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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 399 |
| AciI | CCGC | 4 cut(s) | 36, 135, 279, 372 |
| AclWI | GGATC | 1 cut(s) | 150 |
| AcoI | YGGCCR | 1 cut(s) | 33 |
| AfaI | GTAC | 2 cut(s) | 16, 413 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 172 |
| AgeI | ACCGGT | 1 cut(s) | 203 |
| AluBI | AGCT | 2 cut(s) | 7, 70 |
| AluI | AGCT | 2 cut(s) | 7, 70 |
| AlwI | GGATC | 1 cut(s) | 150 |
| AoxI | GGCC | 3 cut(s) | 33, 54, 292 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| AsiGI | ACCGGT | 1 cut(s) | 203 |
| AspLEI | GCGC | 2 cut(s) | 229, 342 |
| AspS9I | GGNCC | 4 cut(s) | 163, 257, 293, 348 |
| AsuHPI | GGTGA | 1 cut(s) | 280 |
| AvaII | GGWCC | 3 cut(s) | 163, 257, 348 |
| BanI | GGYRCC | 1 cut(s) | 399 |
| BauI | CACGAG | 1 cut(s) | 382 |
| BbsI | GAAGAC | 1 cut(s) | 187 |
| BbvI | GCAGC | 1 cut(s) | 124 |
| BceAI | ACGGC | 1 cut(s) | 41 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 389, 423 |
| BfoI | RGCGCY | 2 cut(s) | 230, 343 |
| BisI | GCNGC | 3 cut(s) | 36, 135, 138 |
| BlsI | GCNGC | 3 cut(s) | 37, 136, 139 |
| Bme18I | GGWCC | 3 cut(s) | 163, 257, 348 |
| BmgT120I | GGNCC | 4 cut(s) | 163, 257, 293, 348 |
| BmiI | GGNNCC | 1 cut(s) | 401 |
| BoxI | GACNNNNGTC | 1 cut(s) | 28 |
| BpiI | GAAGAC | 1 cut(s) | 187 |
| BpuEI | CTTGAG | 3 cut(s) | 92, 282, 320 |
| BsaAI | YACGTR | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 2 cut(s) | 159, 171 |
| BsaWI | WCCGGW | 1 cut(s) | 203 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 33 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 172 |
| Bse118I | RCCGGY | 2 cut(s) | 203, 290 |
| BseDI | CCNNGG | 2 cut(s) | 159, 171 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BseRI | GAGGAG | 1 cut(s) | 260 |
| BseX3I | CGGCCG | 1 cut(s) | 33 |
| BseXI | GCAGC | 1 cut(s) | 124 |
| Bsh1285I | CGRYCG | 4 cut(s) | 36, 200, 204, 391 |
| BshFI | GGCC | 3 cut(s) | 35, 56, 294 |
| BshNI | GGYRCC | 1 cut(s) | 399 |
| BshTI | ACCGGT | 1 cut(s) | 203 |
| BsiEI | CGRYCG | 4 cut(s) | 36, 200, 204, 391 |
| BsiSI | CCGG | 3 cut(s) | 143, 204, 291 |
| BsiWI | CGTACG | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 172 |
| BsnI | GGCC | 3 cut(s) | 35, 56, 294 |
| Bsp143I | GATC | 3 cut(s) | 155, 197, 388 |
| BspACI | CCGC | 4 cut(s) | 36, 135, 279, 372 |
| BspANI | GGCC | 3 cut(s) | 35, 56, 294 |
| BspLI | GGNNCC | 1 cut(s) | 401 |
| BspPI | GGATC | 1 cut(s) | 150 |
| BspT107I | GGYRCC | 1 cut(s) | 399 |
| BsrFI | RCCGGY | 2 cut(s) | 203, 290 |
