CCTAGG | 1 cut(s) | 839 |
| BlpI | GCTNAGC | 2 cut(s) | 991, 1227 |
| BmcAI | AGTACT | 1 cut(s) | 744 |
| Bme18I | GGWCC | 3 cut(s) | 338, 1490, 1660 |
| BmeT110I | CYCGRG | 1 cut(s) | 930 |
| BmiI | GGNNCC | 9 cut(s) | 285, 352, 353, 401, 951, 1077, 1275, 1440, 1491 |
| BmrI | ACTGGG | 1 cut(s) | 1113 |
| BmsI | GCATC | 4 cut(s) | 292, 648, 1115, 1276 |
| BmuI | ACTGGG | 1 cut(s) | 1113 |
| BpmI | CTGGAG | 2 cut(s) | 645, 1772 |
| Bpu10I | CCTNAGC | 1 cut(s) | 521 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 991, 1227 |
| BpuEI | CTTGAG | 3 cut(s) | 1122, 1512, 1893 |
| BpuMI | CCSGG | 3 cut(s) | 349, 1059, 1308 |
| Bsa29I | ATCGAT | 2 cut(s) | 384, 1623 |
| BsaHI | GRCGYC | 3 cut(s) | 573, 1368, 1953 |
| BsaJI | CCNNGG | 9 cut(s) | 56, 216, 682, 839, 945, 1269, 1444, 1445, 1486 |
| BsaWI | WCCGGW | 1 cut(s) | 484 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 601, 631 |
| Bse118I | RCCGGY | 2 cut(s) | 358, 709 |
| Bse1I | ACTGG | 6 cut(s) | 287, 630, 699, 1119, 1317, 1956 |
| Bse21I | CCTNAGG | 1 cut(s) | 1338 |
| Bse3DI | GCAATG | 1 cut(s) | 1245 |
| BseCI | ATCGAT | 2 cut(s) | 384, 1623 |
| BseDI | CCNNGG | 9 cut(s) | 56, 216, 682, 839, 945, 1269, 1444, 1445, 1486 |
| BseGI | GGATG | 2 cut(s) | 493, 1975 |
| BseMI | GCAATG | 1 cut(s) | 1245 |
| BseMII | CTCAG | 9 cut(s) | 535, 558, 1005, 1176, 1194, 1218, 1352, 1871, 1910 |
| BseNI | ACTGG | 6 cut(s) | 287, 630, 699, 1119, 1317, 1956 |
| BseRI | GAGGAG | 2 cut(s) | 609, 1217 |
| BseSI | GKGCMC | 4 cut(s) | 354, 403, 953, 1064 |
| BseX3I | CGGCCG | 1 cut(s) | 711 |
| BseXI | GCAGC | 9 cut(s) | 742, 770, 1313, 1331, 1339, 1342, 1489, 1526, 1933 |
| BseYI | CCCAGC | 2 cut(s) | 887, 1507 |
| BsgI | GTGCAG | 3 cut(s) | 1028, 1071, 1599 |
| Bsh1285I | CGRYCG | 5 cut(s) | 160, 590, 714, 1638, 1644 |
| BshNI | GGYRCC | 1 cut(s) | 283 |
| BshVI | ATCGAT | 2 cut(s) | 384, 1623 |
| BsiEI | CGRYCG | 5 cut(s) | 160, 590, 714, 1638, 1644 |
| BsiHKAI | GWGCWC | 8 cut(s) | 40, 120, 166, 237, 522, 619, 1528, 1977 |
| BsiHKCI | CYCGRG | 1 cut(s) | 930 |
| BsiSI | CCGG | 6 cut(s) | 348, 359, 485, 710, 1058, 1307 |
| BslFI | GGGAC | 7 cut(s) | 275, 439, 683, 1178, 1323, 1356, 1481 |
| BsmAI | GTCTC | 2 cut(s) | 1165, 1899 |
| BsmBI | CGTCTC | 1 cut(s) | 1165 |
| BsmFI | GGGAC | 7 cut(s) | 275, 439, 683, 1178, 1323, 1356, 1481 |
| BsoBI | CYCGRG | 1 cut(s) | 930 |
| Bsp120I | GGGCCC | 3 cut(s) | 350, 399, 949 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 991, 1227 |
| Bsp68I | TCGCGA | 1 cut(s) | 1707 |
| BspCNI | CTCAG | 9 cut(s) | 534, 559, 1004, 1175, 1193, 1219, 1351, 1870, 1909 |
| BspDI | ATCGAT | 2 cut(s) | 384, 1623 |
| BspLI | GGNNCC | 9 cut(s) | 285, 352, 353, 401, 951, 1077, 1275, 1440, 1491 |
