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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 334 |
| AccBSI | CCGCTC | 1 cut(s) | 200 |
| AccII | CGCG | 5 cut(s) | 96, 136, 222, 228, 494 |
| AciI | CCGC | 7 cut(s) | 34, 134, 200, 220, 226, 329, 574 |
| AcuI | CTGAAG | 1 cut(s) | 349 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 419, 510 |
| AgsI | TTSAA | 1 cut(s) | 358 |
| AluBI | AGCT | 8 cut(s) | 108, 179, 234, 309, 363, 417, 438, 520 |
| AluI | AGCT | 8 cut(s) | 108, 179, 234, 309, 363, 417, 438, 520 |
| Alw21I | GWGCWC | 2 cut(s) | 110, 165 |
| Alw26I | GTCTC | 1 cut(s) | 476 |
| Alw44I | GTGCAC | 1 cut(s) | 161 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 75 |
| Ama87I | CYCGRG | 1 cut(s) | 37 |
| AoxI | GGCC | 7 cut(s) | 154, 260, 280, 368, 389, 410, 576 |
| ApaLI | GTGCAC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 2 cut(s) | 520, 523 |
| AscI | GGCGCGCC | 1 cut(s) | 94 |
| AspLEI | GCGC | 3 cut(s) | 96, 98, 230 |
| AspS9I | GGNCC | 7 cut(s) | 72, 323, 347, 369, 390, 411, 576 |
| AsuC2I | CCSGG | 1 cut(s) | 91 |
| AsuHPI | GGTGA | 1 cut(s) | 417 |
| AsuII | TTCGAA | 1 cut(s) | 461 |
| AvaI | CYCGRG | 1 cut(s) | 37 |
| AvaII | GGWCC | 3 cut(s) | 72, 323, 347 |
| BaeGI | GKGCMC | 1 cut(s) | 165 |
| BanII | GRGCYC | 1 cut(s) | 110 |
| Bbv12I | GWGCWC | 2 cut(s) | 110, 165 |
| BbvCI | CCTCAGC | 1 cut(s) | 434 |
| BbvI | GCAGC | 2 cut(s) | 507, 510 |
| BceAI | ACGGC | 1 cut(s) | 425 |
| BcnI | CCSGG | 1 cut(s) | 91 |
| BcoDI | GTCTC | 1 cut(s) | 476 |
| BfaI | CTAG | 3 cut(s) | 235, 439, 533 |
| BfuAI | ACCTGC | 1 cut(s) | 334 |
| BisI | GCNGC | 3 cut(s) | 134, 521, 524 |
| BlsI | GCNGC | 3 cut(s) | 135, 522, 525 |
| Bme1390I | CCNGG | 1 cut(s) | 91 |
| Bme18I | GGWCC | 3 cut(s) | 72, 323, 347 |
| BmeT110I | CYCGRG | 1 cut(s) | 37 |
| BmgT120I | GGNCC | 7 cut(s) | 72, 323, 347, 369, 390, 411, 576 |
| BmiI | GGNNCC | 2 cut(s) | 324, 431 |
| BmrFI | CCNGG | 1 cut(s) | 91 |
| BmrI | ACTGGG | 1 cut(s) | 387 |
| BmuI | ACTGGG | 1 cut(s) | 387 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 298, 330 |
| Bpu10I | CCTNAGC | 2 cut(s) | 109, 434 |
| Bpu14I | TTCGAA | 1 cut(s) | 461 |
| BpuEI | CTTGAG | 1 cut(s) | 216 |
| BpuMI | CCSGG | 1 cut(s) | 91 |
| BsaJI | CCNNGG | 1 cut(s) | 401 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 419, 510 |
| Bse1I | ACTGG | 1 cut(s) | 393 |
| Bse3DI | GCAATG | 1 cut(s) | 473 |
| BseDI | CCNNGG | 1 cut(s) | 401 |
