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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1745 |
| AccB1I | GGYRCC | 1 cut(s) | 728 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 440, 887 |
| AccBSI | CCGCTC | 1 cut(s) | 59 |
| AccI | GTMKAC | 1 cut(s) | 1252 |
| AclWI | GGATC | 3 cut(s) | 679, 692, 1392 |
| AcoI | YGGCCR | 3 cut(s) | 468, 1419, 1590 |
| AcuI | CTGAAG | 4 cut(s) | 342, 534, 1092, 1368 |
| AcyI | GRCGYC | 1 cut(s) | 729 |
| AfaI | GTAC | 8 cut(s) | 231, 822, 846, 867, 1068, 1206, 1323, 1507 |
| AflIII | ACRYGT | 1 cut(s) | 706 |
| AgsI | TTSAA | 4 cut(s) | 269, 1211, 1334, 1559 |
| AjnI | CCWGG | 6 cut(s) | 173, 387, 724, 1222, 1592, 1665 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1722, 1754 |
| AluBI | AGCT | 7 cut(s) | 103, 374, 675, 1099, 1199, 1700, 1716 |
| AluI | AGCT | 7 cut(s) | 103, 374, 675, 1099, 1199, 1700, 1716 |
| Alw21I | GWGCWC | 1 cut(s) | 376 |
| Alw26I | GTCTC | 3 cut(s) | 1208, 1265, 1656 |
| AlwI | GGATC | 3 cut(s) | 679, 692, 1392 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 842 |
| Ama87I | CYCGRG | 3 cut(s) | 13, 929, 1133 |
| ApeKI | GCWGC | 6 cut(s) | 88, 1148, 1151, 1375, 1378, 1700 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 236, 268 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1734 |
| AspS9I | GGNCC | 9 cut(s) | 206, 385, 589, 661, 1268, 1548, 1570, 1663, 1681 |
| AsuC2I | CCSGG | 3 cut(s) | 14, 15, 383 |
| AsuHPI | GGTGA | 1 cut(s) | 732 |
| AsuNHI | GCTAGC | 1 cut(s) | 1195 |
| AvaI | CYCGRG | 3 cut(s) | 13, 929, 1133 |
| AvaII | GGWCC | 4 cut(s) | 385, 661, 1268, 1548 |
| AxyI | CCTNAGG | 1 cut(s) | 744 |
| BaeGI | GKGCMC | 1 cut(s) | 414 |
| BalI | TGGCCA | 1 cut(s) | 1592 |
| BamHI | GGATCC | 1 cut(s) | 684 |
| BanI | GGYRCC | 1 cut(s) | 728 |
| BanII | GRGCYC | 3 cut(s) | 21, 114, 376 |
| BauI | CACGAG | 1 cut(s) | 1295 |
| Bbv12I | GWGCWC | 1 cut(s) | 376 |
| BbvI | GCAGC | 6 cut(s) | 75, 1135, 1138, 1362, 1365, 1687 |
| BccI | CCATC | 2 cut(s) | 269, 1548 |
| BceAI | ACGGC | 1 cut(s) | 968 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 989, 1023 |
| BciT130I | CCWGG | 6 cut(s) | 175, 389, 726, 1224, 1594, 1667 |
| BclI | TGATCA | 1 cut(s) | 622 |
| BcnI | CCSGG | 3 cut(s) | 14, 15, 383 |
| BcoDI | GTCTC | 3 cut(s) | 1208, 1265, 1656 |
