Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 71, 269 |
| AccBSI | CCGCTC | 1 cut(s) | 59 |
| AccII | CGCG | 2 cut(s) | 342, 349 |
| AciI | CCGC | 8 cut(s) | 57, 167, 261, 349, 471, 796, 937, 953 |
| AclWI | GGATC | 2 cut(s) | 907, 920 |
| AcoI | YGGCCR | 3 cut(s) | 54, 302, 793 |
| AcsI | RAATTY | 1 cut(s) | 879 |
| AcyI | GRCGYC | 1 cut(s) | 189 |
| AfaI | GTAC | 3 cut(s) | 319, 848, 990 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 294, 425, 554, 824 |
| AgeI | ACCGGT | 1 cut(s) | 817 |
| AjnI | CCWGG | 1 cut(s) | 247 |
| AluBI | AGCT | 1 cut(s) | 173 |
| AluI | AGCT | 1 cut(s) | 173 |
| Alw26I | GTCTC | 4 cut(s) | 246, 320, 338, 866 |
| AlwI | GGATC | 2 cut(s) | 907, 920 |
| Ama87I | CYCGRG | 1 cut(s) | 646 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| ApaI | GGGCCC | 2 cut(s) | 161, 832 |
| ApeKI | GCWGC | 3 cut(s) | 377, 446, 624 |
| ApoI | RAATTY | 1 cut(s) | 879 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| AsiGI | ACCGGT | 1 cut(s) | 817 |
| AspLEI | GCGC | 1 cut(s) | 629 |
| AspS9I | GGNCC | 9 cut(s) | 157, 158, 222, 610, 765, 781, 828, 829, 887 |
| AsuC2I | CCSGG | 3 cut(s) | 151, 182, 671 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 379 |
| AvaI | CYCGRG | 1 cut(s) | 646 |
| AvaII | GGWCC | 1 cut(s) | 765 |
| BaeGI | GKGCMC | 5 cut(s) | 74, 161, 274, 355, 832 |
| BalI | TGGCCA | 1 cut(s) | 304 |
| BamHI | GGATCC | 1 cut(s) | 912 |
| BanI | GGYRCC | 2 cut(s) | 71, 269 |
| BanII | GRGCYC | 3 cut(s) | 161, 810, 832 |
| BauI | CACGAG | 2 cut(s) | 354, 420 |
| BbsI | GAAGAC | 2 cut(s) | 200, 951 |
| BbvI | GCAGC | 3 cut(s) | 389, 433, 636 |
| BccI | CCATC | 7 cut(s) | 150, 200, 313, 420, 548, 557, 645 |
| BceAI | ACGGC | 4 cut(s) | 69, 795, 808, 971 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 61, 95 |
| BciT130I | CCWGG | 1 cut(s) | 249 |
| BclI | TGATCA | 1 cut(s) | 970 |
| BcnI | CCSGG | 3 cut(s) | 151, 182, 671 |
| BcoDI | GTCTC | 4 cut(s) | 246, 320, 338, 866 |
| BfaI | CTAG | 2 cut(s) | 98, 362 |
| BfoI | RGCGCY | 1 cut(s) | 630 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BisI | GCNGC | 5 cut(s) | 57, 378, 447, 625, 796 |
| BlsI | GCNGC | 5 cut(s) | 58, 379, 448, 626, 797 |
| Bme1390I | CCNGG | 4 cut(s) | 151, 182, 249, 671 |
| Bme18I | GGWCC | 1 cut(s) | 765 |
| BmeT110I | CYCGRG | 1 cut(s) | 646 |
| BmgT120I | GGNCC | 9 cut(s) | 157, 158, 222, 610, 765, 781, 828, 829, 887 |
| BmiI | GGNNCC | 7 cut(s) | 6, 73, 159, 271, 829, 830, 914 |
| BmrFI | CCNGG | 4 cut(s) | 151, 182, 249, 671 |
| BmsI | GCATC | 3 cut(s) | 87, 393, 871 |
| BpiI | GAAGAC | 2 cut(s) | 200, 951 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 499, 531 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu10I | CCTNAGC | 1 cut(s) | 772 |
| BpuEI | CTTGAG | 1 cut(s) | 725 |
