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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 3 cut(s) | 19, 61, 117 |
| AciI | CCGC | 9 cut(s) | 4, 19, 82, 86, 90, 96, 115, 117, 361 |
| AclWI | GGATC | 1 cut(s) | 191 |
| AcoI | YGGCCR | 3 cut(s) | 87, 97, 358 |
| AfaI | GTAC | 1 cut(s) | 349 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 49, 127, 140, 164 |
| AgsI | TTSAA | 1 cut(s) | 299 |
| AlwI | GGATC | 1 cut(s) | 191 |
| AoxI | GGCC | 5 cut(s) | 87, 97, 118, 310, 358 |
| AspLEI | GCGC | 1 cut(s) | 10 |
| AspS9I | GGNCC | 1 cut(s) | 131 |
| AsuC2I | CCSGG | 2 cut(s) | 129, 159 |
| AvaII | GGWCC | 1 cut(s) | 131 |
| BauI | CACGAG | 1 cut(s) | 219 |
| BccI | CCATC | 1 cut(s) | 66 |
| BcnI | CCSGG | 2 cut(s) | 129, 159 |
| BfmI | CTRYAG | 1 cut(s) | 213 |
| BfoI | RGCGCY | 1 cut(s) | 11 |
| BglII | AGATCT | 1 cut(s) | 275 |
| BisI | GCNGC | 6 cut(s) | 20, 87, 90, 97, 118, 361 |
| BlsI | GCNGC | 6 cut(s) | 21, 88, 91, 98, 119, 362 |
| Bme1390I | CCNGG | 2 cut(s) | 129, 159 |
| Bme18I | GGWCC | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 1 cut(s) | 131 |
| BmiI | GGNNCC | 1 cut(s) | 132 |
| BmrFI | CCNGG | 2 cut(s) | 129, 159 |
| BpuMI | CCSGG | 2 cut(s) | 129, 159 |
| BsaJI | CCNNGG | 3 cut(s) | 48, 115, 157 |
| BsaWI | WCCGGW | 1 cut(s) | 140 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 225, 255 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 49, 127, 140, 164 |
| Bse1I | ACTGG | 1 cut(s) | 27 |
| BseDI | CCNNGG | 3 cut(s) | 48, 115, 157 |
| BseGI | GGATG | 2 cut(s) | 201, 334 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 49, 127, 140, 164 |
| BseNI | ACTGG | 1 cut(s) | 27 |
| BseRI | GAGGAG | 1 cut(s) | 37 |
| BseX3I | CGGCCG | 2 cut(s) | 87, 97 |
| Bsh1236I | CGCG | 3 cut(s) | 19, 61, 117 |
| Bsh1285I | CGRYCG | 2 cut(s) | 90, 100 |
| BshFI | GGCC | 5 cut(s) | 89, 99, 120, 312, 360 |
| BsiEI | CGRYCG | 2 cut(s) | 90, 100 |
| BsiSI | CCGG | 3 cut(s) | 128, 141, 159 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 49, 127, 140, 164 |
| BsnI | GGCC | 5 cut(s) | 89, 99, 120, 312, 360 |
| Bsp143I | GATC | 2 cut(s) | 183, 275 |
| BspACI | CCGC | 9 cut(s) | 4, 19, 82, 86, 90, 96, 115, 117, 361 |
| BspANI | GGCC | 5 cut(s) | 89, 99, 120, 312, 360 |
| BspFNI | CGCG | 3 cut(s) | 19, 61, 117 |
| BspLI | GGNNCC | 1 cut(s) | 132 |
| BspPI | GGATC | 1 cut(s) | 191 |
| BspQI | GCTCTTC | 1 cut(s) | 157 |
| BsrI | ACTGG | 1 cut(s) | 27 |
| BssECI | CCNNGG | 3 cut(s) | 48, 115, 157 |
| BssMI | GATC | 2 cut(s) | 183, 275 |