| BfaI | CTAG | 5 cut(s) | 216, 944, 1196, 1242, 1431 |
| BfmI | CTRYAG | 2 cut(s) | 27, 1379 |
| BfoI | RGCGCY | 2 cut(s) | 732, 1649 |
| BfuAI | ACCTGC | 1 cut(s) | 1745 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 135, 1427 |
| BglII | AGATCT | 1 cut(s) | 1561 |
| Bme1390I | CCNGG | 9 cut(s) | 14, 15, 175, 383, 389, 726, 1224, 1594, 1667 |
| Bme18I | GGWCC | 4 cut(s) | 385, 661, 1268, 1548 |
| BmeT110I | CYCGRG | 3 cut(s) | 13, 929, 1133 |
| BmgT120I | GGNCC | 9 cut(s) | 206, 385, 589, 661, 1268, 1548, 1570, 1663, 1681 |
| BmrFI | CCNGG | 9 cut(s) | 14, 15, 175, 383, 389, 726, 1224, 1594, 1667 |
| BmsI | GCATC | 5 cut(s) | 160, 280, 1045, 1228, 1699 |
| BmtI | GCTAGC | 1 cut(s) | 1199 |
| BpmI | CTGGAG | 3 cut(s) | 650, 1245, 1640 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1095, 1630 |
| BpuEI | CTTGAG | 3 cut(s) | 402, 1586, 1680 |
| BpuMI | CCSGG | 3 cut(s) | 14, 15, 383 |
| Bsa29I | ATCGAT | 2 cut(s) | 1362, 1368 |
| BsaBI | GATNNNNATC | 2 cut(s) | 920, 1368 |
| BsaHI | GRCGYC | 1 cut(s) | 729 |
| BsaJI | CCNNGG | 4 cut(s) | 13, 14, 724, 1665 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 205, 235, 1071, 1101, 1722, 1752 |
| Bse118I | RCCGGY | 1 cut(s) | 352 |
| Bse1I | ACTGG | 6 cut(s) | 227, 478, 836, 1191, 1623, 1665 |
| Bse21I | CCTNAGG | 1 cut(s) | 744 |
| Bse8I | GATNNNNATC | 2 cut(s) | 920, 1368 |
| BseBI | CCWGG | 6 cut(s) | 175, 389, 726, 1224, 1594, 1667 |
| BseCI | ATCGAT | 2 cut(s) | 1362, 1368 |
| BseDI | CCNNGG | 4 cut(s) | 13, 14, 724, 1665 |
| BseGI | GGATG | 2 cut(s) | 141, 247 |
| BseJI | GATNNNNATC | 2 cut(s) | 920, 1368 |
| BseMII | CTCAG | 6 cut(s) | 266, 291, 735, 1086, 1307, 1558 |
| BseNI | ACTGG | 6 cut(s) | 227, 478, 836, 1191, 1623, 1665 |
| BsePI | GCGCGC | 3 cut(s) | 38, 40, 1290 |
| BseRI | GAGGAG | 1 cut(s) | 1209 |
| BseSI | GKGCMC | 1 cut(s) | 414 |
| BseX3I | CGGCCG | 1 cut(s) | 1419 |
| BseXI | GCAGC | 6 cut(s) | 75, 1135, 1138, 1362, 1365, 1687 |
| BseYI | CCCAGC | 1 cut(s) | 675 |
| BsgI | GTGCAG | 1 cut(s) | 1155 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1422, 1501 |
| BshNI | GGYRCC | 1 cut(s) | 728 |
| BshVI | ATCGAT | 2 cut(s) | 1362, 1368 |
| BsiEI | CGRYCG | 2 cut(s) | 1422, 1501 |
| BsiHKAI | GWGCWC | 1 cut(s) | 376 |
| BsiHKCI | CYCGRG | 3 cut(s) | 13, 929, 1133 |
| BsiSI | CCGG | 4 cut(s) | 14, 353, 383, 467 |
