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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 52, 651 |
| Acc65I | GGTACC | 1 cut(s) | 184 |
| AccB1I | GGYRCC | 1 cut(s) | 184 |
| AccBSI | CCGCTC | 1 cut(s) | 475 |
| AccI | GTMKAC | 1 cut(s) | 734 |
| AccII | CGCG | 4 cut(s) | 497, 672, 730, 799 |
| AclWI | GGATC | 5 cut(s) | 146, 191, 223, 485, 614 |
| AcuI | CTGAAG | 1 cut(s) | 276 |
| AfaI | GTAC | 2 cut(s) | 186, 393 |
| AgsI | TTSAA | 2 cut(s) | 281, 838 |
| AjnI | CCWGG | 4 cut(s) | 231, 368, 409, 772 |
| AluBI | AGCT | 4 cut(s) | 68, 170, 454, 518 |
| AluI | AGCT | 4 cut(s) | 68, 170, 454, 518 |
| Alw26I | GTCTC | 3 cut(s) | 548, 591, 750 |
| AlwI | GGATC | 5 cut(s) | 146, 191, 223, 485, 614 |
| Ama87I | CYCGRG | 1 cut(s) | 356 |
| AoxI | GGCC | 5 cut(s) | 321, 522, 535, 699, 710 |
| ApeKI | GCWGC | 3 cut(s) | 44, 176, 332 |
| Asp718I | GGTACC | 1 cut(s) | 184 |
| AspLEI | GCGC | 2 cut(s) | 109, 801 |
| AspS9I | GGNCC | 7 cut(s) | 205, 298, 322, 523, 535, 627, 640 |
| AsuC2I | CCSGG | 3 cut(s) | 638, 742, 826 |
| AsuHPI | GGTGA | 3 cut(s) | 238, 430, 587 |
| AvaI | CYCGRG | 1 cut(s) | 356 |
| AvaII | GGWCC | 4 cut(s) | 205, 298, 627, 640 |
| AxyI | CCTNAGG | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 184 |
| BanII | GRGCYC | 2 cut(s) | 363, 748 |
| BauI | CACGAG | 2 cut(s) | 125, 317 |
| BbvI | GCAGC | 3 cut(s) | 31, 163, 319 |
| BccI | CCATC | 3 cut(s) | 164, 218, 829 |
| BciT130I | CCWGG | 4 cut(s) | 233, 370, 411, 774 |
| BciVI | GTATCC | 1 cut(s) | 804 |
| BcnI | CCSGG | 3 cut(s) | 638, 742, 826 |
| BcoDI | GTCTC | 3 cut(s) | 548, 591, 750 |
| BfaI | CTAG | 2 cut(s) | 134, 841 |
| BfuAI | ACCTGC | 2 cut(s) | 52, 651 |
| BfuI | GTATCC | 1 cut(s) | 804 |
| BisI | GCNGC | 6 cut(s) | 26, 45, 138, 177, 333, 713 |
| BlsI | GCNGC | 6 cut(s) | 27, 46, 139, 178, 334, 714 |
| Bme1390I | CCNGG | 7 cut(s) | 233, 370, 411, 638, 742, 774, 826 |
| Bme18I | GGWCC | 4 cut(s) | 205, 298, 627, 640 |
| BmeT110I | CYCGRG | 1 cut(s) | 356 |
| BmgT120I | GGNCC | 7 cut(s) | 205, 298, 322, 523, 535, 627, 640 |
| BmiI | GGNNCC | 9 cut(s) | 36, 186, 207, 237, 300, 324, 536, 629, 641 |
| BmrFI | CCNGG | 7 cut(s) | 233, 370, 411, 638, 742, 774, 826 |
| BmsI | GCATC | 2 cut(s) | 328, 334 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 502, 534, 573, 605, 785, 817 |
| BpmI | CTGGAG | 2 cut(s) | 393, 795 |
| Bpu10I | CCTNAGC | 2 cut(s) | 471, 519 |
| BpuEI | CTTGAG | 1 cut(s) | 81 |
| BpuMI | CCSGG | 3 cut(s) | 638, 742, 826 |
| BsaBI | GATNNNNATC | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 4 cut(s) | 728, 741, 772, 806 |
| BsaWI | WCCGGW | 1 cut(s) | 283 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 210, 240 |
| Bse21I | CCTNAGG | 1 cut(s) | 30 |
| Bse8I | GATNNNNATC | 1 cut(s) | 116 |
| BseBI | CCWGG | 4 cut(s) | 233, 370, 411, 774 |
| BseDI | CCNNGG | 4 cut(s) | 728, 741, 772, 806 |
