Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1084 |
| Acc36I | ACCTGC | 1 cut(s) | 575 |
| AccB1I | GGYRCC | 1 cut(s) | 473 |
| AccII | CGCG | 6 cut(s) | 546, 553, 559, 627, 643, 1147 |
| AclWI | GGATC | 2 cut(s) | 1111, 1124 |
| AcoI | YGGCCR | 3 cut(s) | 113, 778, 997 |
| AcsI | RAATTY | 1 cut(s) | 93 |
| AcyI | GRCGYC | 1 cut(s) | 474 |
| AfaI | GTAC | 2 cut(s) | 964, 1026 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 16, 205, 270, 271, 360, 498, 629, 758, 1028 |
| AgeI | ACCGGT | 1 cut(s) | 1021 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1113, 1145 |
| AluBI | AGCT | 2 cut(s) | 468, 569 |
| AluI | AGCT | 2 cut(s) | 468, 569 |
| Alw21I | GWGCWC | 2 cut(s) | 292, 882 |
| Alw26I | GTCTC | 3 cut(s) | 153, 1016, 1070 |
| AlwI | GGATC | 2 cut(s) | 1111, 1124 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 468 |
| Ama87I | CYCGRG | 1 cut(s) | 1013 |
| AoxI | GGCC | 8 cut(s) | 113, 387, 409, 778, 813, 984, 997, 1090 |
| ApeKI | GCWGC | 3 cut(s) | 581, 650, 828 |
| ApoI | RAATTY | 1 cut(s) | 93 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 683, 715 |
| AseI | ATTAAT | 1 cut(s) | 32 |
| AsiGI | ACCGGT | 1 cut(s) | 1021 |
| AspLEI | GCGC | 3 cut(s) | 370, 476, 559 |
| AspS9I | GGNCC | 6 cut(s) | 436, 447, 814, 969, 985, 1091 |
| AsuC2I | CCSGG | 1 cut(s) | 875 |
| AsuHPI | GGTGA | 2 cut(s) | 391, 709 |
| AsuII | TTCGAA | 1 cut(s) | 442 |
| AsuNHI | GCTAGC | 1 cut(s) | 364 |
| AvaI | CYCGRG | 1 cut(s) | 1013 |
| AvaII | GGWCC | 3 cut(s) | 436, 447, 969 |
| BaeGI | GKGCMC | 1 cut(s) | 493 |
| BalI | TGGCCA | 1 cut(s) | 780 |
| BamHI | GGATCC | 1 cut(s) | 1116 |
| BanI | GGYRCC | 1 cut(s) | 473 |
| BanII | GRGCYC | 1 cut(s) | 1036 |
| Bbv12I | GWGCWC | 2 cut(s) | 292, 882 |
| BbvI | GCAGC | 3 cut(s) | 593, 637, 840 |
| BccI | CCATC | 8 cut(s) | 324, 492, 524, 608, 746, 752, 761, 849 |
| BceAI | ACGGC | 3 cut(s) | 128, 999, 1012 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 242, 276 |
| BcnI | CCSGG | 1 cut(s) | 875 |
| BcoDI | GTCTC | 3 cut(s) | 153, 1016, 1070 |
| BfaI | CTAG | 4 cut(s) | 365, 566, 977, 1080 |
| BfoI | RGCGCY | 2 cut(s) | 371, 477 |
| BfuAI | ACCTGC | 1 cut(s) | 575 |
| BglII | AGATCT | 1 cut(s) | 562 |
| BisI | GCNGC | 8 cut(s) | 116, 582, 628, 631, 644, 651, 829, 1000 |
| BlsI | GCNGC | 8 cut(s) | 117, 583, 629, 632, 645, 652, 830, 1001 |
| Bme1390I | CCNGG | 1 cut(s) | 875 |
| Bme18I | GGWCC | 3 cut(s) | 436, 447, 969 |
| BmeT110I | CYCGRG | 1 cut(s) | 1013 |