| BslFI | GGGAC | 3 cut(s) | 1034, 1281, 1534 |
| BsmAI | GTCTC | 3 cut(s) | 1208, 1265, 1656 |
| BsmBI | CGTCTC | 1 cut(s) | 1265 |
| BsmFI | GGGAC | 3 cut(s) | 1034, 1281, 1534 |
| BsoBI | CYCGRG | 3 cut(s) | 13, 929, 1133 |
| Bsp1286I | GDGCHC | 4 cut(s) | 21, 114, 376, 414 |
| Bsp143I | GATC | 8 cut(s) | 33, 622, 684, 898, 1369, 1384, 1498, 1561 |
| Bsp68I | TCGCGA | 1 cut(s) | 257 |
| BspCNI | CTCAG | 6 cut(s) | 267, 292, 736, 1087, 1308, 1557 |
| BspDI | ATCGAT | 2 cut(s) | 1362, 1368 |
| BspMAI | CTGCAG | 1 cut(s) | 1383 |
| BspMI | ACCTGC | 1 cut(s) | 1745 |
| BspOI | GCTAGC | 1 cut(s) | 1199 |
| BspPI | GGATC | 3 cut(s) | 679, 692, 1392 |
| BspT107I | GGYRCC | 1 cut(s) | 728 |
| BsrBI | CCGCTC | 1 cut(s) | 59 |
| BsrFI | RCCGGY | 1 cut(s) | 352 |
| BsrI | ACTGG | 6 cut(s) | 227, 478, 836, 1191, 1623, 1665 |
| BssAI | RCCGGY | 1 cut(s) | 352 |
| BssECI | CCNNGG | 4 cut(s) | 13, 14, 724, 1665 |
| BssHII | GCGCGC | 3 cut(s) | 38, 40, 1290 |
| BssMI | GATC | 8 cut(s) | 33, 622, 684, 898, 1369, 1384, 1498, 1561 |
| BssNI | GRCGYC | 1 cut(s) | 729 |
| BssSI | CACGAG | 1 cut(s) | 1295 |
| Bst2BI | CACGAG | 1 cut(s) | 1295 |
| Bst2UI | CCWGG | 6 cut(s) | 175, 389, 726, 1224, 1594, 1667 |
| Bst4CI | ACNGT | 3 cut(s) | 31, 1414, 1528 |
| Bst6I | CTCTTC | 3 cut(s) | 257, 1104, 1206 |
| BstACI | GRCGYC | 1 cut(s) | 729 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1074 |
| BstF5I | GGATG | 2 cut(s) | 141, 247 |
| BstH2I | RGCGCY | 2 cut(s) | 732, 1649 |
| BstKTI | GATC | 8 cut(s) | 36, 625, 687, 901, 1372, 1387, 1501, 1564 |
| BstMAI | GTCTC | 3 cut(s) | 1208, 1265, 1656 |
| BstMBI | GATC | 8 cut(s) | 33, 622, 684, 898, 1369, 1384, 1498, 1561 |
| BstMCI | CGRYCG | 2 cut(s) | 1422, 1501 |
| BstNI | CCWGG | 6 cut(s) | 175, 389, 726, 1224, 1594, 1667 |
| BstNSI | RCATGY | 1 cut(s) | 723 |
| BstSCI | CCNGG | 9 cut(s) | 12, 13, 173, 381, 387, 724, 1222, 1592, 1665 |
| BstSFI | CTRYAG | 2 cut(s) | 27, 1379 |
| BstSLI | GKGCMC | 1 cut(s) | 414 |
| BstV1I | GCAGC | 6 cut(s) | 75, 1135, 1138, 1362, 1365, 1687 |
| BstX2I | RGATCY | 3 cut(s) | 684, 1384, 1561 |
| BstYI | RGATCY | 3 cut(s) | 684, 1384, 1561 |
| BstZI | CGGCCG | 1 cut(s) | 1419 |
| Bsu15I | ATCGAT | 2 cut(s) | 1362, 1368 |
| Bsu36I | CCTNAGG | 1 cut(s) | 744 |
| BsuTUI | ATCGAT | 2 cut(s) | 1362, 1368 |