| BseGI | GGATG | 1 cut(s) | 821 |
| BseJI | GATNNNNATC | 1 cut(s) | 116 |
| BseMII | CTCAG | 6 cut(s) | 21, 417, 423, 462, 533, 543 |
| BseXI | GCAGC | 3 cut(s) | 31, 163, 319 |
| BsgI | GTGCAG | 2 cut(s) | 30, 107 |
| Bsh1236I | CGCG | 4 cut(s) | 497, 672, 730, 799 |
| Bsh1285I | CGRYCG | 3 cut(s) | 42, 495, 501 |
| BshFI | GGCC | 5 cut(s) | 323, 524, 537, 701, 712 |
| BshNI | GGYRCC | 1 cut(s) | 184 |
| BsiEI | CGRYCG | 3 cut(s) | 42, 495, 501 |
| BsiHKCI | CYCGRG | 1 cut(s) | 356 |
| BsiSI | CCGG | 4 cut(s) | 284, 637, 741, 826 |
| BslFI | GGGAC | 2 cut(s) | 284, 653 |
| BsmAI | GTCTC | 3 cut(s) | 548, 591, 750 |
| BsmFI | GGGAC | 2 cut(s) | 284, 653 |
| BsnI | GGCC | 5 cut(s) | 323, 524, 537, 701, 712 |
| BsoBI | CYCGRG | 1 cut(s) | 356 |
| Bsp1286I | GDGCHC | 2 cut(s) | 363, 748 |
| Bsp143I | GATC | 6 cut(s) | 39, 151, 196, 228, 477, 606 |
| BspANI | GGCC | 5 cut(s) | 323, 524, 537, 701, 712 |
| BspCNI | CTCAG | 6 cut(s) | 22, 418, 424, 463, 532, 544 |
| BspFNI | CGCG | 4 cut(s) | 497, 672, 730, 799 |
| BspLI | GGNNCC | 9 cut(s) | 36, 186, 207, 237, 300, 324, 536, 629, 641 |
| BspMI | ACCTGC | 2 cut(s) | 52, 651 |
| BspPI | GGATC | 5 cut(s) | 146, 191, 223, 485, 614 |
| BspT107I | GGYRCC | 1 cut(s) | 184 |
| BsrBI | CCGCTC | 1 cut(s) | 475 |
| BssECI | CCNNGG | 4 cut(s) | 728, 741, 772, 806 |
| BssMI | GATC | 6 cut(s) | 39, 151, 196, 228, 477, 606 |
| BssSI | CACGAG | 2 cut(s) | 125, 317 |
| BssT1I | CCWWGG | 1 cut(s) | 806 |
| Bst2BI | CACGAG | 2 cut(s) | 125, 317 |
| Bst2UI | CCWGG | 4 cut(s) | 233, 370, 411, 774 |
| Bst6I | CTCTTC | 1 cut(s) | 370 |
| BstC8I | GCNNGC | 5 cut(s) | 105, 240, 516, 717, 803 |
| BstDEI | CTNAG | 7 cut(s) | 2, 30, 426, 432, 471, 519, 552 |
| BstDSI | CCRYGG | 1 cut(s) | 728 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 59, 367 |
| BstF5I | GGATG | 1 cut(s) | 821 |
| BstFNI | CGCG | 4 cut(s) | 497, 672, 730, 799 |
| BstHHI | GCGC | 2 cut(s) | 109, 801 |
| BstKTI | GATC | 6 cut(s) | 42, 154, 199, 231, 480, 609 |
| BstMAI | GTCTC | 3 cut(s) | 548, 591, 750 |
| BstMBI | GATC | 6 cut(s) | 39, 151, 196, 228, 477, 606 |
| BstMCI | CGRYCG | 3 cut(s) | 42, 495, 501 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 113, 176, 200, 329, 338, 515 |
| BstNI | CCWGG | 4 cut(s) | 233, 370, 411, 774 |
| BstSCI | CCNGG | 7 cut(s) | 231, 368, 409, 636, 740, 772, 824 |
| BstUI | CGCG | 4 cut(s) | 497, 672, 730, 799 |
| BstV1I | GCAGC | 3 cut(s) | 31, 163, 319 |
| Bsu36I | CCTNAGG | 1 cut(s) | 30 |
| BsuI | GTATCC | 1 cut(s) | 804 |
| BsuRI | GGCC | 5 cut(s) | 323, 524, 537, 701, 712 |
| BtgI | CCRYGG | 1 cut(s) | 728 |
| BtsCI | GGATG | 1 cut(s) | 821 |
| BveI | ACCTGC | 2 cut(s) | 52, 651 |
| Cac8I | GCNNGC | 5 cut(s) | 105, 240, 516, 717, 803 |
| CfoI | GCGC | 2 cut(s) | 109, 801 |
| Cfr13I | GGNCC | 7 cut(s) | 205, 298, 322, 523, 535, 627, 640 |