| BmgT120I | GGNCC | 6 cut(s) | 436, 447, 814, 969, 985, 1091 |
| BmiI | GGNNCC | 9 cut(s) | 210, 277, 449, 475, 844, 971, 1033, 1093, 1118 |
| BmrFI | CCNGG | 1 cut(s) | 875 |
| BmrI | ACTGGG | 2 cut(s) | 368, 1037 |
| BmsI | GCATC | 2 cut(s) | 53, 367 |
| BmtI | GCTAGC | 1 cut(s) | 368 |
| BmuI | ACTGGG | 2 cut(s) | 368, 1037 |
| BpmI | CTGGAG | 2 cut(s) | 128, 929 |
| Bpu14I | TTCGAA | 1 cut(s) | 442 |
| BpuMI | CCSGG | 1 cut(s) | 875 |
| Bsa29I | ATCGAT | 3 cut(s) | 231, 603, 756 |
| BsaHI | GRCGYC | 1 cut(s) | 474 |
| BsaI | GGTCTC | 1 cut(s) | 1016 |
| BsaJI | CCNNGG | 2 cut(s) | 451, 810 |
| BsaWI | WCCGGW | 3 cut(s) | 353, 433, 1021 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 312, 342, 827, 857 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 16, 205, 270, 271, 360, 498, 629, 758, 1028 |
| Bse118I | RCCGGY | 3 cut(s) | 9, 890, 1021 |
| Bse1I | ACTGG | 6 cut(s) | 145, 363, 416, 748, 964, 1032 |
| BseCI | ATCGAT | 3 cut(s) | 231, 603, 756 |
| BseDI | CCNNGG | 2 cut(s) | 451, 810 |
| BseGI | GGATG | 1 cut(s) | 44 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 16, 205, 270, 271, 360, 498, 629, 758, 1028 |
| BseNI | ACTGG | 6 cut(s) | 145, 363, 416, 748, 964, 1032 |
| BseRI | GAGGAG | 1 cut(s) | 290 |
| BseSI | GKGCMC | 1 cut(s) | 493 |
| BseX3I | CGGCCG | 2 cut(s) | 113, 997 |
| BseXI | GCAGC | 3 cut(s) | 593, 637, 840 |
| BseYI | CCCAGC | 1 cut(s) | 468 |
| BsgI | GTGCAG | 1 cut(s) | 922 |
| Bsh1236I | CGCG | 6 cut(s) | 546, 553, 559, 627, 643, 1147 |
| Bsh1285I | CGRYCG | 3 cut(s) | 116, 891, 1000 |
| BshFI | GGCC | 8 cut(s) | 115, 389, 411, 780, 815, 986, 999, 1092 |
| BshNI | GGYRCC | 1 cut(s) | 473 |
| BshTI | ACCGGT | 1 cut(s) | 1021 |
| BshVI | ATCGAT | 3 cut(s) | 231, 603, 756 |
| BsiEI | CGRYCG | 3 cut(s) | 116, 891, 1000 |
| BsiHKAI | GWGCWC | 2 cut(s) | 292, 882 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1013 |
| BsiSI | CCGG | 6 cut(s) | 10, 354, 434, 874, 891, 1022 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 16, 205, 270, 271, 360, 498, 629, 758, 1028 |
| BsmAI | GTCTC | 3 cut(s) | 153, 1016, 1070 |
| BsmI | GAATGC | 1 cut(s) | 294 |
| BsnI | GGCC | 8 cut(s) | 115, 389, 411, 780, 815, 986, 999, 1092 |
| Bso31I | GGTCTC | 1 cut(s) | 1016 |
| BsoBI | CYCGRG | 1 cut(s) | 1013 |
| Bsp119I | TTCGAA | 1 cut(s) | 442 |
| Bsp1286I | GDGCHC | 4 cut(s) | 292, 493, 882, 1036 |
| Bsp143I | GATC | 3 cut(s) | 232, 562, 1116 |
| Bsp19I | CCATGG | 1 cut(s) | 810 |