| BtsCI | GGATG | 2 cut(s) | 141, 247 |
| BtsI | GCAGTG | 1 cut(s) | 733 |
| BtsIMutI | CAGTG | 5 cut(s) | 36, 471, 548, 632, 733 |
| BtuMI | TCGCGA | 1 cut(s) | 257 |
| BveI | ACCTGC | 1 cut(s) | 1745 |
| CaiI | CAGNNNCTG | 1 cut(s) | 842 |
| CciNI | GCGGCCGC | 1 cut(s) | 1419 |
| Cfr10I | RCCGGY | 1 cut(s) | 352 |
| Cfr13I | GGNCC | 9 cut(s) | 206, 385, 589, 661, 1268, 1548, 1570, 1663, 1681 |
| Cfr9I | CCCGGG | 1 cut(s) | 13 |
| ClaI | ATCGAT | 2 cut(s) | 1362, 1368 |
| CseI | GACGC | 3 cut(s) | 697, 714, 1037 |
| Csp6I | GTAC | 8 cut(s) | 230, 821, 845, 866, 1067, 1205, 1322, 1506 |
| CviAII | CATG | 3 cut(s) | 238, 720, 1604 |
| CviQI | GTAC | 8 cut(s) | 230, 821, 845, 866, 1067, 1205, 1322, 1506 |
| DinI | GGCGCC | 1 cut(s) | 730 |
| DpnI | GATC | 8 cut(s) | 35, 624, 686, 900, 1371, 1386, 1500, 1563 |
| DpnII | GATC | 8 cut(s) | 33, 622, 684, 898, 1369, 1384, 1498, 1561 |
| EaeI | YGGCCR | 3 cut(s) | 468, 1419, 1590 |
| EagI | CGGCCG | 1 cut(s) | 1419 |
| Eam1104I | CTCTTC | 3 cut(s) | 257, 1104, 1206 |
| EarI | CTCTTC | 3 cut(s) | 257, 1104, 1206 |
| EciI | GGCGGA | 1 cut(s) | 1730 |
| Ecl136II | GAGCTC | 1 cut(s) | 374 |
| EclXI | CGGCCG | 1 cut(s) | 1419 |
| Eco147I | AGGCCT | 1 cut(s) | 220 |
| Eco24I | GRGCYC | 3 cut(s) | 21, 114, 376 |
| Eco32I | GATATC | 2 cut(s) | 281, 1366 |
| Eco47I | GGWCC | 4 cut(s) | 385, 661, 1268, 1548 |
| Eco52I | CGGCCG | 1 cut(s) | 1419 |
| Eco53kI | GAGCTC | 1 cut(s) | 374 |
| Eco57I | CTGAAG | 4 cut(s) | 342, 534, 1092, 1368 |
| Eco81I | CCTNAGG | 1 cut(s) | 744 |
| Eco88I | CYCGRG | 3 cut(s) | 13, 929, 1133 |
| EcoICRI | GAGCTC | 1 cut(s) | 374 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1074 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1268, 1548 |
| EcoRII | CCWGG | 6 cut(s) | 173, 387, 724, 1222, 1592, 1665 |
| EcoRV | GATATC | 2 cut(s) | 281, 1366 |
| EcoT22I | ATGCAT | 1 cut(s) | 573 |
| EcoT38I | GRGCYC | 3 cut(s) | 21, 114, 376 |
| EgeI | GGCGCC | 1 cut(s) | 730 |
| EheI | GGCGCC | 1 cut(s) | 730 |
| Esp3I | CGTCTC | 1 cut(s) | 1265 |
| FaeI | CATG | 3 cut(s) | 241, 723, 1607 |
| FaqI | GGGAC | 3 cut(s) | 1034, 1281, 1534 |
| FatI | CATG | 3 cut(s) | 237, 719, 1603 |
| FauI | CCCGC | 1 cut(s) | 373 |
| FbaI | TGATCA | 1 cut(s) | 622 |
| FblI | GTMKAC | 1 cut(s) | 1252 |
| FokI | GGATG | 2 cut(s) | 128, 254 |
