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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 389 |
| AccI | GTMKAC | 2 cut(s) | 229, 513 |
| AccII | CGCG | 7 cut(s) | 120, 145, 307, 459, 480, 482, 509 |
| AccIII | TCCGGA | 1 cut(s) | 199 |
| AciI | CCGC | 9 cut(s) | 120, 132, 143, 261, 305, 407, 413, 478, 509 |
| AcoI | YGGCCR | 3 cut(s) | 70, 274, 302 |
| AfaI | GTAC | 2 cut(s) | 223, 318 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 385, 436 |
| AgeI | ACCGGT | 2 cut(s) | 113, 182 |
| AgsI | TTSAA | 2 cut(s) | 419, 444 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 411, 443 |
| AluBI | AGCT | 1 cut(s) | 284 |
| AluI | AGCT | 1 cut(s) | 284 |
| Alw21I | GWGCWC | 1 cut(s) | 286 |
| Alw26I | GTCTC | 1 cut(s) | 247 |
| Ama87I | CYCGRG | 1 cut(s) | 434 |
| Aor13HI | TCCGGA | 1 cut(s) | 199 |
| AoxI | GGCC | 4 cut(s) | 37, 70, 274, 302 |
| AsiGI | ACCGGT | 2 cut(s) | 113, 182 |
| AsiSI | GCGATCGC | 1 cut(s) | 457 |
| AspA2I | CCTAGG | 1 cut(s) | 287 |
| AspLEI | GCGC | 2 cut(s) | 461, 482 |
| AspS9I | GGNCC | 1 cut(s) | 111 |
| AsuC2I | CCSGG | 5 cut(s) | 273, 380, 435, 436, 467 |
| AsuHPI | GGTGA | 2 cut(s) | 25, 261 |
| AvaI | CYCGRG | 1 cut(s) | 434 |
| AvaII | GGWCC | 1 cut(s) | 111 |
| AvrII | CCTAGG | 1 cut(s) | 287 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BanII | GRGCYC | 2 cut(s) | 60, 286 |
| Bbv12I | GWGCWC | 1 cut(s) | 286 |
| BccI | CCATC | 2 cut(s) | 38, 141 |
| BcnI | CCSGG | 5 cut(s) | 273, 380, 435, 436, 467 |
| BcoDI | GTCTC | 1 cut(s) | 247 |
| BfaI | CTAG | 2 cut(s) | 17, 288 |
| BisI | GCNGC | 3 cut(s) | 121, 305, 478 |
| BlnI | CCTAGG | 1 cut(s) | 287 |
| BlsI | GCNGC | 3 cut(s) | 122, 306, 479 |
| Bme1390I | CCNGG | 5 cut(s) | 273, 380, 435, 436, 467 |
| Bme18I | GGWCC | 1 cut(s) | 111 |
| BmeT110I | CYCGRG | 1 cut(s) | 434 |
| BmgT120I | GGNCC | 1 cut(s) | 111 |
| BmiI | GGNNCC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 5 cut(s) | 273, 380, 435, 436, 467 |
| BmsI | GCATC | 2 cut(s) | 132, 360 |
| BpuMI | CCSGG | 5 cut(s) | 273, 380, 435, 436, 467 |
| BsaJI | CCNNGG | 3 cut(s) | 287, 434, 435 |
| BsaWI | WCCGGW | 3 cut(s) | 113, 182, 199 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 311, 341 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 385, 436 |
| Bse118I | RCCGGY | 5 cut(s) | 35, 113, 182, 207, 247 |
| BseAI | TCCGGA | 1 cut(s) | 199 |
| BseDI | CCNNGG | 3 cut(s) | 287, 434, 435 |
| BseGI | GGATG | 2 cut(s) | 123, 156 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 385, 436 |
| BseX3I | CGGCCG | 2 cut(s) | 274, 302 |
| Bsh1236I | CGCG | 7 cut(s) | 120, 145, 307, 459, 480, 482, 509 |