| Bsp68I | TCGCGA | 1 cut(s) | 546 |
| BspANI | GGCC | 8 cut(s) | 115, 389, 411, 780, 815, 986, 999, 1092 |
| BspDI | ATCGAT | 3 cut(s) | 231, 603, 756 |
| BspFNI | CGCG | 6 cut(s) | 546, 553, 559, 627, 643, 1147 |
| BspLI | GGNNCC | 9 cut(s) | 210, 277, 449, 475, 844, 971, 1033, 1093, 1118 |
| BspMI | ACCTGC | 1 cut(s) | 575 |
| BspOI | GCTAGC | 1 cut(s) | 368 |
| BspPI | GGATC | 2 cut(s) | 1111, 1124 |
| BspT104I | TTCGAA | 1 cut(s) | 442 |
| BspT107I | GGYRCC | 1 cut(s) | 473 |
| BspTNI | GGTCTC | 1 cut(s) | 1016 |
| BsrFI | RCCGGY | 3 cut(s) | 9, 890, 1021 |
| BsrI | ACTGG | 6 cut(s) | 145, 363, 416, 748, 964, 1032 |
| BssAI | RCCGGY | 3 cut(s) | 9, 890, 1021 |
| BssECI | CCNNGG | 2 cut(s) | 451, 810 |
| BssMI | GATC | 3 cut(s) | 232, 562, 1116 |
| BssNI | GRCGYC | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 2 cut(s) | 451, 810 |
| Bst4CI | ACNGT | 1 cut(s) | 839 |
| Bst6I | CTCTTC | 2 cut(s) | 237, 949 |
| BstACI | GRCGYC | 1 cut(s) | 474 |
| BstBI | TTCGAA | 1 cut(s) | 442 |
| BstDSI | CCRYGG | 1 cut(s) | 810 |
| BstF5I | GGATG | 1 cut(s) | 44 |
| BstFNI | CGCG | 6 cut(s) | 546, 553, 559, 627, 643, 1147 |
| BstH2I | RGCGCY | 2 cut(s) | 371, 477 |
| BstHHI | GCGC | 3 cut(s) | 370, 476, 559 |
| BstKTI | GATC | 3 cut(s) | 235, 565, 1119 |
| BstMAI | GTCTC | 3 cut(s) | 153, 1016, 1070 |
| BstMBI | GATC | 3 cut(s) | 232, 562, 1116 |
| BstMCI | CGRYCG | 3 cut(s) | 116, 891, 1000 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 386, 636, 772, 1089 |
| BstNSI | RCATGY | 2 cut(s) | 1048, 1087 |
| BstSCI | CCNGG | 1 cut(s) | 873 |
| BstSLI | GKGCMC | 1 cut(s) | 493 |
| BstUI | CGCG | 6 cut(s) | 546, 553, 559, 627, 643, 1147 |
| BstV1I | GCAGC | 3 cut(s) | 593, 637, 840 |
| BstX2I | RGATCY | 2 cut(s) | 562, 1116 |
| BstYI | RGATCY | 2 cut(s) | 562, 1116 |
| BstZI | CGGCCG | 2 cut(s) | 113, 997 |
| Bsu15I | ATCGAT | 3 cut(s) | 231, 603, 756 |
| BsuRI | GGCC | 8 cut(s) | 115, 389, 411, 780, 815, 986, 999, 1092 |
| BsuTUI | ATCGAT | 3 cut(s) | 231, 603, 756 |
| BtgI | CCRYGG | 1 cut(s) | 810 |
| BtsCI | GGATG | 1 cut(s) | 44 |
| BtsI | GCAGTG | 1 cut(s) | 672 |
| BtsIMutI | CAGTG | 3 cut(s) | 672, 741, 844 |
| BtuMI | TCGCGA | 1 cut(s) | 546 |
| BveI | ACCTGC | 1 cut(s) | 575 |
| CaiI | CAGNNNCTG | 1 cut(s) | 468 |
| CfoI | GCGC | 3 cut(s) | 370, 476, 559 |
| Cfr10I | RCCGGY | 3 cut(s) | 9, 890, 1021 |
| Cfr13I | GGNCC | 6 cut(s) | 436, 447, 814, 969, 985, 1091 |