| BssAI | RCCGGY | 2 cut(s) | 203, 290 |
| BssECI | CCNNGG | 2 cut(s) | 159, 171 |
| BssMI | GATC | 3 cut(s) | 155, 197, 388 |
| BssSI | CACGAG | 1 cut(s) | 382 |
| Bst2BI | CACGAG | 1 cut(s) | 382 |
| Bst4CI | ACNGT | 2 cut(s) | 30, 348 |
| Bst6I | CTCTTC | 1 cut(s) | 94 |
| BstBAI | YACGTR | 1 cut(s) | 14 |
| BstC8I | GCNNGC | 1 cut(s) | 148 |
| BstDSI | CCRYGG | 1 cut(s) | 171 |
| BstH2I | RGCGCY | 2 cut(s) | 230, 343 |
| BstHHI | GCGC | 2 cut(s) | 229, 342 |
| BstKTI | GATC | 3 cut(s) | 158, 200, 391 |
| BstMBI | GATC | 3 cut(s) | 155, 197, 388 |
| BstMCI | CGRYCG | 4 cut(s) | 36, 200, 204, 391 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 143 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 28 |
| BstV1I | GCAGC | 1 cut(s) | 124 |
| BstV2I | GAAGAC | 1 cut(s) | 187 |
| BstZI | CGGCCG | 1 cut(s) | 33 |
| BsuRI | GGCC | 3 cut(s) | 35, 56, 294 |
| BtgI | CCRYGG | 1 cut(s) | 171 |
| Cac8I | GCNNGC | 1 cut(s) | 148 |
| CfoI | GCGC | 2 cut(s) | 229, 342 |
| Cfr10I | RCCGGY | 2 cut(s) | 203, 290 |
| Cfr13I | GGNCC | 4 cut(s) | 163, 257, 293, 348 |
| CpoI | CGGWCCG | 1 cut(s) | 163 |
| Csp6I | GTAC | 2 cut(s) | 15, 412 |
| CspAI | ACCGGT | 1 cut(s) | 203 |
| CspI | CGGWCCG | 1 cut(s) | 163 |
| CviJI | RGCY | 7 cut(s) | 7, 35, 56, 70, 146, 294, 318 |
| CviKI_1 | RGCY | 7 cut(s) | 7, 35, 56, 70, 146, 294, 318 |
| CviQI | GTAC | 2 cut(s) | 15, 412 |
| DpnI | GATC | 3 cut(s) | 157, 199, 390 |
| DpnII | GATC | 3 cut(s) | 155, 197, 388 |
| EaeI | YGGCCR | 1 cut(s) | 33 |
| EagI | CGGCCG | 1 cut(s) | 33 |
| Eam1104I | CTCTTC | 1 cut(s) | 94 |
| EarI | CTCTTC | 1 cut(s) | 94 |
| EciI | GGCGGA | 1 cut(s) | 361 |
| EclXI | CGGCCG | 1 cut(s) | 33 |
| Eco47I | GGWCC | 3 cut(s) | 163, 257, 348 |
| Eco52I | CGGCCG | 1 cut(s) | 33 |
| FaiI | YATR | 1 cut(s) | 263 |
| FauI | CCCGC | 1 cut(s) | 272 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 135, 138 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 135, 138 |
| GlaI | GCGC | 2 cut(s) | 228, 341 |
| GluI | GCNGC | 3 cut(s) | 36, 135, 138 |
| HaeII | RGCGCY | 2 cut(s) | 230, 343 |
| HaeIII | GGCC | 3 cut(s) | 35, 56, 294 |
| HapII | CCGG | 3 cut(s) | 143, 204, 291 |
| HhaI | GCGC | 2 cut(s) | 229, 342 |
| Hin6I | GCGC | 2 cut(s) | 227, 340 |
| HinP1I | GCGC | 2 cut(s) | 227, 340 |
| HindIII | AAGCTT | 1 cut(s) | 68 |
| HinfI | GANTC | 1 cut(s) | 83 |
| HpaII | CCGG | 3 cut(s) | 143, 204, 291 |
| HphI | GGTGA | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 2 cut(s) | 23, 163 |
| Hpy188III | TCNNGA | 3 cut(s) | 299, 382, 420 |
| Hpy99I | CGWCG | 1 cut(s) | 34 |