| FriOI | GRGCYC | 3 cut(s) | 21, 114, 376 |
| FspBI | CTAG | 5 cut(s) | 216, 944, 1196, 1242, 1431 |
| GsaI | CCCAGC | 1 cut(s) | 679 |
| GsuI | CTGGAG | 3 cut(s) | 650, 1245, 1640 |
| HaeII | RGCGCY | 2 cut(s) | 732, 1649 |
| HapII | CCGG | 4 cut(s) | 14, 353, 383, 467 |
| HgaI | GACGC | 3 cut(s) | 697, 714, 1037 |
| Hin1I | GRCGYC | 1 cut(s) | 729 |
| Hin1II | CATG | 3 cut(s) | 241, 723, 1607 |
| HinfI | GANTC | 6 cut(s) | 524, 832, 877, 1090, 1216, 1555 |
| HpaII | CCGG | 4 cut(s) | 14, 353, 383, 467 |
| HphI | GGTGA | 1 cut(s) | 732 |
| Hpy166II | GTNNAC | 1 cut(s) | 1253 |
| Hpy188I | TCNGA | 4 cut(s) | 75, 772, 1317, 1708 |
| Hpy8I | GTNNAC | 1 cut(s) | 1253 |
| HpyAV | CCTTC | 7 cut(s) | 19, 447, 675, 935, 1188, 1241, 1328 |
| HpyCH4III | ACNGT | 3 cut(s) | 31, 1414, 1528 |
| HpyCH4V | TGCA | 5 cut(s) | 571, 797, 1172, 1381, 1754 |
| Hsp92I | GRCGYC | 1 cut(s) | 729 |
| Hsp92II | CATG | 3 cut(s) | 241, 723, 1607 |
| KasI | GGCGCC | 1 cut(s) | 728 |
| KflI | GGGWCCC | 1 cut(s) | 1268 |
| Ksp22I | TGATCA | 1 cut(s) | 622 |
| Kzo9I | GATC | 8 cut(s) | 33, 622, 684, 898, 1369, 1384, 1498, 1561 |
| LmnI | GCTCC | 7 cut(s) | 24, 361, 379, 1126, 1144, 1337, 1621 |
| Lsp1109I | GCAGC | 6 cut(s) | 75, 1135, 1138, 1362, 1365, 1687 |
| LweI | GCATC | 5 cut(s) | 160, 280, 1045, 1228, 1699 |
| MaeI | CTAG | 5 cut(s) | 216, 944, 1196, 1242, 1431 |
| MaeIII | GTNAC | 5 cut(s) | 95, 446, 481, 502, 1528 |
| MalI | GATC | 8 cut(s) | 35, 624, 686, 900, 1371, 1386, 1500, 1563 |
| MauBI | CGCGCGCG | 1 cut(s) | 38 |
| MbiI | CCGCTC | 1 cut(s) | 59 |
| MboI | GATC | 8 cut(s) | 33, 622, 684, 898, 1369, 1384, 1498, 1561 |
| MboII | GAAGA | 8 cut(s) | 244, 281, 335, 533, 647, 1121, 1223, 1546 |
| MflI | RGATCY | 3 cut(s) | 684, 1384, 1561 |
| MhlI | GDGCHC | 4 cut(s) | 21, 114, 376, 414 |
| MlsI | TGGCCA | 1 cut(s) | 1592 |
| MluCI | AATT | 7 cut(s) | 131, 146, 201, 396, 882, 1355, 1574 |
| MluI | ACGCGT | 1 cut(s) | 706 |
| MluNI | TGGCCA | 1 cut(s) | 1592 |
| Mly113I | GGCGCC | 1 cut(s) | 729 |
| MlyI | GAGTC | 1 cut(s) | 1210 |
| Mox20I | TGGCCA | 1 cut(s) | 1592 |
| Mph1103I | ATGCAT | 1 cut(s) | 573 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1734 |
| MscI | TGGCCA | 1 cut(s) | 1592 |
| MseI | TTAA | 2 cut(s) | 456, 1577 |
| MslI | CAYNNNNRTG | 2 cut(s) | 407, 566 |