| Cfr42I | CCGCGG | 1 cut(s) | 731 |
| Csp6I | GTAC | 2 cut(s) | 185, 392 |
| CviQI | GTAC | 2 cut(s) | 185, 392 |
| DdeI | CTNAG | 7 cut(s) | 2, 30, 426, 432, 471, 519, 552 |
| DpnI | GATC | 6 cut(s) | 41, 153, 198, 230, 479, 608 |
| DpnII | GATC | 6 cut(s) | 39, 151, 196, 228, 477, 606 |
| Eam1104I | CTCTTC | 1 cut(s) | 370 |
| EarI | CTCTTC | 1 cut(s) | 370 |
| Eco130I | CCWWGG | 1 cut(s) | 806 |
| Eco24I | GRGCYC | 2 cut(s) | 363, 748 |
| Eco47I | GGWCC | 4 cut(s) | 205, 298, 627, 640 |
| Eco57I | CTGAAG | 1 cut(s) | 276 |
| Eco81I | CCTNAGG | 1 cut(s) | 30 |
| Eco88I | CYCGRG | 1 cut(s) | 356 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 59, 367 |
| EcoO109I | RGGNCCY | 3 cut(s) | 322, 535, 640 |
| EcoRII | CCWGG | 4 cut(s) | 231, 368, 409, 772 |
| EcoT14I | CCWWGG | 1 cut(s) | 806 |
| EcoT38I | GRGCYC | 2 cut(s) | 363, 748 |
| ErhI | CCWWGG | 1 cut(s) | 806 |
| FaiI | YATR | 5 cut(s) | 224, 249, 308, 448, 450 |
| FaqI | GGGAC | 2 cut(s) | 284, 653 |
| FblI | GTMKAC | 1 cut(s) | 734 |
| Fnu4HI | GCNGC | 6 cut(s) | 26, 45, 138, 177, 333, 713 |
| FokI | GGATG | 1 cut(s) | 808 |
| FriOI | GRGCYC | 2 cut(s) | 363, 748 |
| Fsp4HI | GCNGC | 6 cut(s) | 26, 45, 138, 177, 333, 713 |
| FspBI | CTAG | 2 cut(s) | 134, 841 |
| GlaI | GCGC | 2 cut(s) | 108, 800 |
| GluI | GCNGC | 6 cut(s) | 26, 45, 138, 177, 333, 713 |
| GsuI | CTGGAG | 2 cut(s) | 393, 795 |
| HaeIII | GGCC | 5 cut(s) | 323, 524, 537, 701, 712 |
| HapII | CCGG | 4 cut(s) | 284, 637, 741, 826 |
| HhaI | GCGC | 2 cut(s) | 109, 801 |
| Hin6I | GCGC | 2 cut(s) | 107, 799 |
| HinP1I | GCGC | 2 cut(s) | 107, 799 |
| HinfI | GANTC | 6 cut(s) | 20, 145, 274, 287, 616, 794 |
| HpaII | CCGG | 4 cut(s) | 284, 637, 741, 826 |
| HphI | GGTGA | 3 cut(s) | 238, 430, 587 |
| Hpy166II | GTNNAC | 2 cut(s) | 438, 735 |
| Hpy188I | TCNGA | 4 cut(s) | 19, 292, 596, 627 |
| Hpy188III | TCNNGA | 7 cut(s) | 83, 98, 149, 278, 317, 470, 563 |
| Hpy8I | GTNNAC | 2 cut(s) | 438, 735 |
| HpyAV | CCTTC | 5 cut(s) | 24, 260, 476, 683, 691 |
| HpyCH4V | TGCA | 4 cut(s) | 47, 124, 542, 646 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 113, 176, 200, 329, 338, 515 |
| HpyF3I | CTNAG | 7 cut(s) | 2, 30, 426, 432, 471, 519, 552 |
| HspAI | GCGC | 2 cut(s) | 107, 799 |
| KpnI | GGTACC | 1 cut(s) | 188 |
| KspI | CCGCGG | 1 cut(s) | 731 |
| Kzo9I | GATC | 6 cut(s) | 39, 151, 196, 228, 477, 606 |
| LmnI | GCTCC | 4 cut(s) | 235, 269, 352, 676 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 163, 319 |
| LweI | GCATC | 2 cut(s) | 328, 334 |
| MaeI | CTAG | 2 cut(s) | 134, 841 |
| MaeIII | GTNAC | 2 cut(s) | 400, 456 |
| MalI | GATC | 6 cut(s) | 41, 153, 198, 230, 479, 608 |
| MbiI | CCGCTC | 1 cut(s) | 475 |
| MboI | GATC | 6 cut(s) | 39, 151, 196, 228, 477, 606 |
| MboII | GAAGA | 3 cut(s) | 357, 614, 716 |
| MfeI | CAATTG | 1 cut(s) | 653 |
| MhlI | GDGCHC | 2 cut(s) | 363, 748 |
