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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 983 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 22, 669 |
| Acc65I | GGTACC | 1 cut(s) | 859 |
| AccB1I | GGYRCC | 2 cut(s) | 223, 859 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 121, 500, 533 |
| AccBSI | CCGCTC | 3 cut(s) | 612, 1234, 1255 |
| AccI | GTMKAC | 1 cut(s) | 1863 |
| AccIII | TCCGGA | 1 cut(s) | 1404 |
| AclWI | GGATC | 6 cut(s) | 47, 49, 62, 457, 866, 898 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcuI | CTGAAG | 3 cut(s) | 951, 1409, 1545 |
| AcyI | GRCGYC | 2 cut(s) | 243, 1569 |
| AfaI | GTAC | 5 cut(s) | 151, 239, 861, 1065, 1672 |
| AgsI | TTSAA | 5 cut(s) | 1605, 1615, 1636, 1667, 1677 |
| AjnI | CCWGG | 7 cut(s) | 245, 823, 1015, 1144, 1289, 1715, 1901 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 51, 83 |
| AluBI | AGCT | 9 cut(s) | 252, 446, 692, 770, 1163, 1298, 1523, 1529, 1559 |
| AluI | AGCT | 9 cut(s) | 252, 446, 692, 770, 1163, 1298, 1523, 1529, 1559 |
| Alw26I | GTCTC | 5 cut(s) | 8, 406, 1515, 1725, 1789 |
| AlwI | GGATC | 6 cut(s) | 47, 49, 62, 457, 866, 898 |
| Ama87I | CYCGRG | 1 cut(s) | 429 |
| Aor13HI | TCCGGA | 1 cut(s) | 1404 |
| ApaI | GGGCCC | 2 cut(s) | 282, 1877 |
| AseI | ATTAAT | 1 cut(s) | 1260 |
| Asp718I | GGTACC | 1 cut(s) | 859 |
| AspLEI | GCGC | 4 cut(s) | 319, 606, 748, 1151 |
| AsuC2I | CCSGG | 3 cut(s) | 289, 1453, 1871 |
| AsuHPI | GGTGA | 7 cut(s) | 571, 728, 902, 913, 958, 1210, 1456 |
| AsuII | TTCGAA | 1 cut(s) | 1500 |
| AvaI | CYCGRG | 1 cut(s) | 429 |
| AvaII | GGWCC | 6 cut(s) | 616, 678, 827, 973, 1019, 1407 |
| BaeGI | GKGCMC | 2 cut(s) | 282, 1877 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BanI | GGYRCC | 2 cut(s) | 223, 859 |
| BanII | GRGCYC | 6 cut(s) | 282, 343, 436, 573, 1130, 1877 |
| BauI | CACGAG | 1 cut(s) | 800 |
| BbsI | GAAGAC | 2 cut(s) | 560, 900 |
| BbvCI | CCTCAGC | 2 cut(s) | 834, 1164 |
| BccI | CCATC | 5 cut(s) | 1100, 1171, 1208, 1652, 1692 |
| BceAI | ACGGC | 1 cut(s) | 768 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 563, 597, 1722, 1756 |
| BciT130I | CCWGG | 7 cut(s) | 247, 825, 1017, 1146, 1291, 1717, 1903 |
| BciVI | GTATCC | 1 cut(s) | 371 |
| BcnI | CCSGG | 3 cut(s) | 289, 1453, 1871 |
| BcoDI | GTCTC | 5 cut(s) | 8, 406, 1515, 1725, 1789 |
| BfaI | CTAG | 7 cut(s) | 18, 27, 809, 1490, 1520, 1628, 1884 |
| BfuI | GTATCC | 1 cut(s) | 371 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 207 |
| BmcAI | AGTACT | 1 cut(s) | 1672 |