| BspMAI | CTGCAG | 3 cut(s) | 760, 1201, 1479 |
| BspMI | ACCTGC | 3 cut(s) | 1270, 1357, 1648 |
| BspQI | GCTCTTC | 1 cut(s) | 904 |
| BspT107I | GGYRCC | 1 cut(s) | 283 |
| BsrBI | CCGCTC | 1 cut(s) | 592 |
| BsrDI | GCAATG | 1 cut(s) | 1245 |
| BsrFI | RCCGGY | 2 cut(s) | 358, 709 |
| BsrI | ACTGG | 6 cut(s) | 287, 630, 699, 1119, 1317, 1956 |
| BssAI | RCCGGY | 2 cut(s) | 358, 709 |
| BssECI | CCNNGG | 9 cut(s) | 56, 216, 682, 839, 945, 1269, 1444, 1445, 1486 |
| BssNI | GRCGYC | 3 cut(s) | 573, 1368, 1953 |
| BssSI | CACGAG | 1 cut(s) | 272 |
| BssT1I | CCWWGG | 2 cut(s) | 682, 839 |
| Bst2BI | CACGAG | 1 cut(s) | 272 |
| Bst4CI | ACNGT | 2 cut(s) | 161, 187 |
| Bst6I | CTCTTC | 3 cut(s) | 503, 904, 1881 |
| BstACI | GRCGYC | 3 cut(s) | 573, 1368, 1953 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 746 |
| BstDSI | CCRYGG | 1 cut(s) | 945 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 663 |
| BstF5I | GGATG | 2 cut(s) | 493, 1975 |
| BstH2I | RGCGCY | 2 cut(s) | 938, 1307 |
| BstHHI | GCGC | 9 cut(s) | 379, 676, 681, 937, 1102, 1306, 1427, 1514, 1941 |
| BstMAI | GTCTC | 2 cut(s) | 1165, 1899 |
| BstMCI | CGRYCG | 5 cut(s) | 160, 590, 714, 1638, 1644 |
| BstNSI | RCATGY | 2 cut(s) | 373, 887 |
| BstSFI | CTRYAG | 4 cut(s) | 417, 756, 1197, 1475 |
| BstSLI | GKGCMC | 4 cut(s) | 354, 403, 953, 1064 |
| BstV1I | GCAGC | 9 cut(s) | 742, 770, 1313, 1331, 1339, 1342, 1489, 1526, 1933 |
| BstX2I | RGATCY | 3 cut(s) | 1075, 1741, 1749 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1408 |
| BstYI | RGATCY | 3 cut(s) | 1075, 1741, 1749 |
| BstZI | CGGCCG | 1 cut(s) | 711 |
| Bsu15I | ATCGAT | 2 cut(s) | 384, 1623 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1338 |
| BsuI | GTATCC | 1 cut(s) | 543 |
| BsuTUI | ATCGAT | 2 cut(s) | 384, 1623 |
| BtgI | CCRYGG | 1 cut(s) | 945 |
| BtgZI | GCGATG | 1 cut(s) | 1092 |
| BtsCI | GGATG | 2 cut(s) | 493, 1975 |
| BtsI | GCAGTG | 2 cut(s) | 1083, 1941 |
| BtsIMutI | CAGTG | 4 cut(s) | 706, 978, 1083, 1941 |
| BtuMI | TCGCGA | 1 cut(s) | 1707 |
| BveI | ACCTGC | 3 cut(s) | 1270, 1357, 1648 |
| CaiI | CAGNNNCTG | 1 cut(s) | 998 |
| CfoI | GCGC | 9 cut(s) | 379, 676, 681, 937, 1102, 1306, 1427, 1514, 1941 |
| Cfr10I | RCCGGY | 2 cut(s) | 358, 709 |
| Cfr42I | CCGCGG | 1 cut(s) | 948 |
| ClaI | ATCGAT | 2 cut(s) | 384, 1623 |
| CseI | GACGC | 4 cut(s) | 581, 680, 1723, 1961 |
| Csp6I | GTAC | 3 cut(s) | 284, 743, 1560 |
| CviAII | CATG | 7 cut(s) | 45, 125, 192, 370, 829, 884, 1994 |
| CviQI | GTAC | 3 cut(s) | 284, 743, 1560 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1488 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1488 |
| EaeI | YGGCCR | 2 cut(s) | 685, 711 |
