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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 44 |
| AccII | CGCG | 7 cut(s) | 133, 249, 285, 564, 597, 633, 635 |
| AciI | CCGC | 8 cut(s) | 238, 267, 329, 332, 516, 564, 609, 747 |
| AclWI | GGATC | 1 cut(s) | 425 |
| AcoI | YGGCCR | 2 cut(s) | 398, 606 |
| AcvI | CACGTG | 1 cut(s) | 374 |
| AdeI | CACNNNGTG | 1 cut(s) | 500 |
| AfaI | GTAC | 1 cut(s) | 579 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 297, 400 |
| AflIII | ACRYGT | 1 cut(s) | 373 |
| AgeI | ACCGGT | 1 cut(s) | 10 |
| AgsI | TTSAA | 1 cut(s) | 789 |
| AluBI | AGCT | 5 cut(s) | 126, 180, 456, 540, 629 |
| AluI | AGCT | 5 cut(s) | 126, 180, 456, 540, 629 |
| Alw21I | GWGCWC | 2 cut(s) | 128, 724 |
| Alw26I | GTCTC | 5 cut(s) | 96, 218, 301, 500, 606 |
| AlwI | GGATC | 1 cut(s) | 425 |
| Ama87I | CYCGRG | 3 cut(s) | 175, 293, 638 |
| AoxI | GGCC | 5 cut(s) | 321, 398, 424, 606, 669 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 80, 112 |
| AsiGI | ACCGGT | 1 cut(s) | 10 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 784 |
| AspLEI | GCGC | 4 cut(s) | 249, 369, 635, 637 |
| AspS9I | GGNCC | 5 cut(s) | 57, 300, 322, 425, 566 |
| AsuC2I | CCSGG | 5 cut(s) | 106, 316, 654, 673, 736 |
| AsuHPI | GGTGA | 3 cut(s) | 655, 677, 765 |
| AvaI | CYCGRG | 3 cut(s) | 175, 293, 638 |
| AvaII | GGWCC | 3 cut(s) | 57, 300, 566 |
| BaeGI | GKGCMC | 2 cut(s) | 363, 735 |
| BanII | GRGCYC | 3 cut(s) | 128, 255, 291 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 462, 494 |
| BauI | CACGAG | 3 cut(s) | 356, 498, 760 |
| BbrPI | CACGTG | 1 cut(s) | 374 |
| Bbv12I | GWGCWC | 2 cut(s) | 128, 724 |
| BccI | CCATC | 2 cut(s) | 47, 696 |
| BceAI | ACGGC | 1 cut(s) | 600 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 166, 187, 200, 221 |
| BcnI | CCSGG | 5 cut(s) | 106, 316, 654, 673, 736 |
| BcoDI | GTCTC | 5 cut(s) | 96, 218, 301, 500, 606 |
| BfaI | CTAG | 1 cut(s) | 626 |
| BfoI | RGCGCY | 1 cut(s) | 370 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 614 |
| BisI | GCNGC | 2 cut(s) | 332, 609 |
| BlsI | GCNGC | 2 cut(s) | 333, 610 |
| Bme1390I | CCNGG | 5 cut(s) | 106, 316, 654, 673, 736 |
| Bme18I | GGWCC | 3 cut(s) | 57, 300, 566 |
| BmeT110I | CYCGRG | 3 cut(s) | 175, 293, 638 |
| BmgT120I | GGNCC | 5 cut(s) | 57, 300, 322, 425, 566 |
| BmiI | GGNNCC | 4 cut(s) | 58, 149, 324, 427 |
| BmrFI | CCNGG | 5 cut(s) | 106, 316, 654, 673, 736 |
| BmsI | GCATC | 1 cut(s) | 146 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 466, 498 |
| BpuEI | CTTGAG | 1 cut(s) | 325 |
| BpuMI | CCSGG | 5 cut(s) | 106, 316, 654, 673, 736 |