| Bsh1285I | CGRYCG | 6 cut(s) | 118, 183, 277, 305, 457, 513 |
| BshFI | GGCC | 4 cut(s) | 39, 72, 276, 304 |
| BshTI | ACCGGT | 2 cut(s) | 113, 182 |
| BsiEI | CGRYCG | 6 cut(s) | 118, 183, 277, 305, 457, 513 |
| BsiHKAI | GWGCWC | 1 cut(s) | 286 |
| BsiHKCI | CYCGRG | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 385, 436 |
| BsmAI | GTCTC | 1 cut(s) | 247 |
| BsnI | GGCC | 4 cut(s) | 39, 72, 276, 304 |
| BsoBI | CYCGRG | 1 cut(s) | 434 |
| Bsp1286I | GDGCHC | 2 cut(s) | 60, 286 |
| Bsp13I | TCCGGA | 1 cut(s) | 199 |
| Bsp143I | GATC | 2 cut(s) | 454, 483 |
| BspACI | CCGC | 9 cut(s) | 120, 132, 143, 261, 305, 407, 413, 478, 509 |
| BspANI | GGCC | 4 cut(s) | 39, 72, 276, 304 |
| BspEI | TCCGGA | 1 cut(s) | 199 |
| BspFNI | CGCG | 7 cut(s) | 120, 145, 307, 459, 480, 482, 509 |
| BspLI | GGNNCC | 1 cut(s) | 136 |
| BsrFI | RCCGGY | 5 cut(s) | 35, 113, 182, 207, 247 |
| BssAI | RCCGGY | 5 cut(s) | 35, 113, 182, 207, 247 |
| BssECI | CCNNGG | 3 cut(s) | 287, 434, 435 |
| BssMI | GATC | 2 cut(s) | 454, 483 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 1 cut(s) | 388 |
| Bst6I | CTCTTC | 1 cut(s) | 271 |
| BstC8I | GCNNGC | 3 cut(s) | 249, 463, 507 |
| BstF5I | GGATG | 2 cut(s) | 123, 156 |
| BstFNI | CGCG | 7 cut(s) | 120, 145, 307, 459, 480, 482, 509 |
| BstHHI | GCGC | 2 cut(s) | 461, 482 |
| BstKTI | GATC | 2 cut(s) | 457, 486 |
| BstMAI | GTCTC | 1 cut(s) | 247 |
| BstMBI | GATC | 2 cut(s) | 454, 483 |
| BstMCI | CGRYCG | 6 cut(s) | 118, 183, 277, 305, 457, 513 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 64, 129, 467 |
| BstSCI | CCNGG | 5 cut(s) | 271, 378, 433, 434, 465 |
| BstUI | CGCG | 7 cut(s) | 120, 145, 307, 459, 480, 482, 509 |
| BstZI | CGGCCG | 2 cut(s) | 274, 302 |
| BsuRI | GGCC | 4 cut(s) | 39, 72, 276, 304 |
| BtgZI | GCGATG | 1 cut(s) | 160 |
| BtsCI | GGATG | 2 cut(s) | 123, 156 |
| Cac8I | GCNNGC | 3 cut(s) | 249, 463, 507 |
| CfoI | GCGC | 2 cut(s) | 461, 482 |
| Cfr10I | RCCGGY | 5 cut(s) | 35, 113, 182, 207, 247 |
| Cfr13I | GGNCC | 1 cut(s) | 111 |
| Cfr9I | CCCGGG | 1 cut(s) | 434 |
| CpoI | CGGWCCG | 1 cut(s) | 111 |
| Csp6I | GTAC | 2 cut(s) | 222, 317 |
| CspAI | ACCGGT | 2 cut(s) | 113, 182 |
| CspI | CGGWCCG | 1 cut(s) | 111 |
| CviAII | CATG | 2 cut(s) | 68, 422 |
| CviQI | GTAC | 2 cut(s) | 222, 317 |
| DpnI | GATC | 2 cut(s) | 456, 485 |
| DpnII | GATC | 2 cut(s) | 454, 483 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 389 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 389 |
| EaeI | YGGCCR | 3 cut(s) | 70, 274, 302 |
| EagI | CGGCCG | 2 cut(s) | 274, 302 |
| Eam1104I | CTCTTC | 1 cut(s) | 271 |
| EarI | CTCTTC | 1 cut(s) | 271 |