| Bme18I | GGWCC | 6 cut(s) | 616, 678, 827, 973, 1019, 1407 |
| BmeT110I | CYCGRG | 1 cut(s) | 429 |
| BmrI | ACTGGG | 2 cut(s) | 346, 1426 |
| BmsI | GCATC | 1 cut(s) | 343 |
| BmuI | ACTGGG | 2 cut(s) | 346, 1426 |
| BpiI | GAAGAC | 2 cut(s) | 560, 900 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 386, 418, 1769, 1801 |
| BpmI | CTGGAG | 2 cut(s) | 268, 462 |
| Bpu10I | CCTNAGC | 7 cut(s) | 342, 447, 834, 1029, 1164, 1251, 1299 |
| Bpu14I | TTCGAA | 1 cut(s) | 1500 |
| BpuEI | CTTGAG | 4 cut(s) | 756, 975, 1372, 1694 |
| BpuMI | CCSGG | 3 cut(s) | 289, 1453, 1871 |
| BsaBI | GATNNNNATC | 1 cut(s) | 791 |
| BsaHI | GRCGYC | 2 cut(s) | 243, 1569 |
| BsaI | GGTCTC | 2 cut(s) | 406, 1725 |
| BsaJI | CCNNGG | 6 cut(s) | 357, 632, 750, 1857, 1870, 1901 |
| BsaWI | WCCGGW | 1 cut(s) | 1404 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 930, 960 |
| Bse118I | RCCGGY | 4 cut(s) | 106, 298, 424, 675 |
| Bse1I | ACTGG | 5 cut(s) | 341, 669, 884, 1050, 1432 |
| Bse8I | GATNNNNATC | 1 cut(s) | 791 |
| BseAI | TCCGGA | 1 cut(s) | 1404 |
| BseBI | CCWGG | 7 cut(s) | 247, 825, 1017, 1146, 1291, 1717, 1903 |
| BseDI | CCNNGG | 6 cut(s) | 357, 632, 750, 1857, 1870, 1901 |
| BseGI | GGATG | 4 cut(s) | 154, 373, 649, 1111 |
| BseJI | GATNNNNATC | 1 cut(s) | 791 |
| BseNI | ACTGG | 5 cut(s) | 341, 669, 884, 1050, 1432 |
| BseRI | GAGGAG | 3 cut(s) | 410, 1777, 1790 |
| BseSI | GKGCMC | 2 cut(s) | 282, 1877 |
| BseX3I | CGGCCG | 1 cut(s) | 108 |
| BseYI | CCCAGC | 1 cut(s) | 692 |
| BsgI | GTGCAG | 3 cut(s) | 765, 782, 1266 |
| Bsh1285I | CGRYCG | 1 cut(s) | 111 |
| BshNI | GGYRCC | 2 cut(s) | 223, 859 |
| BsiEI | CGRYCG | 1 cut(s) | 111 |
| BsiHKCI | CYCGRG | 1 cut(s) | 429 |
| BsiSI | CCGG | 8 cut(s) | 107, 288, 299, 425, 676, 1405, 1453, 1870 |
| BslFI | GGGAC | 3 cut(s) | 736, 959, 1370 |
| BsmAI | GTCTC | 5 cut(s) | 8, 406, 1515, 1725, 1789 |
| BsmBI | CGTCTC | 1 cut(s) | 1789 |
| BsmFI | GGGAC | 3 cut(s) | 736, 959, 1370 |
| BsmI | GAATGC | 1 cut(s) | 1631 |
| Bso31I | GGTCTC | 2 cut(s) | 406, 1725 |
| BsoBI | CYCGRG | 1 cut(s) | 429 |
| Bsp119I | TTCGAA | 1 cut(s) | 1500 |
| Bsp120I | GGGCCC | 2 cut(s) | 278, 1873 |
| Bsp1286I | GDGCHC | 6 cut(s) | 282, 343, 436, 573, 1130, 1877 |
| Bsp13I | TCCGGA | 1 cut(s) | 1404 |
| Bsp143I | GATC | 8 cut(s) | 39, 54, 325, 462, 561, 658, 871, 903 |
| Bsp19I | CCATGG | 2 cut(s) | 357, 632 |
| Bsp68I | TCGCGA | 1 cut(s) | 1533 |
| BspEI | TCCGGA | 1 cut(s) | 1404 |
| BspPI | GGATC | 6 cut(s) | 47, 49, 62, 457, 866, 898 |