| Bsa29I | ATCGAT | 2 cut(s) | 42, 114 |
| BsaAI | YACGTR | 1 cut(s) | 374 |
| BsaI | GGTCTC | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 5 cut(s) | 105, 462, 612, 672, 734 |
| BsaWI | WCCGGW | 2 cut(s) | 10, 379 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 711, 741 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 297, 400 |
| Bse118I | RCCGGY | 5 cut(s) | 10, 243, 269, 334, 400 |
| BseCI | ATCGAT | 2 cut(s) | 42, 114 |
| BseDI | CCNNGG | 5 cut(s) | 105, 462, 612, 672, 734 |
| BseGI | GGATG | 3 cut(s) | 58, 384, 670 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 297, 400 |
| BsePI | GCGCGC | 1 cut(s) | 633 |
| BseRI | GAGGAG | 2 cut(s) | 518, 639 |
| BseSI | GKGCMC | 2 cut(s) | 363, 735 |
| BseX3I | CGGCCG | 2 cut(s) | 398, 606 |
| Bsh1236I | CGCG | 7 cut(s) | 133, 249, 285, 564, 597, 633, 635 |
| Bsh1285I | CGRYCG | 2 cut(s) | 401, 609 |
| BshFI | GGCC | 5 cut(s) | 323, 400, 426, 608, 671 |
| BshTI | ACCGGT | 1 cut(s) | 10 |
| BshVI | ATCGAT | 2 cut(s) | 42, 114 |
| BsiEI | CGRYCG | 2 cut(s) | 401, 609 |
| BsiHKAI | GWGCWC | 2 cut(s) | 128, 724 |
| BsiHKCI | CYCGRG | 3 cut(s) | 175, 293, 638 |
| BslFI | GGGAC | 5 cut(s) | 70, 122, 510, 684, 689 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 297, 400 |
| BsmAI | GTCTC | 5 cut(s) | 96, 218, 301, 500, 606 |
| BsmFI | GGGAC | 5 cut(s) | 70, 122, 510, 684, 689 |
| BsnI | GGCC | 5 cut(s) | 323, 400, 426, 608, 671 |
| Bso31I | GGTCTC | 1 cut(s) | 218 |
| BsoBI | CYCGRG | 3 cut(s) | 175, 293, 638 |
| Bsp1286I | GDGCHC | 6 cut(s) | 128, 255, 291, 363, 724, 735 |
| Bsp143I | GATC | 1 cut(s) | 430 |
| Bsp68I | TCGCGA | 3 cut(s) | 133, 285, 597 |
| BspACI | CCGC | 8 cut(s) | 238, 267, 329, 332, 516, 564, 609, 747 |
| BspANI | GGCC | 5 cut(s) | 323, 400, 426, 608, 671 |
| BspDI | ATCGAT | 2 cut(s) | 42, 114 |
| BspFNI | CGCG | 7 cut(s) | 133, 249, 285, 564, 597, 633, 635 |
| BspLI | GGNNCC | 4 cut(s) | 58, 149, 324, 427 |
| BspPI | GGATC | 1 cut(s) | 425 |
| BspQI | GCTCTTC | 1 cut(s) | 133 |
| BspTNI | GGTCTC | 1 cut(s) | 218 |
| BsrFI | RCCGGY | 5 cut(s) | 10, 243, 269, 334, 400 |
| BssAI | RCCGGY | 5 cut(s) | 10, 243, 269, 334, 400 |
| BssECI | CCNNGG | 5 cut(s) | 105, 462, 612, 672, 734 |
| BssHII | GCGCGC | 1 cut(s) | 633 |
| BssMI | GATC | 1 cut(s) | 430 |
| BssSI | CACGAG | 3 cut(s) | 356, 498, 760 |
| Bst2BI | CACGAG | 3 cut(s) | 356, 498, 760 |
| Bst4CI | ACNGT | 2 cut(s) | 212, 577 |
| Bst6I | CTCTTC | 3 cut(s) | 57, 133, 465 |
| BstBAI | YACGTR | 1 cut(s) | 374 |
| BstF5I | GGATG | 3 cut(s) | 58, 384, 670 |
| BstFNI | CGCG | 7 cut(s) | 133, 249, 285, 564, 597, 633, 635 |
| BstH2I | RGCGCY | 1 cut(s) | 370 |