| MluCI | AATT | 1 cut(s) | 653 |
| MlyI | GAGTC | 2 cut(s) | 14, 803 |
| MmeI | TCCRAC | 1 cut(s) | 354 |
| MseI | TTAA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 3 cut(s) | 176, 203, 730 |
| MspI | CCGG | 4 cut(s) | 284, 637, 741, 826 |
| MspR9I | CCNGG | 7 cut(s) | 233, 370, 411, 638, 742, 774, 826 |
| MunI | CAATTG | 1 cut(s) | 653 |
| MvaI | CCWGG | 4 cut(s) | 233, 370, 411, 774 |
| MvnI | CGCG | 4 cut(s) | 497, 672, 730, 799 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 113, 176, 200, 329, 338, 515 |
| NciI | CCSGG | 3 cut(s) | 638, 742, 826 |
| NdeII | GATC | 6 cut(s) | 39, 151, 196, 228, 477, 606 |
| NlaIV | GGNNCC | 9 cut(s) | 36, 186, 207, 237, 300, 324, 536, 629, 641 |
| NmuCI | GTSAC | 1 cut(s) | 400 |
| PfeI | GAWTC | 4 cut(s) | 145, 274, 287, 616 |
| PfoI | TCCNGGA | 4 cut(s) | 231, 409, 636, 824 |
| PkrI | GCNGC | 6 cut(s) | 27, 46, 139, 178, 334, 714 |
| Ple19I | CGATCG | 1 cut(s) | 42 |
| PleI | GAGTC | 2 cut(s) | 14, 802 |
| PpsI | GAGTC | 2 cut(s) | 14, 802 |
| PpuMI | RGGWCCY | 1 cut(s) | 640 |
| Psp5II | RGGWCCY | 1 cut(s) | 640 |
| Psp6I | CCWGG | 4 cut(s) | 231, 368, 409, 772 |
| PspGI | CCWGG | 4 cut(s) | 231, 368, 409, 772 |
| PspN4I | GGNNCC | 9 cut(s) | 36, 186, 207, 237, 300, 324, 536, 629, 641 |
| PspPI | GGNCC | 7 cut(s) | 205, 298, 322, 523, 535, 627, 640 |
| PspPPI | RGGWCCY | 1 cut(s) | 640 |
| PvuI | CGATCG | 1 cut(s) | 42 |
| RsaI | GTAC | 2 cut(s) | 186, 393 |
| RsaNI | GTAC | 2 cut(s) | 185, 392 |
| SacII | CCGCGG | 1 cut(s) | 731 |
| SaqAI | TTAA | 1 cut(s) | 72 |
| SatI | GCNGC | 6 cut(s) | 26, 45, 138, 177, 333, 713 |
| Sau3AI | GATC | 6 cut(s) | 39, 151, 196, 228, 477, 606 |
| Sau96I | GGNCC | 7 cut(s) | 205, 298, 322, 523, 535, 627, 640 |
| SchI | GAGTC | 2 cut(s) | 14, 803 |
| ScrFI | CCNGG | 7 cut(s) | 233, 370, 411, 638, 742, 774, 826 |
| SduI | GDGCHC | 2 cut(s) | 363, 748 |
| SfaNI | GCATC | 2 cut(s) | 328, 334 |
| Sfr303I | CCGCGG | 1 cut(s) | 731 |
| SgrBI | CCGCGG | 1 cut(s) | 731 |
| SinI | GGWCC | 4 cut(s) | 205, 298, 627, 640 |
| SmlI | CTYRAG | 1 cut(s) | 96 |
| SmoI | CTYRAG | 1 cut(s) | 96 |
| Sse9I | AATT | 1 cut(s) | 653 |
| SspMI | CTAG | 2 cut(s) | 134, 841 |
| StyD4I | CCNGG | 7 cut(s) | 231, 368, 409, 636, 740, 772, 824 |
| StyI | CCWWGG | 1 cut(s) | 806 |
| TaqI | TCGA | 2 cut(s) | 396, 748 |
| TasI | AATT | 1 cut(s) | 653 |
| TauI | GCSGC | 3 cut(s) | 28, 140, 715 |
| TfiI | GAWTC | 4 cut(s) | 145, 274, 287, 616 |
| Tru1I | TTAA | 1 cut(s) | 72 |
| Tru9I | TTAA | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 400 |
| TseI | GCWGC | 3 cut(s) | 44, 176, 332 |
| Tsp45I | GTSAC | 1 cut(s) | 400 |
| TspDTI | ATGAA | 2 cut(s) | 102, 498 |
| VpaK11BI | GGWCC | 4 cut(s) | 205, 298, 627, 640 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 59, 367 |
| XmiI | GTMKAC | 1 cut(s) | 734 |
| XspI | CTAG | 2 cut(s) | 134, 841 |