| BpuMI | CCSGG | 3 cut(s) | 151, 182, 671 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 552 |
| BsaHI | GRCGYC | 1 cut(s) | 189 |
| BsaI | GGTCTC | 1 cut(s) | 866 |
| BsaJI | CCNNGG | 1 cut(s) | 606 |
| BsaWI | WCCGGW | 2 cut(s) | 686, 817 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 294, 425, 554, 824 |
| Bse118I | RCCGGY | 3 cut(s) | 219, 817, 964 |
| Bse1I | ACTGG | 3 cut(s) | 230, 544, 760 |
| BseBI | CCWGG | 1 cut(s) | 249 |
| BseCI | ATCGAT | 2 cut(s) | 27, 552 |
| BseDI | CCNNGG | 1 cut(s) | 606 |
| BseGI | GGATG | 4 cut(s) | 305, 525, 862, 948 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 294, 425, 554, 824 |
| BseNI | ACTGG | 3 cut(s) | 230, 544, 760 |
| BseRI | GAGGAG | 1 cut(s) | 730 |
| BseSI | GKGCMC | 5 cut(s) | 74, 161, 274, 355, 832 |
| BseX3I | CGGCCG | 2 cut(s) | 54, 793 |
| BseXI | GCAGC | 3 cut(s) | 389, 433, 636 |
| BseYI | CCCAGC | 1 cut(s) | 612 |
| BsgI | GTGCAG | 1 cut(s) | 718 |
| Bsh1236I | CGCG | 2 cut(s) | 342, 349 |
| Bsh1285I | CGRYCG | 3 cut(s) | 57, 687, 796 |
| BshNI | GGYRCC | 2 cut(s) | 71, 269 |
| BshTI | ACCGGT | 1 cut(s) | 817 |
| BshVI | ATCGAT | 2 cut(s) | 27, 552 |
| BsiEI | CGRYCG | 3 cut(s) | 57, 687, 796 |
| BsiHKCI | CYCGRG | 1 cut(s) | 646 |
| BsiSI | CCGG | 7 cut(s) | 150, 182, 220, 670, 687, 818, 965 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 294, 425, 554, 824 |
| BsmAI | GTCTC | 4 cut(s) | 246, 320, 338, 866 |
| BsmBI | CGTCTC | 1 cut(s) | 338 |
| BsmI | GAATGC | 2 cut(s) | 90, 379 |
| Bso31I | GGTCTC | 1 cut(s) | 866 |
| BsoBI | CYCGRG | 1 cut(s) | 646 |
| Bsp120I | GGGCCC | 2 cut(s) | 157, 828 |
| Bsp1286I | GDGCHC | 6 cut(s) | 74, 161, 274, 355, 810, 832 |
| Bsp143I | GATC | 4 cut(s) | 28, 358, 912, 970 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspACI | CCGC | 8 cut(s) | 57, 167, 261, 349, 471, 796, 937, 953 |
| BspDI | ATCGAT | 2 cut(s) | 27, 552 |
| BspFNI | CGCG | 2 cut(s) | 342, 349 |
| BspLI | GGNNCC | 7 cut(s) | 6, 73, 159, 271, 829, 830, 914 |
| BspPI | GGATC | 2 cut(s) | 907, 920 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 269 |
| BspTNI | GGTCTC | 1 cut(s) | 866 |
| BsrBI | CCGCTC | 1 cut(s) | 59 |
| BsrFI | RCCGGY | 3 cut(s) | 219, 817, 964 |
| BsrI | ACTGG | 3 cut(s) | 230, 544, 760 |
| BssAI | RCCGGY | 3 cut(s) | 219, 817, 964 |
| BssECI | CCNNGG | 1 cut(s) | 606 |
| BssMI | GATC | 4 cut(s) | 28, 358, 912, 970 |
| BssNI | GRCGYC | 1 cut(s) | 189 |
| BssSI | CACGAG | 2 cut(s) | 354, 420 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2BI | CACGAG | 2 cut(s) | 354, 420 |
| Bst2UI | CCWGG | 1 cut(s) | 249 |
| Bst4CI | ACNGT | 2 cut(s) | 206, 993 |
| BstACI | GRCGYC | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 7 cut(s) | 171, 221, 351, 382, 437, 545, 842 |
| BstDEI | CTNAG | 2 cut(s) | 12, 772 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstF5I | GGATG | 4 cut(s) | 305, 525, 862, 948 |