| EciI | GGCGGA | 1 cut(s) | 250 |
| Ecl136II | GAGCTC | 1 cut(s) | 284 |
| EclXI | CGGCCG | 2 cut(s) | 274, 302 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco24I | GRGCYC | 2 cut(s) | 60, 286 |
| Eco32I | GATATC | 1 cut(s) | 22 |
| Eco47I | GGWCC | 1 cut(s) | 111 |
| Eco52I | CGGCCG | 2 cut(s) | 274, 302 |
| Eco53kI | GAGCTC | 1 cut(s) | 284 |
| Eco88I | CYCGRG | 1 cut(s) | 434 |
| EcoICRI | GAGCTC | 1 cut(s) | 284 |
| EcoRV | GATATC | 1 cut(s) | 22 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| EcoT38I | GRGCYC | 2 cut(s) | 60, 286 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| FaeI | CATG | 2 cut(s) | 71, 425 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 305, 337 |
| FatI | CATG | 2 cut(s) | 67, 421 |
| FauI | CCCGC | 3 cut(s) | 150, 414, 420 |
| FblI | GTMKAC | 2 cut(s) | 229, 513 |
| Fnu4HI | GCNGC | 3 cut(s) | 121, 305, 478 |
| FokI | GGATG | 2 cut(s) | 110, 163 |
| FriOI | GRGCYC | 2 cut(s) | 60, 286 |
| Fsp4HI | GCNGC | 3 cut(s) | 121, 305, 478 |
| FspBI | CTAG | 2 cut(s) | 17, 288 |
| GlaI | GCGC | 2 cut(s) | 460, 481 |
| GluI | GCNGC | 3 cut(s) | 121, 305, 478 |
| HaeIII | GGCC | 4 cut(s) | 39, 72, 276, 304 |
| HhaI | GCGC | 2 cut(s) | 461, 482 |
| Hin1II | CATG | 2 cut(s) | 71, 425 |
| Hin6I | GCGC | 2 cut(s) | 459, 480 |
| HinP1I | GCGC | 2 cut(s) | 459, 480 |
| HincII | GTYRAC | 1 cut(s) | 514 |
| HindII | GTYRAC | 1 cut(s) | 514 |
| HinfI | GANTC | 4 cut(s) | 80, 90, 402, 440 |
| HphI | GGTGA | 2 cut(s) | 25, 261 |
| Hpy166II | GTNNAC | 3 cut(s) | 230, 319, 514 |
| Hpy188I | TCNGA | 1 cut(s) | 111 |
| Hpy188III | TCNNGA | 1 cut(s) | 200 |
| Hpy8I | GTNNAC | 3 cut(s) | 230, 319, 514 |
| Hpy99I | CGWCG | 3 cut(s) | 56, 282, 518 |
| HpyAV | CCTTC | 1 cut(s) | 440 |
| HpyCH4III | ACNGT | 1 cut(s) | 388 |
| HpyCH4V | TGCA | 1 cut(s) | 67 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 64, 129, 467 |
| Hsp92II | CATG | 2 cut(s) | 71, 425 |
| HspAI | GCGC | 2 cut(s) | 459, 480 |
| Kpn2I | TCCGGA | 1 cut(s) | 199 |
| KroI | GCCGGC | 1 cut(s) | 247 |
| KroNI | GCCGGC | 1 cut(s) | 249 |
| Kzo9I | GATC | 2 cut(s) | 454, 483 |
| LmnI | GCTCC | 2 cut(s) | 169, 289 |
| LweI | GCATC | 2 cut(s) | 132, 360 |
| MaeI | CTAG | 2 cut(s) | 17, 288 |
| MalI | GATC | 2 cut(s) | 456, 485 |
| MboI | GATC | 2 cut(s) | 454, 483 |
| MboII | GAAGA | 2 cut(s) | 258, 478 |
| MhlI | GDGCHC | 2 cut(s) | 60, 286 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 2 cut(s) | 74, 523 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MnlI | CCTC | 3 cut(s) | 274, 337, 368 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| MreI | CGCCGGCG | 1 cut(s) | 247 |
| MroI | TCCGGA | 1 cut(s) | 199 |