| EagI | CGGCCG | 1 cut(s) | 711 |
| Eam1104I | CTCTTC | 3 cut(s) | 503, 904, 1881 |
| EarI | CTCTTC | 3 cut(s) | 503, 904, 1881 |
| EciI | GGCGGA | 1 cut(s) | 167 |
| Ecl136II | GAGCTC | 4 cut(s) | 235, 520, 617, 1526 |
| EclXI | CGGCCG | 1 cut(s) | 711 |
| Eco130I | CCWWGG | 2 cut(s) | 682, 839 |
| Eco147I | AGGCCT | 1 cut(s) | 583 |
| Eco24I | GRGCYC | 8 cut(s) | 237, 354, 403, 522, 619, 953, 1233, 1528 |
| Eco47I | GGWCC | 3 cut(s) | 338, 1490, 1660 |
| Eco52I | CGGCCG | 1 cut(s) | 711 |
| Eco53kI | GAGCTC | 4 cut(s) | 235, 520, 617, 1526 |
| Eco57I | CTGAAG | 4 cut(s) | 450, 771, 783, 885 |
| Eco81I | CCTNAGG | 1 cut(s) | 1338 |
| Eco88I | CYCGRG | 1 cut(s) | 930 |
| EcoICRI | GAGCTC | 4 cut(s) | 235, 520, 617, 1526 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 663 |
| EcoO109I | RGGNCCY | 4 cut(s) | 351, 950, 1142, 1490 |
| EcoT14I | CCWWGG | 2 cut(s) | 682, 839 |
| EcoT38I | GRGCYC | 8 cut(s) | 237, 354, 403, 522, 619, 953, 1233, 1528 |
| ErhI | CCWWGG | 2 cut(s) | 682, 839 |
| Esp3I | CGTCTC | 1 cut(s) | 1165 |
| FaeI | CATG | 7 cut(s) | 48, 128, 195, 373, 832, 887, 1997 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 14, 46, 94, 126 |
| FaqI | GGGAC | 7 cut(s) | 275, 439, 683, 1178, 1323, 1356, 1481 |
| FatI | CATG | 7 cut(s) | 44, 124, 191, 369, 828, 883, 1993 |
| FauI | CCCGC | 6 cut(s) | 266, 363, 544, 940, 952, 1990 |
| FblI | GTMKAC | 1 cut(s) | 420 |
| FokI | GGATG | 2 cut(s) | 500, 1982 |
| FriOI | GRGCYC | 8 cut(s) | 237, 354, 403, 522, 619, 953, 1233, 1528 |
| FspBI | CTAG | 3 cut(s) | 840, 909, 1715 |
| GlaI | GCGC | 9 cut(s) | 378, 675, 680, 936, 1101, 1305, 1426, 1513, 1940 |
| GsaI | CCCAGC | 2 cut(s) | 891, 1511 |
| GsuI | CTGGAG | 2 cut(s) | 645, 1772 |
| HaeII | RGCGCY | 2 cut(s) | 938, 1307 |
| HapII | CCGG | 6 cut(s) | 348, 359, 485, 710, 1058, 1307 |
| HgaI | GACGC | 4 cut(s) | 581, 680, 1723, 1961 |
| HhaI | GCGC | 9 cut(s) | 379, 676, 681, 937, 1102, 1306, 1427, 1514, 1941 |
| Hin1I | GRCGYC | 3 cut(s) | 573, 1368, 1953 |
| Hin1II | CATG | 7 cut(s) | 48, 128, 195, 373, 832, 887, 1997 |
| Hin6I | GCGC | 9 cut(s) | 377, 674, 679, 935, 1100, 1304, 1425, 1512, 1939 |
| HinP1I | GCGC | 9 cut(s) | 377, 674, 679, 935, 1100, 1304, 1425, 1512, 1939 |
| HincII | GTYRAC | 2 cut(s) | 469, 1366 |
| HindII | GTYRAC | 2 cut(s) | 469, 1366 |
| HpaII | CCGG | 6 cut(s) | 348, 359, 485, 710, 1058, 1307 |
| HphI | GGTGA | 2 cut(s) | 699, 1139 |
| Hpy166II | GTNNAC | 5 cut(s) | 341, 421, 469, 1156, 1366 |
| Hpy8I | GTNNAC | 5 cut(s) | 341, 421, 469, 1156, 1366 |
| Hpy99I | CGWCG | 3 cut(s) | 791, 1373, 1955 |
| HpyCH4III | ACNGT | 2 cut(s) | 161, 187 |
| HpyCH4IV | ACGT | 5 cut(s) | 1158, 1191, 1368, 1380, 1558 |