| BseGI | GGATG | 1 cut(s) | 552 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 419, 510 |
| BseMI | GCAATG | 1 cut(s) | 473 |
| BseMII | CTCAG | 4 cut(s) | 123, 142, 448, 487 |
| BseNI | ACTGG | 1 cut(s) | 393 |
| BsePI | GCGCGC | 1 cut(s) | 94 |
| BseRI | GAGGAG | 1 cut(s) | 526 |
| BseSI | GKGCMC | 1 cut(s) | 165 |
| BseXI | GCAGC | 2 cut(s) | 507, 510 |
| BseYI | CCCAGC | 1 cut(s) | 413 |
| Bsh1236I | CGCG | 5 cut(s) | 96, 136, 222, 228, 494 |
| Bsh1285I | CGRYCG | 2 cut(s) | 220, 226 |
| BshFI | GGCC | 7 cut(s) | 156, 262, 282, 370, 391, 412, 578 |
| BsiEI | CGRYCG | 2 cut(s) | 220, 226 |
| BsiHKAI | GWGCWC | 2 cut(s) | 110, 165 |
| BsiHKCI | CYCGRG | 1 cut(s) | 37 |
| BsiSI | CCGG | 1 cut(s) | 90 |
| BslFI | GGGAC | 1 cut(s) | 336 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 419, 510 |
| BsmAI | GTCTC | 1 cut(s) | 476 |
| BsmFI | GGGAC | 1 cut(s) | 336 |
| BsnI | GGCC | 7 cut(s) | 156, 262, 282, 370, 391, 412, 578 |
| BsoBI | CYCGRG | 1 cut(s) | 37 |
| Bsp119I | TTCGAA | 1 cut(s) | 461 |
| Bsp1286I | GDGCHC | 2 cut(s) | 110, 165 |
| BspACI | CCGC | 7 cut(s) | 34, 134, 200, 220, 226, 329, 574 |
| BspANI | GGCC | 7 cut(s) | 156, 262, 282, 370, 391, 412, 578 |
| BspCNI | CTCAG | 4 cut(s) | 122, 143, 447, 486 |
| BspFNI | CGCG | 5 cut(s) | 96, 136, 222, 228, 494 |
| BspLI | GGNNCC | 2 cut(s) | 324, 431 |
| BspMI | ACCTGC | 1 cut(s) | 334 |
| BspT104I | TTCGAA | 1 cut(s) | 461 |
| BsrBI | CCGCTC | 1 cut(s) | 200 |
| BsrDI | GCAATG | 1 cut(s) | 473 |
| BsrI | ACTGG | 1 cut(s) | 393 |
| BssECI | CCNNGG | 1 cut(s) | 401 |
| BssHII | GCGCGC | 1 cut(s) | 94 |
| Bst4CI | ACNGT | 1 cut(s) | 405 |
| BstBI | TTCGAA | 1 cut(s) | 461 |
| BstC8I | GCNNGC | 6 cut(s) | 96, 100, 232, 492, 518, 576 |
| BstDEI | CTNAG | 5 cut(s) | 109, 151, 434, 473, 480 |
| BstDSI | CCRYGG | 1 cut(s) | 401 |
| BstF5I | GGATG | 1 cut(s) | 552 |
| BstFNI | CGCG | 5 cut(s) | 96, 136, 222, 228, 494 |
| BstHHI | GCGC | 3 cut(s) | 96, 98, 230 |
| BstMAI | GTCTC | 1 cut(s) | 476 |
| BstMCI | CGRYCG | 2 cut(s) | 220, 226 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 60, 236, 335, 463, 496, 529 |
| BstSCI | CCNGG | 1 cut(s) | 89 |
| BstSLI | GKGCMC | 1 cut(s) | 165 |
| BstUI | CGCG | 5 cut(s) | 96, 136, 222, 228, 494 |
| BstV1I | GCAGC | 2 cut(s) | 507, 510 |
| BsuRI | GGCC | 7 cut(s) | 156, 262, 282, 370, 391, 412, 578 |
| BtgI | CCRYGG | 1 cut(s) | 401 |
| BtsCI | GGATG | 1 cut(s) | 552 |
| BtsIMutI | CAGTG | 1 cut(s) | 148 |
| BveI | ACCTGC | 1 cut(s) | 334 |