| BssSI | CACGAG | 1 cut(s) | 219 |
| Bst2BI | CACGAG | 1 cut(s) | 219 |
| Bst4CI | ACNGT | 3 cut(s) | 105, 214, 337 |
| Bst6I | CTCTTC | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 84, 94 |
| BstDEI | CTNAG | 1 cut(s) | 269 |
| BstDSI | CCRYGG | 1 cut(s) | 115 |
| BstF5I | GGATG | 2 cut(s) | 201, 334 |
| BstFNI | CGCG | 3 cut(s) | 19, 61, 117 |
| BstH2I | RGCGCY | 1 cut(s) | 11 |
| BstHHI | GCGC | 1 cut(s) | 10 |
| BstKTI | GATC | 2 cut(s) | 186, 278 |
| BstMBI | GATC | 2 cut(s) | 183, 275 |
| BstMCI | CGRYCG | 2 cut(s) | 90, 100 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 16 |
| BstSCI | CCNGG | 2 cut(s) | 127, 157 |
| BstSFI | CTRYAG | 1 cut(s) | 213 |
| BstUI | CGCG | 3 cut(s) | 19, 61, 117 |
| BstX2I | RGATCY | 1 cut(s) | 275 |
| BstYI | RGATCY | 1 cut(s) | 275 |
| BstZI | CGGCCG | 2 cut(s) | 87, 97 |
| BsuRI | GGCC | 5 cut(s) | 89, 99, 120, 312, 360 |
| BtgI | CCRYGG | 1 cut(s) | 115 |
| BtsCI | GGATG | 2 cut(s) | 201, 334 |
| BtsI | GCAGTG | 1 cut(s) | 178 |
| BtsIMutI | CAGTG | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 84, 94 |
| CciNI | GCGGCCGC | 1 cut(s) | 87 |
| CfoI | GCGC | 1 cut(s) | 10 |
| Cfr13I | GGNCC | 1 cut(s) | 131 |
| Cfr42I | CCGCGG | 1 cut(s) | 118 |
| Csp6I | GTAC | 1 cut(s) | 348 |
| CviJI | RGCY | 8 cut(s) | 89, 99, 120, 238, 302, 312, 360, 368 |
| CviKI_1 | RGCY | 8 cut(s) | 89, 99, 120, 238, 302, 312, 360, 368 |
| CviQI | GTAC | 1 cut(s) | 348 |
| DdeI | CTNAG | 1 cut(s) | 269 |
| DpnI | GATC | 2 cut(s) | 185, 277 |
| DpnII | GATC | 2 cut(s) | 183, 275 |
| EaeI | YGGCCR | 3 cut(s) | 87, 97, 358 |
| EagI | CGGCCG | 2 cut(s) | 87, 97 |
| Eam1104I | CTCTTC | 1 cut(s) | 157 |
| EarI | CTCTTC | 1 cut(s) | 157 |
| EclXI | CGGCCG | 2 cut(s) | 87, 97 |
| Eco47I | GGWCC | 1 cut(s) | 131 |
| Eco52I | CGGCCG | 2 cut(s) | 87, 97 |
| FaiI | YATR | 4 cut(s) | 230, 318, 320, 376 |
| FauI | CCCGC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 6 cut(s) | 20, 87, 90, 97, 118, 361 |
| FokI | GGATG | 2 cut(s) | 208, 341 |
| Fsp4HI | GCNGC | 6 cut(s) | 20, 87, 90, 97, 118, 361 |
| GlaI | GCGC | 1 cut(s) | 9 |
| GluI | GCNGC | 6 cut(s) | 20, 87, 90, 97, 118, 361 |
| HaeII | RGCGCY | 1 cut(s) | 11 |
| HaeIII | GGCC | 5 cut(s) | 89, 99, 120, 312, 360 |
| HapII | CCGG | 3 cut(s) | 128, 141, 159 |
| HhaI | GCGC | 1 cut(s) | 10 |
| Hin6I | GCGC | 1 cut(s) | 8 |
| HinP1I | GCGC | 1 cut(s) | 8 |
| HinfI | GANTC | 2 cut(s) | 38, 178 |
| HpaII | CCGG | 3 cut(s) | 128, 141, 159 |
| Hpy188I | TCNGA | 4 cut(s) | 52, 135, 183, 260 |