| Msp20I | TGGCCA | 1 cut(s) | 1592 |
| MspA1I | CMGCKG | 1 cut(s) | 693 |
| MspI | CCGG | 4 cut(s) | 14, 353, 383, 467 |
| MspR9I | CCNGG | 9 cut(s) | 14, 15, 175, 383, 389, 726, 1224, 1594, 1667 |
| MvaI | CCWGG | 6 cut(s) | 175, 389, 726, 1224, 1594, 1667 |
| NarI | GGCGCC | 1 cut(s) | 729 |
| NciI | CCSGG | 3 cut(s) | 14, 15, 383 |
| NdeII | GATC | 8 cut(s) | 33, 622, 684, 898, 1369, 1384, 1498, 1561 |
| NheI | GCTAGC | 1 cut(s) | 1195 |
| NlaIII | CATG | 3 cut(s) | 241, 723, 1607 |
| NmeAIII | GCCGAG | 1 cut(s) | 1266 |
| NmuCI | GTSAC | 3 cut(s) | 446, 481, 502 |
| NotI | GCGGCCGC | 1 cut(s) | 1419 |
| NruI | TCGCGA | 1 cut(s) | 257 |
| NsiI | ATGCAT | 1 cut(s) | 573 |
| NspI | RCATGY | 1 cut(s) | 723 |
| PaeR7I | CTCGAG | 2 cut(s) | 929, 1133 |
| PauI | GCGCGC | 3 cut(s) | 38, 40, 1290 |
| PceI | AGGCCT | 1 cut(s) | 220 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1293 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1734 |
| PfeI | GAWTC | 5 cut(s) | 524, 832, 877, 1090, 1555 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 440, 887 |
| PfoI | TCCNGGA | 1 cut(s) | 1222 |
| Ple19I | CGATCG | 1 cut(s) | 1501 |
| PleI | GAGTC | 1 cut(s) | 1210 |
| PluTI | GGCGCC | 1 cut(s) | 732 |
| PpsI | GAGTC | 1 cut(s) | 1210 |
| PpuMI | RGGWCCY | 2 cut(s) | 1268, 1548 |
| Psp124BI | GAGCTC | 1 cut(s) | 376 |
| Psp5II | RGGWCCY | 2 cut(s) | 1268, 1548 |
| Psp6I | CCWGG | 6 cut(s) | 173, 387, 724, 1222, 1592, 1665 |
| PspFI | CCCAGC | 1 cut(s) | 675 |
| PspGI | CCWGG | 6 cut(s) | 173, 387, 724, 1222, 1592, 1665 |
| PspPI | GGNCC | 9 cut(s) | 206, 385, 589, 661, 1268, 1548, 1570, 1663, 1681 |
| PspPPI | RGGWCCY | 2 cut(s) | 1268, 1548 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 804, 836, 849, 881 |
| PstI | CTGCAG | 1 cut(s) | 1383 |
| PstNI | CAGNNNCTG | 1 cut(s) | 842 |
| PsuI | RGATCY | 3 cut(s) | 684, 1384, 1561 |
| PteI | GCGCGC | 3 cut(s) | 38, 40, 1290 |
| PvuI | CGATCG | 1 cut(s) | 1501 |
| RruI | TCGCGA | 1 cut(s) | 257 |
| RsaI | GTAC | 8 cut(s) | 231, 822, 846, 867, 1068, 1206, 1323, 1507 |
| RsaNI | GTAC | 8 cut(s) | 230, 821, 845, 866, 1067, 1205, 1322, 1506 |
| RseI | CAYNNNNRTG | 2 cut(s) | 407, 566 |
| SacI | GAGCTC | 1 cut(s) | 376 |
| SaqAI | TTAA | 2 cut(s) | 456, 1577 |
| Sau3AI | GATC | 8 cut(s) | 33, 622, 684, 898, 1369, 1384, 1498, 1561 |