| BspT104I | TTCGAA | 1 cut(s) | 1500 |
| BspT107I | GGYRCC | 2 cut(s) | 223, 859 |
| BspTNI | GGTCTC | 2 cut(s) | 406, 1725 |
| BsrBI | CCGCTC | 3 cut(s) | 612, 1234, 1255 |
| BsrFI | RCCGGY | 4 cut(s) | 106, 298, 424, 675 |
| BsrI | ACTGG | 5 cut(s) | 341, 669, 884, 1050, 1432 |
| BssAI | RCCGGY | 4 cut(s) | 106, 298, 424, 675 |
| BssECI | CCNNGG | 6 cut(s) | 357, 632, 750, 1857, 1870, 1901 |
| BssMI | GATC | 8 cut(s) | 39, 54, 325, 462, 561, 658, 871, 903 |
| BssNI | GRCGYC | 2 cut(s) | 243, 1569 |
| BssSI | CACGAG | 1 cut(s) | 800 |
| BssT1I | CCWWGG | 2 cut(s) | 357, 632 |
| Bst2BI | CACGAG | 1 cut(s) | 800 |
| Bst2UI | CCWGG | 7 cut(s) | 247, 825, 1017, 1146, 1291, 1717, 1903 |
| Bst4CI | ACNGT | 3 cut(s) | 559, 1681, 1847 |
| Bst6I | CTCTTC | 2 cut(s) | 414, 633 |
| BstACI | GRCGYC | 2 cut(s) | 243, 1569 |
| BstBI | TTCGAA | 1 cut(s) | 1500 |
| BstDSI | CCRYGG | 4 cut(s) | 357, 632, 750, 1857 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstF5I | GGATG | 4 cut(s) | 154, 373, 649, 1111 |
| BstHHI | GCGC | 4 cut(s) | 319, 606, 748, 1151 |
| BstKTI | GATC | 8 cut(s) | 42, 57, 328, 465, 564, 661, 874, 906 |
| BstMAI | GTCTC | 5 cut(s) | 8, 406, 1515, 1725, 1789 |
| BstMBI | GATC | 8 cut(s) | 39, 54, 325, 462, 561, 658, 871, 903 |
| BstMCI | CGRYCG | 1 cut(s) | 111 |
| BstNI | CCWGG | 7 cut(s) | 247, 825, 1017, 1146, 1291, 1717, 1903 |
| BstNSI | RCATGY | 2 cut(s) | 25, 1743 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstSLI | GKGCMC | 2 cut(s) | 282, 1877 |
| BstV2I | GAAGAC | 2 cut(s) | 560, 900 |
| BstX2I | RGATCY | 2 cut(s) | 39, 54 |
| BstYI | RGATCY | 2 cut(s) | 39, 54 |
| BstZI | CGGCCG | 1 cut(s) | 108 |
| BsuI | GTATCC | 1 cut(s) | 371 |
| BtgI | CCRYGG | 4 cut(s) | 357, 632, 750, 1857 |
| BtgZI | GCGATG | 1 cut(s) | 99 |
| BtsCI | GGATG | 4 cut(s) | 154, 373, 649, 1111 |
| BtsI | GCAGTG | 2 cut(s) | 95, 1579 |
| BtsIMutI | CAGTG | 4 cut(s) | 95, 624, 1203, 1579 |
| BtuMI | TCGCGA | 1 cut(s) | 1533 |
| CfoI | GCGC | 4 cut(s) | 319, 606, 748, 1151 |
| Cfr10I | RCCGGY | 4 cut(s) | 106, 298, 424, 675 |
| Cfr42I | CCGCGG | 1 cut(s) | 1860 |
| CseI | GACGC | 3 cut(s) | 251, 1140, 1577 |
| CsiI | ACCWGGT | 1 cut(s) | 1715 |
| Csp6I | GTAC | 5 cut(s) | 150, 238, 860, 1064, 1671 |
| CviQI | GTAC | 5 cut(s) | 150, 238, 860, 1064, 1671 |
| DpnI | GATC | 8 cut(s) | 41, 56, 327, 464, 563, 660, 873, 905 |
| DpnII | GATC | 8 cut(s) | 39, 54, 325, 462, 561, 658, 871, 903 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 22, 669 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 22, 669 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| EagI | CGGCCG | 1 cut(s) | 108 |