| ClaI | ATCGAT | 3 cut(s) | 231, 603, 756 |
| CseI | GACGC | 1 cut(s) | 401 |
| Csp6I | GTAC | 2 cut(s) | 963, 1025 |
| CspAI | ACCGGT | 1 cut(s) | 1021 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 840, 875 |
| CviAII | CATG | 6 cut(s) | 776, 811, 821, 1045, 1063, 1084 |
| CviQI | GTAC | 2 cut(s) | 963, 1025 |
| DinI | GGCGCC | 1 cut(s) | 475 |
| DpnI | GATC | 3 cut(s) | 234, 564, 1118 |
| DpnII | GATC | 3 cut(s) | 232, 562, 1116 |
| DraI | TTTAAA | 1 cut(s) | 105 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1084 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1084 |
| EaeI | YGGCCR | 3 cut(s) | 113, 778, 997 |
| EagI | CGGCCG | 2 cut(s) | 113, 997 |
| Eam1104I | CTCTTC | 2 cut(s) | 237, 949 |
| EarI | CTCTTC | 2 cut(s) | 237, 949 |
| EciI | GGCGGA | 3 cut(s) | 410, 909, 1130 |
| EclXI | CGGCCG | 2 cut(s) | 113, 997 |
| Eco130I | CCWWGG | 2 cut(s) | 451, 810 |
| Eco24I | GRGCYC | 1 cut(s) | 1036 |
| Eco31I | GGTCTC | 1 cut(s) | 1016 |
| Eco32I | GATATC | 1 cut(s) | 182 |
| Eco47I | GGWCC | 3 cut(s) | 436, 447, 969 |
| Eco52I | CGGCCG | 2 cut(s) | 113, 997 |
| Eco88I | CYCGRG | 1 cut(s) | 1013 |
| EcoO109I | RGGNCCY | 1 cut(s) | 447 |
| EcoRV | GATATC | 1 cut(s) | 182 |
| EcoT14I | CCWWGG | 2 cut(s) | 451, 810 |
| EcoT38I | GRGCYC | 1 cut(s) | 1036 |
| EgeI | GGCGCC | 1 cut(s) | 475 |
| EheI | GGCGCC | 1 cut(s) | 475 |
| ErhI | CCWWGG | 2 cut(s) | 451, 810 |
| FaeI | CATG | 6 cut(s) | 779, 814, 824, 1048, 1066, 1087 |
| FatI | CATG | 6 cut(s) | 775, 810, 820, 1044, 1062, 1083 |
| FauI | CCCGC | 1 cut(s) | 14 |
| Fnu4HI | GCNGC | 8 cut(s) | 116, 582, 628, 631, 644, 651, 829, 1000 |
| FokI | GGATG | 1 cut(s) | 31 |
| FriOI | GRGCYC | 1 cut(s) | 1036 |
| Fsp4HI | GCNGC | 8 cut(s) | 116, 582, 628, 631, 644, 651, 829, 1000 |
| FspBI | CTAG | 4 cut(s) | 365, 566, 977, 1080 |
| GlaI | GCGC | 3 cut(s) | 369, 475, 558 |
| GluI | GCNGC | 8 cut(s) | 116, 582, 628, 631, 644, 651, 829, 1000 |
| GsaI | CCCAGC | 1 cut(s) | 472 |
| GsuI | CTGGAG | 2 cut(s) | 128, 929 |
| HaeII | RGCGCY | 2 cut(s) | 371, 477 |
| HaeIII | GGCC | 8 cut(s) | 115, 389, 411, 780, 815, 986, 999, 1092 |
| HapII | CCGG | 6 cut(s) | 10, 354, 434, 874, 891, 1022 |
| HgaI | GACGC | 1 cut(s) | 401 |
| HhaI | GCGC | 3 cut(s) | 370, 476, 559 |
| Hin1I | GRCGYC | 1 cut(s) | 474 |
| Hin1II | CATG | 6 cut(s) | 779, 814, 824, 1048, 1066, 1087 |
| Hin6I | GCGC | 3 cut(s) | 368, 474, 557 |
| HinP1I | GCGC | 3 cut(s) | 368, 474, 557 |