| Sau96I | GGNCC | 9 cut(s) | 206, 385, 589, 661, 1268, 1548, 1570, 1663, 1681 |
| SchI | GAGTC | 1 cut(s) | 1210 |
| ScrFI | CCNGG | 9 cut(s) | 14, 15, 175, 383, 389, 726, 1224, 1594, 1667 |
| SduI | GDGCHC | 4 cut(s) | 21, 114, 376, 414 |
| SfaNI | GCATC | 5 cut(s) | 160, 280, 1045, 1228, 1699 |
| SfcI | CTRYAG | 2 cut(s) | 27, 1379 |
| SfoI | GGCGCC | 1 cut(s) | 730 |
| Sfr274I | CTCGAG | 2 cut(s) | 929, 1133 |
| SinI | GGWCC | 4 cut(s) | 385, 661, 1268, 1548 |
| SlaI | CTCGAG | 2 cut(s) | 929, 1133 |
| SmaI | CCCGGG | 1 cut(s) | 15 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 407, 566 |
| SmlI | CTYRAG | 5 cut(s) | 417, 929, 1133, 1565, 1695 |
| SmoI | CTYRAG | 5 cut(s) | 417, 929, 1133, 1565, 1695 |
| Sse9I | AATT | 7 cut(s) | 131, 146, 201, 396, 882, 1355, 1574 |
| SseBI | AGGCCT | 1 cut(s) | 220 |
| SspDI | GGCGCC | 1 cut(s) | 728 |
| SspMI | CTAG | 5 cut(s) | 216, 944, 1196, 1242, 1431 |
| SstI | GAGCTC | 1 cut(s) | 376 |
| StuI | AGGCCT | 1 cut(s) | 220 |
| StyD4I | CCNGG | 9 cut(s) | 12, 13, 173, 381, 387, 724, 1222, 1592, 1665 |
| TaaI | ACNGT | 3 cut(s) | 31, 1414, 1528 |
| TasI | AATT | 7 cut(s) | 131, 146, 201, 396, 882, 1355, 1574 |
| TatI | WGTACW | 2 cut(s) | 229, 844 |
| TauI | GCSGC | 6 cut(s) | 59, 1168, 1421, 1424, 1637, 1682 |
| TfiI | GAWTC | 5 cut(s) | 524, 832, 877, 1090, 1555 |
| Tru1I | TTAA | 2 cut(s) | 456, 1577 |
| Tru9I | TTAA | 2 cut(s) | 456, 1577 |
| TscAI | CASTG | 5 cut(s) | 36, 478, 555, 632, 740 |
| TseFI | GTSAC | 3 cut(s) | 446, 481, 502 |
| TseI | GCWGC | 6 cut(s) | 88, 1148, 1151, 1375, 1378, 1700 |
| Tsp45I | GTSAC | 3 cut(s) | 446, 481, 502 |
| TspDTI | ATGAA | 3 cut(s) | 654, 1098, 1743 |
| TspGWI | ACGGA | 3 cut(s) | 521, 824, 869 |
| TspMI | CCCGGG | 1 cut(s) | 13 |
| TspRI | CASTG | 5 cut(s) | 36, 478, 555, 632, 740 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 440, 887 |
| VpaK11BI | GGWCC | 4 cut(s) | 385, 661, 1268, 1548 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1074 |
| XbaI | TCTAGA | 1 cut(s) | 943 |
| XceI | RCATGY | 1 cut(s) | 723 |
| XhoI | CTCGAG | 2 cut(s) | 929, 1133 |
| XmaI | CCCGGG | 1 cut(s) | 13 |
| XmiI | GTMKAC | 1 cut(s) | 1252 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1734 |
| XspI | CTAG | 5 cut(s) | 216, 944, 1196, 1242, 1431 |
| Zsp2I | ATGCAT | 1 cut(s) | 573 |