| HpyAV | CCTTC | 1 cut(s) | 307 |
| HpyCH4III | ACNGT | 2 cut(s) | 30, 348 |
| HpyCH4IV | ACGT | 1 cut(s) | 13 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 143 |
| HpySE526I | ACGT | 1 cut(s) | 13 |
| HspAI | GCGC | 2 cut(s) | 227, 340 |
| Kzo9I | GATC | 3 cut(s) | 155, 197, 388 |
| LmnI | GCTCC | 2 cut(s) | 24, 145 |
| LpnPI | CCDG | 3 cut(s) | 156, 217, 304 |
| Lsp1109I | GCAGC | 1 cut(s) | 124 |
| MaeII | ACGT | 1 cut(s) | 13 |
| MaeIII | GTNAC | 2 cut(s) | 286, 379 |
| MalI | GATC | 3 cut(s) | 157, 199, 390 |
| MboI | GATC | 3 cut(s) | 155, 197, 388 |
| MboII | GAAGA | 4 cut(s) | 81, 92, 189, 192 |
| MmeI | TCCRAC | 2 cut(s) | 46, 375 |
| MnlI | CCTC | 7 cut(s) | 35, 67, 97, 169, 281, 306, 379 |
| MseI | TTAA | 2 cut(s) | 113, 249 |
| MspA1I | CMGCKG | 1 cut(s) | 137 |
| MspI | CCGG | 3 cut(s) | 143, 204, 291 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 143 |
| NdeII | GATC | 3 cut(s) | 155, 197, 388 |
| NlaIV | GGNNCC | 1 cut(s) | 401 |
| NmuCI | GTSAC | 2 cut(s) | 286, 379 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 19 |
| PfeI | GAWTC | 1 cut(s) | 83 |
| Pfl23II | CGTACG | 1 cut(s) | 14 |
| PinAI | ACCGGT | 1 cut(s) | 203 |
| PkrI | GCNGC | 3 cut(s) | 37, 136, 139 |
| Ple19I | CGATCG | 2 cut(s) | 200, 391 |
| Ppu21I | YACGTR | 1 cut(s) | 14 |
| PshAI | GACNNNNGTC | 1 cut(s) | 28 |
| PspLI | CGTACG | 1 cut(s) | 14 |
| PspN4I | GGNNCC | 1 cut(s) | 401 |
| PspPI | GGNCC | 4 cut(s) | 163, 257, 293, 348 |
| PvuI | CGATCG | 2 cut(s) | 200, 391 |
| RsaI | GTAC | 2 cut(s) | 16, 413 |
| RsaNI | GTAC | 2 cut(s) | 15, 412 |
| Rsr2I | CGGWCCG | 1 cut(s) | 163 |
| RsrII | CGGWCCG | 1 cut(s) | 163 |
| SaqAI | TTAA | 2 cut(s) | 113, 249 |
| SatI | GCNGC | 3 cut(s) | 36, 135, 138 |
| Sau3AI | GATC | 3 cut(s) | 155, 197, 388 |
| Sau96I | GGNCC | 4 cut(s) | 163, 257, 293, 348 |
| SetI | ASST | 5 cut(s) | 9, 16, 72, 78, 371 |
| SinI | GGWCC | 3 cut(s) | 163, 257, 348 |
| SmlI | CTYRAG | 3 cut(s) | 71, 297, 335 |
| SmoI | CTYRAG | 3 cut(s) | 71, 297, 335 |
| SsiI | CCGC | 4 cut(s) | 36, 135, 279, 372 |
| TaaI | ACNGT | 2 cut(s) | 30, 348 |
| TaiI | ACGT | 1 cut(s) | 16 |
| TaqI | TCGA | 2 cut(s) | 78, 200 |
| TaqII | GACCGA | 1 cut(s) | 180 |
| TauI | GCSGC | 2 cut(s) | 38, 137 |
| TfiI | GAWTC | 1 cut(s) | 83 |
| Tru1I | TTAA | 2 cut(s) | 113, 249 |
| Tru9I | TTAA | 2 cut(s) | 113, 249 |
| TseFI | GTSAC | 2 cut(s) | 286, 379 |
| TseI | GCWGC | 1 cut(s) | 137 |
| Tsp45I | GTSAC | 2 cut(s) | 286, 379 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 3 cut(s) | 163, 257, 348 |