| BstHHI | GCGC | 4 cut(s) | 249, 369, 635, 637 |
| BstKTI | GATC | 1 cut(s) | 433 |
| BstMAI | GTCTC | 5 cut(s) | 96, 218, 301, 500, 606 |
| BstMBI | GATC | 1 cut(s) | 430 |
| BstMCI | CGRYCG | 2 cut(s) | 401, 609 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 246, 406, 614 |
| BstNSI | RCATGY | 1 cut(s) | 769 |
| BstSCI | CCNGG | 5 cut(s) | 104, 314, 652, 671, 734 |
| BstSLI | GKGCMC | 2 cut(s) | 363, 735 |
| BstUI | CGCG | 7 cut(s) | 133, 249, 285, 564, 597, 633, 635 |
| BstZI | CGGCCG | 2 cut(s) | 398, 606 |
| Bsu15I | ATCGAT | 2 cut(s) | 42, 114 |
| BsuRI | GGCC | 5 cut(s) | 323, 400, 426, 608, 671 |
| BsuTUI | ATCGAT | 2 cut(s) | 42, 114 |
| BtsCI | GGATG | 3 cut(s) | 58, 384, 670 |
| BtuMI | TCGCGA | 3 cut(s) | 133, 285, 597 |
| CfoI | GCGC | 4 cut(s) | 249, 369, 635, 637 |
| Cfr10I | RCCGGY | 5 cut(s) | 10, 243, 269, 334, 400 |
| Cfr13I | GGNCC | 5 cut(s) | 57, 300, 322, 425, 566 |
| ClaI | ATCGAT | 2 cut(s) | 42, 114 |
| CseI | GACGC | 1 cut(s) | 269 |
| Csp6I | GTAC | 1 cut(s) | 578 |
| CspAI | ACCGGT | 1 cut(s) | 10 |
| CviAII | CATG | 2 cut(s) | 257, 766 |
| CviQI | GTAC | 1 cut(s) | 578 |
| DpnI | GATC | 1 cut(s) | 432 |
| DpnII | GATC | 1 cut(s) | 430 |
| DraIII | CACNNNGTG | 1 cut(s) | 500 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 44 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 44 |
| EaeI | YGGCCR | 2 cut(s) | 398, 606 |
| EagI | CGGCCG | 2 cut(s) | 398, 606 |
| Eam1104I | CTCTTC | 3 cut(s) | 57, 133, 465 |
| EarI | CTCTTC | 3 cut(s) | 57, 133, 465 |
| EciI | GGCGGA | 1 cut(s) | 318 |
| Ecl136II | GAGCTC | 1 cut(s) | 126 |
| EclXI | CGGCCG | 2 cut(s) | 398, 606 |
| Eco24I | GRGCYC | 3 cut(s) | 128, 255, 291 |
| Eco31I | GGTCTC | 1 cut(s) | 218 |
| Eco32I | GATATC | 1 cut(s) | 706 |
| Eco47I | GGWCC | 3 cut(s) | 57, 300, 566 |
| Eco52I | CGGCCG | 2 cut(s) | 398, 606 |
| Eco53kI | GAGCTC | 1 cut(s) | 126 |
| Eco72I | CACGTG | 1 cut(s) | 374 |
| Eco88I | CYCGRG | 3 cut(s) | 175, 293, 638 |
| EcoICRI | GAGCTC | 1 cut(s) | 126 |
| EcoO109I | RGGNCCY | 2 cut(s) | 300, 322 |
| EcoRV | GATATC | 1 cut(s) | 706 |
| EcoT38I | GRGCYC | 3 cut(s) | 128, 255, 291 |
| FaeI | CATG | 2 cut(s) | 260, 769 |
| FaiI | YATR | 8 cut(s) | 72, 164, 258, 418, 446, 492, 710, 767 |
| FaqI | GGGAC | 5 cut(s) | 70, 122, 510, 684, 689 |
| FatI | CATG | 2 cut(s) | 256, 765 |
| FauI | CCCGC | 2 cut(s) | 274, 740 |
| Fnu4HI | GCNGC | 2 cut(s) | 332, 609 |
| FokI | GGATG | 3 cut(s) | 65, 371, 677 |
| FriOI | GRGCYC | 3 cut(s) | 128, 255, 291 |
| Fsp4HI | GCNGC | 2 cut(s) | 332, 609 |
| FspBI | CTAG | 1 cut(s) | 626 |
| GlaI | GCGC | 4 cut(s) | 248, 368, 634, 636 |