| HpySE526I | ACGT | 5 cut(s) | 1158, 1191, 1368, 1380, 1558 |
| Hsp92I | GRCGYC | 3 cut(s) | 573, 1368, 1953 |
| Hsp92II | CATG | 7 cut(s) | 48, 128, 195, 373, 832, 887, 1997 |
| HspAI | GCGC | 9 cut(s) | 377, 674, 679, 935, 1100, 1304, 1425, 1512, 1939 |
| KpnI | GGTACC | 1 cut(s) | 287 |
| KroI | GCCGGC | 1 cut(s) | 358 |
| KroNI | GCCGGC | 1 cut(s) | 360 |
| KspI | CCGCGG | 1 cut(s) | 948 |
| LguI | GCTCTTC | 1 cut(s) | 904 |
| LmnI | GCTCC | 6 cut(s) | 43, 123, 597, 622, 1444, 1843 |
| Lsp1109I | GCAGC | 9 cut(s) | 742, 770, 1313, 1331, 1339, 1342, 1489, 1526, 1933 |
| LweI | GCATC | 4 cut(s) | 292, 648, 1115, 1276 |
| MaeI | CTAG | 3 cut(s) | 840, 909, 1715 |
| MaeII | ACGT | 5 cut(s) | 1158, 1191, 1368, 1380, 1558 |
| MaeIII | GTNAC | 2 cut(s) | 1187, 1828 |
| MbiI | CCGCTC | 1 cut(s) | 592 |
| MfeI | CAATTG | 3 cut(s) | 278, 1817, 1838 |
| MflI | RGATCY | 3 cut(s) | 1075, 1741, 1749 |
| MlyI | GAGTC | 5 cut(s) | 472, 1476, 1703, 1765, 1900 |
| MmeI | TCCRAC | 3 cut(s) | 65, 145, 180 |
| MroNI | GCCGGC | 1 cut(s) | 358 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1923 |
| MseI | TTAA | 2 cut(s) | 9, 89 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1674 |
| MspA1I | CMGCKG | 4 cut(s) | 539, 716, 761, 947 |
| MspI | CCGG | 6 cut(s) | 348, 359, 485, 710, 1058, 1307 |
| MteI | GCGCNGCGC | 1 cut(s) | 677 |
| MunI | CAATTG | 3 cut(s) | 278, 1817, 1838 |
| NaeI | GCCGGC | 1 cut(s) | 360 |
| NciI | CCSGG | 3 cut(s) | 349, 1059, 1308 |
| NgoMIV | GCCGGC | 1 cut(s) | 358 |
| NlaIII | CATG | 7 cut(s) | 48, 128, 195, 373, 832, 887, 1997 |
| NlaIV | GGNNCC | 9 cut(s) | 285, 352, 353, 401, 951, 1077, 1275, 1440, 1491 |
| NmeAIII | GCCGAG | 1 cut(s) | 241 |
| NmuCI | GTSAC | 1 cut(s) | 1828 |
| NruI | TCGCGA | 1 cut(s) | 1707 |
| NspI | RCATGY | 2 cut(s) | 373, 887 |
| OliI | CACNNNNGTG | 1 cut(s) | 1674 |
| PaeI | GCATGC | 1 cut(s) | 373 |
| PaeR7I | CTCGAG | 1 cut(s) | 930 |
| PasI | CCCWGGG | 1 cut(s) | 1445 |
| PceI | AGGCCT | 1 cut(s) | 583 |
| PciSI | GCTCTTC | 1 cut(s) | 904 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 381, 390, 1164, 1377, 1555 |
| PdiI | GCCGGC | 1 cut(s) | 360 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1923 |
| PfeI | GAWTC | 6 cut(s) | 25, 526, 767, 1252, 1729, 1853 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1822 |
| PleI | GAGTC | 5 cut(s) | 472, 1476, 1703, 1765, 1900 |
| PpsI | GAGTC | 5 cut(s) | 472, 1476, 1703, 1765, 1900 |
| PpuMI | RGGWCCY | 1 cut(s) | 1490 |
| Psp124BI | GAGCTC | 4 cut(s) | 237, 522, 619, 1528 |
| Psp5II | RGGWCCY | 1 cut(s) | 1490 |
| PspFI | CCCAGC | 2 cut(s) | 887, 1507 |
| PspN4I | GGNNCC | 9 cut(s) | 285, 352, 353, 401, 951, 1077, 1275, 1440, 1491 |
| PspOMI | GGGCCC | 3 cut(s) | 350, 399, 949 |