| BstFNI | CGCG | 2 cut(s) | 342, 349 |
| BstH2I | RGCGCY | 1 cut(s) | 630 |
| BstHHI | GCGC | 1 cut(s) | 629 |
| BstKTI | GATC | 4 cut(s) | 31, 361, 915, 973 |
| BstMAI | GTCTC | 4 cut(s) | 246, 320, 338, 866 |
| BstMBI | GATC | 4 cut(s) | 28, 358, 912, 970 |
| BstMCI | CGRYCG | 3 cut(s) | 57, 687, 796 |
| BstNI | CCWGG | 1 cut(s) | 249 |
| BstNSI | RCATGY | 1 cut(s) | 844 |
| BstSCI | CCNGG | 4 cut(s) | 149, 180, 247, 669 |
| BstSLI | GKGCMC | 5 cut(s) | 74, 161, 274, 355, 832 |
| BstUI | CGCG | 2 cut(s) | 342, 349 |
| BstV1I | GCAGC | 3 cut(s) | 389, 433, 636 |
| BstV2I | GAAGAC | 2 cut(s) | 200, 951 |
| BstX2I | RGATCY | 2 cut(s) | 358, 912 |
| BstYI | RGATCY | 2 cut(s) | 358, 912 |
| BstZI | CGGCCG | 2 cut(s) | 54, 793 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 552 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 552 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtsCI | GGATG | 4 cut(s) | 305, 525, 862, 948 |
| BtsIMutI | CAGTG | 1 cut(s) | 753 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| Cac8I | GCNNGC | 7 cut(s) | 171, 221, 351, 382, 437, 545, 842 |
| CfoI | GCGC | 1 cut(s) | 629 |
| Cfr10I | RCCGGY | 3 cut(s) | 219, 817, 964 |
| Cfr13I | GGNCC | 9 cut(s) | 157, 158, 222, 610, 765, 781, 828, 829, 887 |
| ClaI | ATCGAT | 2 cut(s) | 27, 552 |
| CseI | GACGC | 3 cut(s) | 197, 355, 499 |
| Csp6I | GTAC | 3 cut(s) | 318, 847, 989 |
| CspAI | ACCGGT | 1 cut(s) | 817 |
| CviAII | CATG | 4 cut(s) | 572, 607, 841, 859 |
| CviQI | GTAC | 3 cut(s) | 318, 847, 989 |
| DdeI | CTNAG | 2 cut(s) | 12, 772 |
| DpnI | GATC | 4 cut(s) | 30, 360, 914, 972 |
| DpnII | GATC | 4 cut(s) | 28, 358, 912, 970 |
| EaeI | YGGCCR | 3 cut(s) | 54, 302, 793 |
| EagI | CGGCCG | 2 cut(s) | 54, 793 |
| EciI | GGCGGA | 1 cut(s) | 926 |
| EclXI | CGGCCG | 2 cut(s) | 54, 793 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 3 cut(s) | 161, 810, 832 |
| Eco31I | GGTCTC | 1 cut(s) | 866 |
| Eco47I | GGWCC | 1 cut(s) | 765 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| Eco52I | CGGCCG | 2 cut(s) | 54, 793 |
| Eco88I | CYCGRG | 1 cut(s) | 646 |
| EcoO109I | RGGNCCY | 2 cut(s) | 828, 829 |
| EcoRII | CCWGG | 1 cut(s) | 247 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT22I | ATGCAT | 1 cut(s) | 864 |
| EcoT38I | GRGCYC | 3 cut(s) | 161, 810, 832 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| Esp3I | CGTCTC | 1 cut(s) | 338 |
| FaeI | CATG | 4 cut(s) | 575, 610, 844, 862 |
| FatI | CATG | 4 cut(s) | 571, 606, 840, 858 |
| FauI | CCCGC | 2 cut(s) | 342, 960 |
| FbaI | TGATCA | 1 cut(s) | 970 |
| Fnu4HI | GCNGC | 5 cut(s) | 57, 378, 447, 625, 796 |
| FokI | GGATG | 4 cut(s) | 292, 512, 849, 935 |
| FriOI | GRGCYC | 3 cut(s) | 161, 810, 832 |
| Fsp4HI | GCNGC | 5 cut(s) | 57, 378, 447, 625, 796 |