| GluI | GCNGC | 2 cut(s) | 332, 609 |
| HaeII | RGCGCY | 1 cut(s) | 370 |
| HaeIII | GGCC | 5 cut(s) | 323, 400, 426, 608, 671 |
| HgaI | GACGC | 1 cut(s) | 269 |
| HhaI | GCGC | 4 cut(s) | 249, 369, 635, 637 |
| Hin1II | CATG | 2 cut(s) | 260, 769 |
| Hin6I | GCGC | 4 cut(s) | 247, 367, 633, 635 |
| HinP1I | GCGC | 4 cut(s) | 247, 367, 633, 635 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HinfI | GANTC | 3 cut(s) | 599, 646, 697 |
| HphI | GGTGA | 3 cut(s) | 655, 677, 765 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 2 cut(s) | 463, 719 |
| Hpy188III | TCNNGA | 9 cut(s) | 132, 226, 284, 295, 500, 527, 596, 701, 760 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| Hpy99I | CGWCG | 2 cut(s) | 586, 731 |
| HpyAV | CCTTC | 4 cut(s) | 29, 230, 313, 602 |
| HpyCH4III | ACNGT | 2 cut(s) | 212, 577 |
| HpyCH4IV | ACGT | 3 cut(s) | 119, 373, 420 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 208, 439, 494 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 246, 406, 614 |
| HpySE526I | ACGT | 3 cut(s) | 119, 373, 420 |
| Hsp92II | CATG | 2 cut(s) | 260, 769 |
| HspAI | GCGC | 4 cut(s) | 247, 367, 633, 635 |
| KroI | GCCGGC | 1 cut(s) | 334 |
| KroNI | GCCGGC | 1 cut(s) | 336 |
| Kzo9I | GATC | 1 cut(s) | 430 |
| LguI | GCTCTTC | 1 cut(s) | 133 |
| LmnI | GCTCC | 2 cut(s) | 545, 719 |
| LweI | GCATC | 1 cut(s) | 146 |
| MaeI | CTAG | 1 cut(s) | 626 |
| MaeII | ACGT | 3 cut(s) | 119, 373, 420 |
| MaeIII | GTNAC | 2 cut(s) | 643, 757 |
| MalI | GATC | 1 cut(s) | 432 |
| MboI | GATC | 1 cut(s) | 430 |
| MboII | GAAGA | 5 cut(s) | 74, 120, 211, 482, 745 |
| MhlI | GDGCHC | 6 cut(s) | 128, 255, 291, 363, 724, 735 |
| MluCI | AATT | 3 cut(s) | 25, 99, 279 |
| MlyI | GAGTC | 3 cut(s) | 608, 640, 706 |
| MroNI | GCCGGC | 1 cut(s) | 334 |
| MroXI | GAANNNNTTC | 1 cut(s) | 784 |
| MseI | TTAA | 1 cut(s) | 33 |
| MslI | CAYNNNNRTG | 1 cut(s) | 764 |
| MspR9I | CCNGG | 5 cut(s) | 106, 316, 654, 673, 736 |
| MvnI | CGCG | 7 cut(s) | 133, 249, 285, 564, 597, 633, 635 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 246, 406, 614 |
| NaeI | GCCGGC | 1 cut(s) | 336 |
| NciI | CCSGG | 5 cut(s) | 106, 316, 654, 673, 736 |
| NdeII | GATC | 1 cut(s) | 430 |
| NgoMIV | GCCGGC | 1 cut(s) | 334 |
| NlaIII | CATG | 2 cut(s) | 260, 769 |
| NlaIV | GGNNCC | 4 cut(s) | 58, 149, 324, 427 |
| NmeAIII | GCCGAG | 1 cut(s) | 637 |
| NmuCI | GTSAC | 2 cut(s) | 643, 757 |
| NruI | TCGCGA | 3 cut(s) | 133, 285, 597 |
| NspI | RCATGY | 1 cut(s) | 769 |
| PaeI | GCATGC | 1 cut(s) | 769 |
| PaeR7I | CTCGAG | 3 cut(s) | 175, 293, 638 |
| PauI | GCGCGC | 1 cut(s) | 633 |