| HinfI | GANTC | 4 cut(s) | 321, 336, 699, 788 |
| HpaII | CCGG | 6 cut(s) | 10, 354, 434, 874, 891, 1022 |
| HphI | GGTGA | 2 cut(s) | 391, 709 |
| Hpy188I | TCNGA | 3 cut(s) | 135, 179, 343 |
| Hpy188III | TCNNGA | 5 cut(s) | 236, 545, 667, 908, 1114 |
| Hpy99I | CGWCG | 2 cut(s) | 395, 985 |
| HpyAV | CCTTC | 6 cut(s) | 31, 197, 341, 438, 449, 983 |
| HpyCH4III | ACNGT | 1 cut(s) | 839 |
| HpyCH4IV | ACGT | 1 cut(s) | 1005 |
| HpyCH4V | TGCA | 7 cut(s) | 58, 527, 775, 924, 939, 951, 1066 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 386, 636, 772, 1089 |
| HpySE526I | ACGT | 1 cut(s) | 1005 |
| Hsp92I | GRCGYC | 1 cut(s) | 474 |
| Hsp92II | CATG | 6 cut(s) | 779, 814, 824, 1048, 1066, 1087 |
| HspAI | GCGC | 3 cut(s) | 368, 474, 557 |
| KasI | GGCGCC | 1 cut(s) | 473 |
| Kzo9I | GATC | 3 cut(s) | 232, 562, 1116 |
| LmnI | GCTCC | 5 cut(s) | 214, 333, 848, 877, 1031 |
| Lsp1109I | GCAGC | 3 cut(s) | 593, 637, 840 |
| LweI | GCATC | 2 cut(s) | 53, 367 |
| MaeI | CTAG | 4 cut(s) | 365, 566, 977, 1080 |
| MaeII | ACGT | 1 cut(s) | 1005 |
| MaeIII | GTNAC | 1 cut(s) | 126 |
| MalI | GATC | 3 cut(s) | 234, 564, 1118 |
| MboI | GATC | 3 cut(s) | 232, 562, 1116 |
| MboII | GAAGA | 6 cut(s) | 166, 229, 254, 611, 936, 1129 |
| MflI | RGATCY | 2 cut(s) | 562, 1116 |
| MhlI | GDGCHC | 4 cut(s) | 292, 493, 882, 1036 |
| MlsI | TGGCCA | 1 cut(s) | 780 |
| MluCI | AATT | 4 cut(s) | 93, 782, 796, 897 |
| MluNI | TGGCCA | 1 cut(s) | 780 |
| Mly113I | GGCGCC | 1 cut(s) | 474 |
| MlyI | GAGTC | 1 cut(s) | 315 |
| MmeI | TCCRAC | 2 cut(s) | 366, 840 |
| Mox20I | TGGCCA | 1 cut(s) | 780 |
| MscI | TGGCCA | 1 cut(s) | 780 |
| MseI | TTAA | 4 cut(s) | 32, 104, 153, 248 |
| Msp20I | TGGCCA | 1 cut(s) | 780 |
| MspI | CCGG | 6 cut(s) | 10, 354, 434, 874, 891, 1022 |
| MspR9I | CCNGG | 1 cut(s) | 875 |
| Mva1269I | GAATGC | 1 cut(s) | 294 |
| MvnI | CGCG | 6 cut(s) | 546, 553, 559, 627, 643, 1147 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 386, 636, 772, 1089 |
| NarI | GGCGCC | 1 cut(s) | 474 |
| NciI | CCSGG | 1 cut(s) | 875 |
| NcoI | CCATGG | 1 cut(s) | 810 |
| NdeII | GATC | 3 cut(s) | 232, 562, 1116 |
| NheI | GCTAGC | 1 cut(s) | 364 |
| NlaIII | CATG | 6 cut(s) | 779, 814, 824, 1048, 1066, 1087 |
| NlaIV | GGNNCC | 9 cut(s) | 210, 277, 449, 475, 844, 971, 1033, 1093, 1118 |
| NmuCI | GTSAC | 1 cut(s) | 126 |
| NruI | TCGCGA | 1 cut(s) | 546 |
| NspI | RCATGY | 2 cut(s) | 1048, 1087 |