| Cac8I | GCNNGC | 6 cut(s) | 96, 100, 232, 492, 518, 576 |
| CaiI | CAGNNNCTG | 1 cut(s) | 75 |
| CfoI | GCGC | 3 cut(s) | 96, 98, 230 |
| Cfr13I | GGNCC | 7 cut(s) | 72, 323, 347, 369, 390, 411, 576 |
| CseI | GACGC | 1 cut(s) | 538 |
| CviAII | CATG | 3 cut(s) | 25, 122, 571 |
| DdeI | CTNAG | 5 cut(s) | 109, 151, 434, 473, 480 |
| Ecl136II | GAGCTC | 1 cut(s) | 108 |
| Eco147I | AGGCCT | 2 cut(s) | 262, 282 |
| Eco24I | GRGCYC | 1 cut(s) | 110 |
| Eco47I | GGWCC | 3 cut(s) | 72, 323, 347 |
| Eco53kI | GAGCTC | 1 cut(s) | 108 |
| Eco57I | CTGAAG | 1 cut(s) | 349 |
| Eco88I | CYCGRG | 1 cut(s) | 37 |
| EcoICRI | GAGCTC | 1 cut(s) | 108 |
| EcoO109I | RGGNCCY | 2 cut(s) | 72, 323 |
| EcoT38I | GRGCYC | 1 cut(s) | 110 |
| FaeI | CATG | 3 cut(s) | 28, 125, 574 |
| FaiI | YATR | 5 cut(s) | 26, 123, 173, 175, 572 |
| FaqI | GGGAC | 1 cut(s) | 336 |
| FatI | CATG | 3 cut(s) | 24, 121, 570 |
| FauI | CCCGC | 2 cut(s) | 41, 567 |
| Fnu4HI | GCNGC | 3 cut(s) | 134, 521, 524 |
| FokI | GGATG | 1 cut(s) | 559 |
| FriOI | GRGCYC | 1 cut(s) | 110 |
| Fsp4HI | GCNGC | 3 cut(s) | 134, 521, 524 |
| FspBI | CTAG | 3 cut(s) | 235, 439, 533 |
| GlaI | GCGC | 3 cut(s) | 95, 97, 229 |
| GluI | GCNGC | 3 cut(s) | 134, 521, 524 |
| GsaI | CCCAGC | 1 cut(s) | 417 |
| HaeIII | GGCC | 7 cut(s) | 156, 262, 282, 370, 391, 412, 578 |
| HapII | CCGG | 1 cut(s) | 90 |
| HgaI | GACGC | 1 cut(s) | 538 |
| HhaI | GCGC | 3 cut(s) | 96, 98, 230 |
| Hin1II | CATG | 3 cut(s) | 28, 125, 574 |
| Hin6I | GCGC | 3 cut(s) | 94, 96, 228 |
| HinP1I | GCGC | 3 cut(s) | 94, 96, 228 |
| HincII | GTYRAC | 1 cut(s) | 398 |
| HindII | GTYRAC | 1 cut(s) | 398 |
| HpaII | CCGG | 1 cut(s) | 90 |
| HphI | GGTGA | 1 cut(s) | 417 |
| Hpy166II | GTNNAC | 2 cut(s) | 163, 398 |
| Hpy188I | TCNGA | 1 cut(s) | 476 |
| Hpy188III | TCNNGA | 5 cut(s) | 75, 111, 195, 358, 544 |
| Hpy8I | GTNNAC | 2 cut(s) | 163, 398 |
| Hpy99I | CGWCG | 1 cut(s) | 532 |
| HpyAV | CCTTC | 1 cut(s) | 468 |
| HpyCH4III | ACNGT | 1 cut(s) | 405 |
| HpyCH4V | TGCA | 2 cut(s) | 163, 267 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 60, 236, 335, 463, 496, 529 |
| HpyF3I | CTNAG | 5 cut(s) | 109, 151, 434, 473, 480 |
| Hsp92II | CATG | 3 cut(s) | 28, 125, 574 |
| HspAI | GCGC | 3 cut(s) | 94, 96, 228 |
| LmnI | GCTCC | 2 cut(s) | 33, 513 |
| Lsp1109I | GCAGC | 2 cut(s) | 507, 510 |
| MaeI | CTAG | 3 cut(s) | 235, 439, 533 |
| MaeIII | GTNAC | 1 cut(s) | 405 |
| MbiI | CCGCTC | 1 cut(s) | 200 |
| MboII | GAAGA | 1 cut(s) | 183 |