| PciSI | GCTCTTC | 1 cut(s) | 133 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 282, 426, 723 |
| PdiI | GCCGGC | 1 cut(s) | 336 |
| PdmI | GAANNNNTTC | 1 cut(s) | 784 |
| PfoI | TCCNGGA | 1 cut(s) | 652 |
| PinAI | ACCGGT | 1 cut(s) | 10 |
| PkrI | GCNGC | 2 cut(s) | 333, 610 |
| PleI | GAGTC | 3 cut(s) | 607, 640, 705 |
| PmaCI | CACGTG | 1 cut(s) | 374 |
| PmlI | CACGTG | 1 cut(s) | 374 |
| PpsI | GAGTC | 3 cut(s) | 607, 640, 705 |
| Ppu21I | YACGTR | 1 cut(s) | 374 |
| PpuMI | RGGWCCY | 1 cut(s) | 300 |
| Psp124BI | GAGCTC | 1 cut(s) | 128 |
| Psp5II | RGGWCCY | 1 cut(s) | 300 |
| PspCI | CACGTG | 1 cut(s) | 374 |
| PspN4I | GGNNCC | 4 cut(s) | 58, 149, 324, 427 |
| PspPI | GGNCC | 5 cut(s) | 57, 300, 322, 425, 566 |
| PspPPI | RGGWCCY | 1 cut(s) | 300 |
| PspXI | VCTCGAGB | 2 cut(s) | 175, 638 |
| PteI | GCGCGC | 1 cut(s) | 633 |
| RruI | TCGCGA | 3 cut(s) | 133, 285, 597 |
| RsaI | GTAC | 1 cut(s) | 579 |
| RsaNI | GTAC | 1 cut(s) | 578 |
| RseI | CAYNNNNRTG | 1 cut(s) | 764 |
| SacI | GAGCTC | 1 cut(s) | 128 |
| SapI | GCTCTTC | 1 cut(s) | 133 |
| SaqAI | TTAA | 1 cut(s) | 33 |
| SatI | GCNGC | 2 cut(s) | 332, 609 |
| Sau3AI | GATC | 1 cut(s) | 430 |
| Sau96I | GGNCC | 5 cut(s) | 57, 300, 322, 425, 566 |
| SchI | GAGTC | 3 cut(s) | 608, 640, 706 |
| ScrFI | CCNGG | 5 cut(s) | 106, 316, 654, 673, 736 |
| SduI | GDGCHC | 6 cut(s) | 128, 255, 291, 363, 724, 735 |
| SfaNI | GCATC | 1 cut(s) | 146 |
| Sfr274I | CTCGAG | 3 cut(s) | 175, 293, 638 |
| SinI | GGWCC | 3 cut(s) | 57, 300, 566 |
| SlaI | CTCGAG | 3 cut(s) | 175, 293, 638 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 764 |
| SmlI | CTYRAG | 4 cut(s) | 175, 293, 304, 638 |
| SmoI | CTYRAG | 4 cut(s) | 175, 293, 304, 638 |
| SphI | GCATGC | 1 cut(s) | 769 |
| Sse9I | AATT | 3 cut(s) | 25, 99, 279 |
| SsiI | CCGC | 8 cut(s) | 238, 267, 329, 332, 516, 564, 609, 747 |
| SspMI | CTAG | 1 cut(s) | 626 |
| SstI | GAGCTC | 1 cut(s) | 128 |
| StyD4I | CCNGG | 5 cut(s) | 104, 314, 652, 671, 734 |
| TaaI | ACNGT | 2 cut(s) | 212, 577 |
| TaiI | ACGT | 3 cut(s) | 122, 376, 423 |
| TaqI | TCGA | 7 cut(s) | 42, 114, 170, 176, 294, 468, 639 |
| TaqII | GACCGA | 1 cut(s) | 74 |
| TasI | AATT | 3 cut(s) | 25, 99, 279 |
| TauI | GCSGC | 2 cut(s) | 334, 611 |
| Tru1I | TTAA | 1 cut(s) | 33 |
| Tru9I | TTAA | 1 cut(s) | 33 |
| TseFI | GTSAC | 2 cut(s) | 643, 757 |
| Tsp45I | GTSAC | 2 cut(s) | 643, 757 |
| TspGWI | ACGGA | 2 cut(s) | 548, 693 |
| VpaK11BI | GGWCC | 3 cut(s) | 57, 300, 566 |
| XceI | RCATGY | 1 cut(s) | 769 |
| XhoI | CTCGAG | 3 cut(s) | 175, 293, 638 |
| XmnI | GAANNNNTTC | 1 cut(s) | 784 |
| XspI | CTAG | 1 cut(s) | 626 |