| FspBI | CTAG | 2 cut(s) | 98, 362 |
| GlaI | GCGC | 1 cut(s) | 628 |
| GluI | GCNGC | 5 cut(s) | 57, 378, 447, 625, 796 |
| GsaI | CCCAGC | 1 cut(s) | 616 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 1 cut(s) | 630 |
| HapII | CCGG | 7 cut(s) | 150, 182, 220, 670, 687, 818, 965 |
| HgaI | GACGC | 3 cut(s) | 197, 355, 499 |
| HhaI | GCGC | 1 cut(s) | 629 |
| Hin1I | GRCGYC | 1 cut(s) | 189 |
| Hin1II | CATG | 4 cut(s) | 575, 610, 844, 862 |
| Hin6I | GCGC | 1 cut(s) | 627 |
| HinP1I | GCGC | 1 cut(s) | 627 |
| HincII | GTYRAC | 1 cut(s) | 592 |
| HindII | GTYRAC | 1 cut(s) | 592 |
| HinfI | GANTC | 3 cut(s) | 244, 584, 693 |
| HpaII | CCGG | 7 cut(s) | 150, 182, 220, 670, 687, 818, 965 |
| HphI | GGTGA | 2 cut(s) | 104, 379 |
| Hpy166II | GTNNAC | 2 cut(s) | 320, 592 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 239, 812 |
| Hpy188III | TCNNGA | 7 cut(s) | 32, 98, 341, 463, 895, 910, 916 |
| Hpy8I | GTNNAC | 2 cut(s) | 320, 592 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 3 cut(s) | 137, 234, 460 |
| HpyCH4III | ACNGT | 2 cut(s) | 206, 993 |
| HpyCH4V | TGCA | 4 cut(s) | 377, 571, 735, 862 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 772 |
| Hsp92I | GRCGYC | 1 cut(s) | 189 |
| Hsp92II | CATG | 4 cut(s) | 575, 610, 844, 862 |
| HspAI | GCGC | 1 cut(s) | 627 |
| KroI | GCCGGC | 1 cut(s) | 219 |
| KroNI | GCCGGC | 1 cut(s) | 221 |
| Ksp22I | TGATCA | 1 cut(s) | 970 |
| Kzo9I | GATC | 4 cut(s) | 28, 358, 912, 970 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 3 cut(s) | 389, 433, 636 |
| LweI | GCATC | 3 cut(s) | 87, 393, 871 |
| MaeI | CTAG | 2 cut(s) | 98, 362 |
| MaeIII | GTNAC | 1 cut(s) | 511 |
| MalI | GATC | 4 cut(s) | 30, 360, 914, 972 |
| MbiI | CCGCTC | 1 cut(s) | 59 |
| MboI | GATC | 4 cut(s) | 28, 358, 912, 970 |
| MboII | GAAGA | 6 cut(s) | 47, 50, 200, 407, 925, 956 |
| MflI | RGATCY | 2 cut(s) | 358, 912 |
| MhlI | GDGCHC | 6 cut(s) | 74, 161, 274, 355, 810, 832 |
| MlsI | TGGCCA | 1 cut(s) | 304 |
| MluCI | AATT | 5 cut(s) | 41, 298, 578, 879, 929 |
| MluNI | TGGCCA | 1 cut(s) | 304 |
| MlyI | GAGTC | 2 cut(s) | 238, 578 |
| MmeI | TCCRAC | 2 cut(s) | 162, 501 |
| Mox20I | TGGCCA | 1 cut(s) | 304 |
| Mph1103I | ATGCAT | 1 cut(s) | 864 |
| MroNI | GCCGGC | 1 cut(s) | 219 |
| MscI | TGGCCA | 1 cut(s) | 304 |
| MseI | TTAA | 1 cut(s) | 44 |
| Msp20I | TGGCCA | 1 cut(s) | 304 |
| MspI | CCGG | 7 cut(s) | 150, 182, 220, 670, 687, 818, 965 |
| MspR9I | CCNGG | 4 cut(s) | 151, 182, 249, 671 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 379 |
| MvaI | CCWGG | 1 cut(s) | 249 |
| MvnI | CGCG | 2 cut(s) | 342, 349 |
| NaeI | GCCGGC | 1 cut(s) | 221 |
| NciI | CCSGG | 3 cut(s) | 151, 182, 671 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 4 cut(s) | 28, 358, 912, 970 |
| NgoMIV | GCCGGC | 1 cut(s) | 219 |