| NspV | TTCGAA | 1 cut(s) | 442 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 550, 1002 |
| PctI | GAATGC | 1 cut(s) | 294 |
| PfeI | GAWTC | 3 cut(s) | 336, 699, 788 |
| PinAI | ACCGGT | 1 cut(s) | 1021 |
| PkrI | GCNGC | 8 cut(s) | 117, 583, 629, 632, 645, 652, 830, 1001 |
| PleI | GAGTC | 1 cut(s) | 315 |
| PluTI | GGCGCC | 1 cut(s) | 477 |
| PpsI | GAGTC | 1 cut(s) | 315 |
| PpuMI | RGGWCCY | 1 cut(s) | 447 |
| PshBI | ATTAAT | 1 cut(s) | 32 |
| Psp5II | RGGWCCY | 1 cut(s) | 447 |
| PspFI | CCCAGC | 1 cut(s) | 468 |
| PspN4I | GGNNCC | 9 cut(s) | 210, 277, 449, 475, 844, 971, 1033, 1093, 1118 |
| PspPI | GGNCC | 6 cut(s) | 436, 447, 814, 969, 985, 1091 |
| PspPPI | RGGWCCY | 1 cut(s) | 447 |
| PstNI | CAGNNNCTG | 1 cut(s) | 468 |
| PsuI | RGATCY | 2 cut(s) | 562, 1116 |
| RruI | TCGCGA | 1 cut(s) | 546 |
| RsaI | GTAC | 2 cut(s) | 964, 1026 |
| RsaNI | GTAC | 2 cut(s) | 963, 1025 |
| SaqAI | TTAA | 4 cut(s) | 32, 104, 153, 248 |
| SatI | GCNGC | 8 cut(s) | 116, 582, 628, 631, 644, 651, 829, 1000 |
| Sau3AI | GATC | 3 cut(s) | 232, 562, 1116 |
| Sau96I | GGNCC | 6 cut(s) | 436, 447, 814, 969, 985, 1091 |
| SchI | GAGTC | 1 cut(s) | 315 |
| ScrFI | CCNGG | 1 cut(s) | 875 |
| SduI | GDGCHC | 4 cut(s) | 292, 493, 882, 1036 |
| SfaNI | GCATC | 2 cut(s) | 53, 367 |
| SfoI | GGCGCC | 1 cut(s) | 475 |
| SfuI | TTCGAA | 1 cut(s) | 442 |
| SinI | GGWCC | 3 cut(s) | 436, 447, 969 |
| Sse9I | AATT | 4 cut(s) | 93, 782, 796, 897 |
| SspDI | GGCGCC | 1 cut(s) | 473 |
| SspMI | CTAG | 4 cut(s) | 365, 566, 977, 1080 |
| StyD4I | CCNGG | 1 cut(s) | 873 |
| StyI | CCWWGG | 2 cut(s) | 451, 810 |
| TaaI | ACNGT | 1 cut(s) | 839 |
| TaiI | ACGT | 1 cut(s) | 1008 |
| TaqI | TCGA | 7 cut(s) | 231, 319, 334, 442, 603, 756, 806 |
| TaqII | GACCGA | 1 cut(s) | 692 |
| TasI | AATT | 4 cut(s) | 93, 782, 796, 897 |
| TauI | GCSGC | 5 cut(s) | 118, 630, 633, 646, 1002 |
| TfiI | GAWTC | 3 cut(s) | 336, 699, 788 |
| Tru1I | TTAA | 4 cut(s) | 32, 104, 153, 248 |
| Tru9I | TTAA | 4 cut(s) | 32, 104, 153, 248 |
| TscAI | CASTG | 3 cut(s) | 679, 748, 844 |
| TseFI | GTSAC | 1 cut(s) | 126 |
| TseI | GCWGC | 3 cut(s) | 581, 650, 828 |
| Tsp45I | GTSAC | 1 cut(s) | 126 |
| TspDTI | ATGAA | 3 cut(s) | 41, 50, 919 |
| TspRI | CASTG | 3 cut(s) | 679, 748, 844 |
| VpaK11BI | GGWCC | 3 cut(s) | 436, 447, 969 |
| VspI | ATTAAT | 1 cut(s) | 32 |
| XapI | RAATTY | 1 cut(s) | 93 |
| XceI | RCATGY | 2 cut(s) | 1048, 1087 |
| XspI | CTAG | 4 cut(s) | 365, 566, 977, 1080 |