| Eam1104I | CTCTTC | 2 cut(s) | 414, 633 |
| EarI | CTCTTC | 2 cut(s) | 414, 633 |
| EciI | GGCGGA | 2 cut(s) | 68, 1175 |
| EclXI | CGGCCG | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 2 cut(s) | 357, 632 |
| Eco24I | GRGCYC | 6 cut(s) | 282, 343, 436, 573, 1130, 1877 |
| Eco31I | GGTCTC | 2 cut(s) | 406, 1725 |
| Eco32I | GATATC | 1 cut(s) | 91 |
| Eco47I | GGWCC | 6 cut(s) | 616, 678, 827, 973, 1019, 1407 |
| Eco52I | CGGCCG | 1 cut(s) | 108 |
| Eco57I | CTGAAG | 3 cut(s) | 951, 1409, 1545 |
| Eco88I | CYCGRG | 1 cut(s) | 429 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoO109I | RGGNCCY | 3 cut(s) | 279, 1315, 1873 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoRII | CCWGG | 7 cut(s) | 245, 823, 1015, 1144, 1289, 1715, 1901 |
| EcoRV | GATATC | 1 cut(s) | 91 |
| EcoT14I | CCWWGG | 2 cut(s) | 357, 632 |
| EcoT38I | GRGCYC | 6 cut(s) | 282, 343, 436, 573, 1130, 1877 |
| ErhI | CCWWGG | 2 cut(s) | 357, 632 |
| Esp3I | CGTCTC | 1 cut(s) | 1789 |
| FaqI | GGGAC | 3 cut(s) | 736, 959, 1370 |
| FauI | CCCGC | 1 cut(s) | 1594 |
| FauNDI | CATATG | 1 cut(s) | 1333 |
| FblI | GTMKAC | 1 cut(s) | 1863 |
| FokI | GGATG | 4 cut(s) | 141, 380, 656, 1118 |
| FriOI | GRGCYC | 6 cut(s) | 282, 343, 436, 573, 1130, 1877 |
| FspBI | CTAG | 7 cut(s) | 18, 27, 809, 1490, 1520, 1628, 1884 |
| GlaI | GCGC | 4 cut(s) | 318, 605, 747, 1150 |
| GsaI | CCCAGC | 1 cut(s) | 696 |
| GsuI | CTGGAG | 2 cut(s) | 268, 462 |
| HapII | CCGG | 8 cut(s) | 107, 288, 299, 425, 676, 1405, 1453, 1870 |
| HgaI | GACGC | 3 cut(s) | 251, 1140, 1577 |
| HhaI | GCGC | 4 cut(s) | 319, 606, 748, 1151 |
| Hin1I | GRCGYC | 2 cut(s) | 243, 1569 |
| Hin6I | GCGC | 4 cut(s) | 317, 604, 746, 1149 |
| HinP1I | GCGC | 4 cut(s) | 317, 604, 746, 1149 |
| HincII | GTYRAC | 1 cut(s) | 1437 |
| HindII | GTYRAC | 1 cut(s) | 1437 |
| HinfI | GANTC | 6 cut(s) | 172, 273, 820, 962, 1624, 1778 |
| HpaII | CCGG | 8 cut(s) | 107, 288, 299, 425, 676, 1405, 1453, 1870 |
| HphI | GGTGA | 7 cut(s) | 571, 728, 902, 913, 958, 1210, 1456 |
| Hpy166II | GTNNAC | 5 cut(s) | 1022, 1064, 1218, 1437, 1864 |
| Hpy188I | TCNGA | 9 cut(s) | 171, 616, 760, 817, 967, 1125, 1621, 1774, 1792 |
| Hpy8I | GTNNAC | 5 cut(s) | 1022, 1064, 1218, 1437, 1864 |
| Hpy99I | CGWCG | 3 cut(s) | 245, 675, 1571 |
| HpyCH4III | ACNGT | 3 cut(s) | 559, 1681, 1847 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 782, 799, 1283 |