| MroNI | GCCGGC | 1 cut(s) | 247 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| MseI | TTAA | 1 cut(s) | 8 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 1 cut(s) | 132 |
| MspR9I | CCNGG | 5 cut(s) | 273, 380, 435, 436, 467 |
| MvnI | CGCG | 7 cut(s) | 120, 145, 307, 459, 480, 482, 509 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 64, 129, 467 |
| NaeI | GCCGGC | 1 cut(s) | 249 |
| NciI | CCSGG | 5 cut(s) | 273, 380, 435, 436, 467 |
| NdeII | GATC | 2 cut(s) | 454, 483 |
| NgoMIV | GCCGGC | 1 cut(s) | 247 |
| NlaIII | CATG | 2 cut(s) | 71, 425 |
| NlaIV | GGNNCC | 1 cut(s) | 136 |
| NmeAIII | GCCGAG | 1 cut(s) | 280 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 513 |
| PdiI | GCCGGC | 1 cut(s) | 249 |
| PfeI | GAWTC | 4 cut(s) | 80, 90, 402, 440 |
| PinAI | ACCGGT | 2 cut(s) | 113, 182 |
| PkrI | GCNGC | 3 cut(s) | 122, 306, 479 |
| Ple19I | CGATCG | 1 cut(s) | 457 |
| Psp124BI | GAGCTC | 1 cut(s) | 286 |
| PspN4I | GGNNCC | 1 cut(s) | 136 |
| PspPI | GGNCC | 1 cut(s) | 111 |
| PvuI | CGATCG | 1 cut(s) | 457 |
| RgaI | GCGATCGC | 1 cut(s) | 457 |
| RsaI | GTAC | 2 cut(s) | 223, 318 |
| RsaNI | GTAC | 2 cut(s) | 222, 317 |
| Rsr2I | CGGWCCG | 1 cut(s) | 111 |
| RsrII | CGGWCCG | 1 cut(s) | 111 |
| SacI | GAGCTC | 1 cut(s) | 286 |
| SalI | GTCGAC | 1 cut(s) | 512 |
| SaqAI | TTAA | 1 cut(s) | 8 |
| SatI | GCNGC | 3 cut(s) | 121, 305, 478 |
| Sau3AI | GATC | 2 cut(s) | 454, 483 |
| Sau96I | GGNCC | 1 cut(s) | 111 |
| ScrFI | CCNGG | 5 cut(s) | 273, 380, 435, 436, 467 |
| SduI | GDGCHC | 2 cut(s) | 60, 286 |
| SetI | ASST | 6 cut(s) | 14, 46, 286, 293, 318, 360 |
| SfaAI | GCGATCGC | 1 cut(s) | 457 |
| SfaNI | GCATC | 2 cut(s) | 132, 360 |
| SgfI | GCGATCGC | 1 cut(s) | 457 |
| SgrAI | CRCCGGYG | 1 cut(s) | 247 |
| SinI | GGWCC | 1 cut(s) | 111 |
| SmaI | CCCGGG | 1 cut(s) | 436 |
| Sse9I | AATT | 2 cut(s) | 74, 523 |
| SsiI | CCGC | 9 cut(s) | 120, 132, 143, 261, 305, 407, 413, 478, 509 |
| SspMI | CTAG | 2 cut(s) | 17, 288 |
| SstI | GAGCTC | 1 cut(s) | 286 |
| StyD4I | CCNGG | 5 cut(s) | 271, 378, 433, 434, 465 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 1 cut(s) | 388 |
| TaqI | TCGA | 2 cut(s) | 336, 513 |
| TasI | AATT | 2 cut(s) | 74, 523 |
| TauI | GCSGC | 3 cut(s) | 123, 307, 480 |
| TfiI | GAWTC | 4 cut(s) | 80, 90, 402, 440 |
| Tru1I | TTAA | 1 cut(s) | 8 |
| Tru9I | TTAA | 1 cut(s) | 8 |
| TspDTI | ATGAA | 1 cut(s) | 543 |
| TspMI | CCCGGG | 1 cut(s) | 434 |
| VpaK11BI | GGWCC | 1 cut(s) | 111 |
| XmaI | CCCGGG | 1 cut(s) | 434 |
| XmaJI | CCTAGG | 1 cut(s) | 287 |
| XmiI | GTMKAC | 2 cut(s) | 229, 513 |
| XspI | CTAG | 2 cut(s) | 17, 288 |