| MfeI | CAATTG | 1 cut(s) | 373 |
| MhlI | GDGCHC | 2 cut(s) | 110, 165 |
| MluCI | AATT | 1 cut(s) | 373 |
| MmeI | TCCRAC | 1 cut(s) | 528 |
| MnlI | CCTC | 8 cut(s) | 53, 146, 252, 272, 293, 420, 443, 504 |
| MspI | CCGG | 1 cut(s) | 90 |
| MspR9I | CCNGG | 1 cut(s) | 91 |
| MunI | CAATTG | 1 cut(s) | 373 |
| MvnI | CGCG | 5 cut(s) | 96, 136, 222, 228, 494 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 60, 236, 335, 463, 496, 529 |
| NciI | CCSGG | 1 cut(s) | 91 |
| NlaIII | CATG | 3 cut(s) | 28, 125, 574 |
| NlaIV | GGNNCC | 2 cut(s) | 324, 431 |
| NmeAIII | GCCGAG | 1 cut(s) | 182 |
| NmuCI | GTSAC | 1 cut(s) | 405 |
| NspV | TTCGAA | 1 cut(s) | 461 |
| PalAI | GGCGCGCC | 1 cut(s) | 94 |
| PauI | GCGCGC | 1 cut(s) | 94 |
| PceI | AGGCCT | 2 cut(s) | 262, 282 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 137 |
| PkrI | GCNGC | 3 cut(s) | 135, 522, 525 |
| PpuMI | RGGWCCY | 2 cut(s) | 72, 323 |
| Psp124BI | GAGCTC | 1 cut(s) | 110 |
| Psp5II | RGGWCCY | 2 cut(s) | 72, 323 |
| PspFI | CCCAGC | 1 cut(s) | 413 |
| PspN4I | GGNNCC | 2 cut(s) | 324, 431 |
| PspPI | GGNCC | 7 cut(s) | 72, 323, 347, 369, 390, 411, 576 |
| PspPPI | RGGWCCY | 2 cut(s) | 72, 323 |
| PstNI | CAGNNNCTG | 1 cut(s) | 75 |
| PteI | GCGCGC | 1 cut(s) | 94 |
| SacI | GAGCTC | 1 cut(s) | 110 |
| SatI | GCNGC | 3 cut(s) | 134, 521, 524 |
| Sau96I | GGNCC | 7 cut(s) | 72, 323, 347, 369, 390, 411, 576 |
| ScrFI | CCNGG | 1 cut(s) | 91 |
| SduI | GDGCHC | 2 cut(s) | 110, 165 |
| SfuI | TTCGAA | 1 cut(s) | 461 |
| SgsI | GGCGCGCC | 1 cut(s) | 94 |
| SinI | GGWCC | 3 cut(s) | 72, 323, 347 |
| SmlI | CTYRAG | 1 cut(s) | 195 |
| SmoI | CTYRAG | 1 cut(s) | 195 |
| Sse9I | AATT | 1 cut(s) | 373 |
| SseBI | AGGCCT | 2 cut(s) | 262, 282 |
| SsiI | CCGC | 7 cut(s) | 34, 134, 200, 220, 226, 329, 574 |
| SspI | AATATT | 1 cut(s) | 117 |
| SspMI | CTAG | 3 cut(s) | 235, 439, 533 |
| SstI | GAGCTC | 1 cut(s) | 110 |
| StuI | AGGCCT | 2 cut(s) | 262, 282 |
| StyD4I | CCNGG | 1 cut(s) | 89 |
| TaaI | ACNGT | 1 cut(s) | 405 |
| TaqI | TCGA | 3 cut(s) | 257, 380, 461 |
| TasI | AATT | 1 cut(s) | 373 |
| TauI | GCSGC | 1 cut(s) | 136 |
| TscAI | CASTG | 1 cut(s) | 155 |
| TseFI | GTSAC | 1 cut(s) | 405 |
| TseI | GCWGC | 2 cut(s) | 520, 523 |
| Tsp45I | GTSAC | 1 cut(s) | 405 |
| TspDTI | ATGAA | 2 cut(s) | 110, 563 |
| TspRI | CASTG | 1 cut(s) | 155 |
| VneI | GTGCAC | 1 cut(s) | 161 |
| VpaK11BI | GGWCC | 3 cut(s) | 72, 323, 347 |
| XspI | CTAG | 3 cut(s) | 235, 439, 533 |