| Hsp92I | GRCGYC | 2 cut(s) | 243, 1569 |
| HspAI | GCGC | 4 cut(s) | 317, 604, 746, 1149 |
| Kpn2I | TCCGGA | 1 cut(s) | 1404 |
| KpnI | GGTACC | 1 cut(s) | 863 |
| KroI | GCCGGC | 2 cut(s) | 106, 298 |
| KroNI | GCCGGC | 2 cut(s) | 108, 300 |
| KspI | CCGCGG | 1 cut(s) | 1860 |
| Kzo9I | GATC | 8 cut(s) | 39, 54, 325, 462, 561, 658, 871, 903 |
| LmnI | GCTCC | 5 cut(s) | 249, 568, 931, 1753, 1805 |
| LweI | GCATC | 1 cut(s) | 343 |
| MabI | ACCWGGT | 1 cut(s) | 1715 |
| MaeI | CTAG | 7 cut(s) | 18, 27, 809, 1490, 1520, 1628, 1884 |
| MaeIII | GTNAC | 2 cut(s) | 503, 1444 |
| MalI | GATC | 8 cut(s) | 41, 56, 327, 464, 563, 660, 873, 905 |
| MbiI | CCGCTC | 3 cut(s) | 612, 1234, 1255 |
| MboI | GATC | 8 cut(s) | 39, 54, 325, 462, 561, 658, 871, 903 |
| MfeI | CAATTG | 1 cut(s) | 218 |
| MflI | RGATCY | 2 cut(s) | 39, 54 |
| MhlI | GDGCHC | 6 cut(s) | 282, 343, 436, 573, 1130, 1877 |
| MluCI | AATT | 6 cut(s) | 203, 218, 513, 1573, 1615, 1636 |
| MlyI | GAGTC | 3 cut(s) | 829, 971, 1787 |
| MmeI | TCCRAC | 1 cut(s) | 945 |
| MroI | TCCGGA | 1 cut(s) | 1404 |
| MroNI | GCCGGC | 2 cut(s) | 106, 298 |
| MseI | TTAA | 4 cut(s) | 186, 1260, 1704, 1727 |
| MspA1I | CMGCKG | 1 cut(s) | 1859 |
| MspI | CCGG | 8 cut(s) | 107, 288, 299, 425, 676, 1405, 1453, 1870 |
| MunI | CAATTG | 1 cut(s) | 218 |
| Mva1269I | GAATGC | 1 cut(s) | 1631 |
| MvaI | CCWGG | 7 cut(s) | 247, 825, 1017, 1146, 1291, 1717, 1903 |
| NaeI | GCCGGC | 2 cut(s) | 108, 300 |
| NciI | CCSGG | 3 cut(s) | 289, 1453, 1871 |
| NcoI | CCATGG | 2 cut(s) | 357, 632 |
| NdeI | CATATG | 1 cut(s) | 1333 |
| NdeII | GATC | 8 cut(s) | 39, 54, 325, 462, 561, 658, 871, 903 |
| NgoMIV | GCCGGC | 2 cut(s) | 106, 298 |
| NmuCI | GTSAC | 1 cut(s) | 1444 |
| NruI | TCGCGA | 1 cut(s) | 1533 |
| NspI | RCATGY | 2 cut(s) | 25, 1743 |
| NspV | TTCGAA | 1 cut(s) | 1500 |
| PaeR7I | CTCGAG | 1 cut(s) | 429 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 465, 570, 667 |
| PctI | GAATGC | 1 cut(s) | 1631 |
| PdiI | GCCGGC | 2 cut(s) | 108, 300 |
| PfeI | GAWTC | 3 cut(s) | 172, 273, 1624 |
| PflFI | GACNNNGTC | 1 cut(s) | 1717 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 121, 500, 533 |
| PleI | GAGTC | 3 cut(s) | 828, 970, 1786 |
| PpsI | GAGTC | 3 cut(s) | 828, 970, 1786 |
| PshBI | ATTAAT | 1 cut(s) | 1260 |
| PsiI | TTATAA | 1 cut(s) | 983 |
| Psp6I | CCWGG | 7 cut(s) | 245, 823, 1015, 1144, 1289, 1715, 1901 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspFI | CCCAGC | 1 cut(s) | 692 |