| PspPPI | RGGWCCY | 1 cut(s) | 1490 |
| PstI | CTGCAG | 3 cut(s) | 760, 1201, 1479 |
| PstNI | CAGNNNCTG | 1 cut(s) | 998 |
| PsuI | RGATCY | 3 cut(s) | 1075, 1741, 1749 |
| PvuII | CAGCTG | 1 cut(s) | 761 |
| RruI | TCGCGA | 1 cut(s) | 1707 |
| RsaI | GTAC | 3 cut(s) | 285, 744, 1561 |
| RsaNI | GTAC | 3 cut(s) | 284, 743, 1560 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1674 |
| SacI | GAGCTC | 4 cut(s) | 237, 522, 619, 1528 |
| SacII | CCGCGG | 1 cut(s) | 948 |
| SapI | GCTCTTC | 1 cut(s) | 904 |
| SaqAI | TTAA | 2 cut(s) | 9, 89 |
| ScaI | AGTACT | 1 cut(s) | 744 |
| SchI | GAGTC | 5 cut(s) | 472, 1476, 1703, 1765, 1900 |
| SfaNI | GCATC | 4 cut(s) | 292, 648, 1115, 1276 |
| SfcI | CTRYAG | 4 cut(s) | 417, 756, 1197, 1475 |
| Sfr274I | CTCGAG | 1 cut(s) | 930 |
| Sfr303I | CCGCGG | 1 cut(s) | 948 |
| SgrBI | CCGCGG | 1 cut(s) | 948 |
| SinI | GGWCC | 3 cut(s) | 338, 1490, 1660 |
| SlaI | CTCGAG | 1 cut(s) | 930 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1674 |
| SmlI | CTYRAG | 4 cut(s) | 930, 1137, 1527, 1908 |
| SmoI | CTYRAG | 4 cut(s) | 930, 1137, 1527, 1908 |
| SphI | GCATGC | 1 cut(s) | 373 |
| SseBI | AGGCCT | 1 cut(s) | 583 |
| SspMI | CTAG | 3 cut(s) | 840, 909, 1715 |
| SstI | GAGCTC | 4 cut(s) | 237, 522, 619, 1528 |
| StuI | AGGCCT | 1 cut(s) | 583 |
| StyI | CCWWGG | 2 cut(s) | 682, 839 |
| TaaI | ACNGT | 2 cut(s) | 161, 187 |
| TaiI | ACGT | 5 cut(s) | 1161, 1194, 1371, 1383, 1561 |
| TaqII | GACCGA | 2 cut(s) | 326, 881 |
| TatI | WGTACW | 1 cut(s) | 742 |
| TauI | GCSGC | 9 cut(s) | 183, 215, 679, 690, 693, 716, 1151, 1520, 1554 |
| TfiI | GAWTC | 6 cut(s) | 25, 526, 767, 1252, 1729, 1853 |
| Tru1I | TTAA | 2 cut(s) | 9, 89 |
| Tru9I | TTAA | 2 cut(s) | 9, 89 |
| TscAI | CASTG | 4 cut(s) | 706, 985, 1090, 1948 |
| TseFI | GTSAC | 1 cut(s) | 1828 |
| TseI | GCWGC | 9 cut(s) | 755, 758, 1301, 1319, 1352, 1355, 1477, 1514, 1946 |
| Tsp45I | GTSAC | 1 cut(s) | 1828 |
| TspDTI | ATGAA | 6 cut(s) | 180, 507, 866, 1047, 1473, 1641 |
| TspGWI | ACGGA | 3 cut(s) | 519, 1052, 1633 |
| TspRI | CASTG | 4 cut(s) | 706, 985, 1090, 1948 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1822 |
| VpaK11BI | GGWCC | 3 cut(s) | 338, 1490, 1660 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 663 |
| XapI | RAATTY | 2 cut(s) | 332, 1577 |
| XceI | RCATGY | 2 cut(s) | 373, 887 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1816, 1963 |
| XhoI | CTCGAG | 1 cut(s) | 930 |
| XmaJI | CCTAGG | 1 cut(s) | 839 |
| XmiI | GTMKAC | 1 cut(s) | 420 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1923 |
| XspI | CTAG | 3 cut(s) | 840, 909, 1715 |
| ZraI | GACGTC | 1 cut(s) | 1369 |
| ZrmI | AGTACT | 1 cut(s) | 744 |