| Hpy188III | TCNNGA | 2 cut(s) | 286, 340 |
| Hpy99I | CGWCG | 1 cut(s) | 249 |
| HpyCH4III | ACNGT | 3 cut(s) | 105, 214, 337 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 1 cut(s) | 269 |
| HspAI | GCGC | 1 cut(s) | 8 |
| KspI | CCGCGG | 1 cut(s) | 118 |
| Kzo9I | GATC | 2 cut(s) | 183, 275 |
| LguI | GCTCTTC | 1 cut(s) | 157 |
| LmnI | GCTCC | 2 cut(s) | 15, 65 |
| LpnPI | CCDG | 4 cut(s) | 40, 141, 154, 172 |
| MaeIII | GTNAC | 1 cut(s) | 331 |
| MalI | GATC | 2 cut(s) | 185, 277 |
| MboI | GATC | 2 cut(s) | 183, 275 |
| MboII | GAAGA | 4 cut(s) | 100, 103, 144, 285 |
| MflI | RGATCY | 1 cut(s) | 275 |
| MluCI | AATT | 1 cut(s) | 321 |
| MlyI | GAGTC | 1 cut(s) | 172 |
| MmeI | TCCRAC | 1 cut(s) | 158 |
| MnlI | CCTC | 8 cut(s) | 28, 53, 58, 71, 135, 155, 185, 251 |
| MspA1I | CMGCKG | 1 cut(s) | 117 |
| MspI | CCGG | 3 cut(s) | 128, 141, 159 |
| MspR9I | CCNGG | 2 cut(s) | 129, 159 |
| MvnI | CGCG | 3 cut(s) | 19, 61, 117 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 16 |
| NciI | CCSGG | 2 cut(s) | 129, 159 |
| NdeII | GATC | 2 cut(s) | 183, 275 |
| NlaIV | GGNNCC | 1 cut(s) | 132 |
| NotI | GCGGCCGC | 1 cut(s) | 87 |
| PciSI | GCTCTTC | 1 cut(s) | 157 |
| PfeI | GAWTC | 1 cut(s) | 38 |
| PkrI | GCNGC | 6 cut(s) | 21, 88, 91, 98, 119, 362 |
| PleI | GAGTC | 1 cut(s) | 172 |
| PpsI | GAGTC | 1 cut(s) | 172 |
| PspN4I | GGNNCC | 1 cut(s) | 132 |
| PspPI | GGNCC | 1 cut(s) | 131 |
| PsuI | RGATCY | 1 cut(s) | 275 |
| RsaI | GTAC | 1 cut(s) | 349 |
| RsaNI | GTAC | 1 cut(s) | 348 |
| SacII | CCGCGG | 1 cut(s) | 118 |
| SapI | GCTCTTC | 1 cut(s) | 157 |
| SatI | GCNGC | 6 cut(s) | 20, 87, 90, 97, 118, 361 |
| Sau3AI | GATC | 2 cut(s) | 183, 275 |
| Sau96I | GGNCC | 1 cut(s) | 131 |
| SchI | GAGTC | 1 cut(s) | 172 |
| ScrFI | CCNGG | 2 cut(s) | 129, 159 |
| SetI | ASST | 3 cut(s) | 127, 166, 308 |
| SfcI | CTRYAG | 1 cut(s) | 213 |
| Sfr303I | CCGCGG | 1 cut(s) | 118 |
| SgrBI | CCGCGG | 1 cut(s) | 118 |
| SinI | GGWCC | 1 cut(s) | 131 |
| Sse9I | AATT | 1 cut(s) | 321 |
| SsiI | CCGC | 9 cut(s) | 4, 19, 82, 86, 90, 96, 115, 117, 361 |
| StyD4I | CCNGG | 2 cut(s) | 127, 157 |
| TaaI | ACNGT | 3 cut(s) | 105, 214, 337 |
| TasI | AATT | 1 cut(s) | 321 |
| TatI | WGTACW | 1 cut(s) | 347 |
| TauI | GCSGC | 6 cut(s) | 22, 89, 92, 99, 120, 363 |
| TfiI | GAWTC | 1 cut(s) | 38 |
| TscAI | CASTG | 1 cut(s) | 178 |
| TspGWI | ACGGA | 1 cut(s) | 233 |
| TspRI | CASTG | 1 cut(s) | 178 |
| VpaK11BI | GGWCC | 1 cut(s) | 131 |