| NlaIII | CATG | 4 cut(s) | 575, 610, 844, 862 |
| NlaIV | GGNNCC | 7 cut(s) | 6, 73, 159, 271, 829, 830, 914 |
| NmuCI | GTSAC | 1 cut(s) | 511 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| NsiI | ATGCAT | 1 cut(s) | 864 |
| NspI | RCATGY | 1 cut(s) | 844 |
| PaeI | GCATGC | 1 cut(s) | 844 |
| PctI | GAATGC | 2 cut(s) | 90, 379 |
| PdiI | GCCGGC | 1 cut(s) | 221 |
| PfeI | GAWTC | 1 cut(s) | 693 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PfoI | TCCNGGA | 2 cut(s) | 180, 247 |
| PinAI | ACCGGT | 1 cut(s) | 817 |
| PkrI | GCNGC | 5 cut(s) | 58, 379, 448, 626, 797 |
| PleI | GAGTC | 2 cut(s) | 238, 578 |
| PpsI | GAGTC | 2 cut(s) | 238, 578 |
| Psp6I | CCWGG | 1 cut(s) | 247 |
| PspFI | CCCAGC | 1 cut(s) | 612 |
| PspGI | CCWGG | 1 cut(s) | 247 |
| PspN4I | GGNNCC | 7 cut(s) | 6, 73, 159, 271, 829, 830, 914 |
| PspOMI | GGGCCC | 2 cut(s) | 157, 828 |
| PspPI | GGNCC | 9 cut(s) | 157, 158, 222, 610, 765, 781, 828, 829, 887 |
| PsuI | RGATCY | 2 cut(s) | 358, 912 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 3 cut(s) | 319, 848, 990 |
| RsaNI | GTAC | 3 cut(s) | 318, 847, 989 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 5 cut(s) | 57, 378, 447, 625, 796 |
| Sau3AI | GATC | 4 cut(s) | 28, 358, 912, 970 |
| Sau96I | GGNCC | 9 cut(s) | 157, 158, 222, 610, 765, 781, 828, 829, 887 |
| SchI | GAGTC | 2 cut(s) | 238, 578 |
| ScrFI | CCNGG | 4 cut(s) | 151, 182, 249, 671 |
| SduI | GDGCHC | 6 cut(s) | 74, 161, 274, 355, 810, 832 |
| SetI | ASST | 6 cut(s) | 175, 367, 565, 622, 740, 770 |
| SfaNI | GCATC | 3 cut(s) | 87, 393, 871 |
| SinI | GGWCC | 1 cut(s) | 765 |
| SmlI | CTYRAG | 1 cut(s) | 704 |
| SmoI | CTYRAG | 1 cut(s) | 704 |
| SphI | GCATGC | 1 cut(s) | 844 |
| Sse9I | AATT | 5 cut(s) | 41, 298, 578, 879, 929 |
| SsiI | CCGC | 8 cut(s) | 57, 167, 261, 349, 471, 796, 937, 953 |
| SspMI | CTAG | 2 cut(s) | 98, 362 |
| StyD4I | CCNGG | 4 cut(s) | 149, 180, 247, 669 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 2 cut(s) | 206, 993 |
| TaqI | TCGA | 4 cut(s) | 27, 61, 552, 942 |
| TasI | AATT | 5 cut(s) | 41, 298, 578, 879, 929 |
| TatI | WGTACW | 1 cut(s) | 317 |
| TauI | GCSGC | 2 cut(s) | 59, 798 |
| TfiI | GAWTC | 1 cut(s) | 693 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 1 cut(s) | 760 |
| TseFI | GTSAC | 1 cut(s) | 511 |
| TseI | GCWGC | 3 cut(s) | 377, 446, 624 |
| Tsp45I | GTSAC | 1 cut(s) | 511 |
| TspDTI | ATGAA | 2 cut(s) | 630, 715 |
| TspRI | CASTG | 1 cut(s) | 760 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| VpaK11BI | GGWCC | 1 cut(s) | 765 |
| XapI | RAATTY | 1 cut(s) | 879 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XceI | RCATGY | 1 cut(s) | 844 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |
| XspI | CTAG | 2 cut(s) | 98, 362 |
| Zsp2I | ATGCAT | 1 cut(s) | 864 |