| PspGI | CCWGG | 7 cut(s) | 245, 823, 1015, 1144, 1289, 1715, 1901 |
| PspOMI | GGGCCC | 2 cut(s) | 278, 1873 |
| PspXI | VCTCGAGB | 1 cut(s) | 429 |
| PsuI | RGATCY | 2 cut(s) | 39, 54 |
| PsyI | GACNNNGTC | 1 cut(s) | 1717 |
| RruI | TCGCGA | 1 cut(s) | 1533 |
| RsaI | GTAC | 5 cut(s) | 151, 239, 861, 1065, 1672 |
| RsaNI | GTAC | 5 cut(s) | 150, 238, 860, 1064, 1671 |
| SacII | CCGCGG | 1 cut(s) | 1860 |
| SaqAI | TTAA | 4 cut(s) | 186, 1260, 1704, 1727 |
| Sau3AI | GATC | 8 cut(s) | 39, 54, 325, 462, 561, 658, 871, 903 |
| ScaI | AGTACT | 1 cut(s) | 1672 |
| SchI | GAGTC | 3 cut(s) | 829, 971, 1787 |
| SduI | GDGCHC | 6 cut(s) | 282, 343, 436, 573, 1130, 1877 |
| SexAI | ACCWGGT | 1 cut(s) | 1715 |
| SfaNI | GCATC | 1 cut(s) | 343 |
| Sfr274I | CTCGAG | 1 cut(s) | 429 |
| Sfr303I | CCGCGG | 1 cut(s) | 1860 |
| SfuI | TTCGAA | 1 cut(s) | 1500 |
| SgrBI | CCGCGG | 1 cut(s) | 1860 |
| SinI | GGWCC | 6 cut(s) | 616, 678, 827, 973, 1019, 1407 |
| SlaI | CTCGAG | 1 cut(s) | 429 |
| SmlI | CTYRAG | 5 cut(s) | 429, 771, 990, 1351, 1709 |
| SmoI | CTYRAG | 5 cut(s) | 429, 771, 990, 1351, 1709 |
| Sse9I | AATT | 6 cut(s) | 203, 218, 513, 1573, 1615, 1636 |
| SspMI | CTAG | 7 cut(s) | 18, 27, 809, 1490, 1520, 1628, 1884 |
| StyI | CCWWGG | 2 cut(s) | 357, 632 |
| TaaI | ACNGT | 3 cut(s) | 559, 1681, 1847 |
| TaqI | TCGA | 7 cut(s) | 12, 430, 661, 954, 1068, 1458, 1500 |
| TasI | AATT | 6 cut(s) | 203, 218, 513, 1573, 1615, 1636 |
| TatI | WGTACW | 2 cut(s) | 1063, 1670 |
| TauI | GCSGC | 9 cut(s) | 84, 140, 612, 1191, 1237, 1277, 1496, 1694, 1760 |
| TfiI | GAWTC | 3 cut(s) | 172, 273, 1624 |
| Tru1I | TTAA | 4 cut(s) | 186, 1260, 1704, 1727 |
| Tru9I | TTAA | 4 cut(s) | 186, 1260, 1704, 1727 |
| TscAI | CASTG | 4 cut(s) | 102, 631, 1210, 1586 |
| TseFI | GTSAC | 1 cut(s) | 1444 |
| Tsp45I | GTSAC | 1 cut(s) | 1444 |
| TspDTI | ATGAA | 5 cut(s) | 660, 777, 1110, 1278, 1686 |
| TspGWI | ACGGA | 1 cut(s) | 1771 |
| TspRI | CASTG | 4 cut(s) | 102, 631, 1210, 1586 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1717 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 121, 500, 533 |
| VpaK11BI | GGWCC | 6 cut(s) | 616, 678, 827, 973, 1019, 1407 |
| VspI | ATTAAT | 1 cut(s) | 1260 |
| XbaI | TCTAGA | 1 cut(s) | 1883 |
| XceI | RCATGY | 2 cut(s) | 25, 1743 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 449 |
| XhoI | CTCGAG | 1 cut(s) | 429 |
| XmiI | GTMKAC | 1 cut(s) | 1863 |
| XspI | CTAG | 7 cut(s) | 18, 27, 809, 1490, 1520, 1628, 1884 |
| ZrmI | AGTACT | 1 cut(s) | 1672 |