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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 16 |
| AccB1I | GGYRCC | 1 cut(s) | 221 |
| AccBSI | CCGCTC | 1 cut(s) | 626 |
| AccII | CGCG | 3 cut(s) | 417, 546, 640 |
| AccIII | TCCGGA | 1 cut(s) | 395 |
| AciI | CCGC | 6 cut(s) | 149, 195, 271, 327, 357, 626 |
| AcoI | YGGCCR | 2 cut(s) | 192, 232 |
| AcsI | RAATTY | 1 cut(s) | 598 |
| AcyI | GRCGYC | 1 cut(s) | 222 |
| AfaI | GTAC | 1 cut(s) | 551 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 19, 395, 666, 667 |
| AgeI | ACCGGT | 1 cut(s) | 314 |
| AgsI | TTSAA | 2 cut(s) | 56, 155 |
| AjnI | CCWGG | 1 cut(s) | 229 |
| AluBI | AGCT | 2 cut(s) | 42, 413 |
| AluI | AGCT | 2 cut(s) | 42, 413 |
| Alw26I | GTCTC | 1 cut(s) | 704 |
| Aor13HI | TCCGGA | 1 cut(s) | 395 |
| AoxI | GGCC | 5 cut(s) | 9, 192, 232, 453, 669 |
| ApeKI | GCWGC | 1 cut(s) | 629 |
| ApoI | RAATTY | 1 cut(s) | 598 |
| AsiGI | ACCGGT | 1 cut(s) | 314 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 569 |
| AspLEI | GCGC | 3 cut(s) | 127, 224, 506 |
| AspS9I | GGNCC | 3 cut(s) | 10, 398, 669 |
| AsuC2I | CCSGG | 4 cut(s) | 113, 141, 607, 707 |
| AsuHPI | GGTGA | 4 cut(s) | 314, 439, 461, 550 |
| AsuNHI | GCTAGC | 1 cut(s) | 409 |
| AvaII | GGWCC | 1 cut(s) | 398 |
| BaeGI | GKGCMC | 1 cut(s) | 661 |
| BanI | GGYRCC | 1 cut(s) | 221 |
| BanII | GRGCYC | 1 cut(s) | 270 |
| BauI | CACGAG | 2 cut(s) | 86, 695 |
| BbvI | GCAGC | 1 cut(s) | 641 |
| BccI | CCATC | 1 cut(s) | 563 |
| BceAI | ACGGC | 1 cut(s) | 186 |
| BciT130I | CCWGG | 1 cut(s) | 231 |
| BcnI | CCSGG | 4 cut(s) | 113, 141, 607, 707 |
| BcoDI | GTCTC | 1 cut(s) | 704 |
| BfaI | CTAG | 4 cut(s) | 321, 410, 501, 521 |
| BfmI | CTRYAG | 1 cut(s) | 593 |
| BfoI | RGCGCY | 2 cut(s) | 128, 225 |
| BfuAI | ACCTGC | 1 cut(s) | 16 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 200 |
| BisI | GCNGC | 4 cut(s) | 195, 328, 627, 630 |
| BlsI | GCNGC | 4 cut(s) | 196, 329, 628, 631 |
| Bme1390I | CCNGG | 5 cut(s) | 113, 141, 231, 607, 707 |
| Bme18I | GGWCC | 1 cut(s) | 398 |
| BmgT120I | GGNCC | 3 cut(s) | 10, 398, 669 |
| BmiI | GGNNCC | 6 cut(s) | 12, 93, 223, 331, 342, 354 |
| BmrFI | CCNGG | 5 cut(s) | 113, 141, 231, 607, 707 |
| BmsI | GCATC | 4 cut(s) | 67, 136, 212, 515 |
| BmtI | GCTAGC | 1 cut(s) | 413 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 52, 84 |
| BpuEI | CTTGAG | 2 cut(s) | 368, 443 |
| BpuMI | CCSGG | 4 cut(s) | 113, 141, 607, 707 |
| BsaHI | GRCGYC | 1 cut(s) | 222 |
| BsaJI | CCNNGG | 3 cut(s) | 207, 456, 605 |
| BsaWI | WCCGGW | 5 cut(s) | 19, 314, 395, 400, 437 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 19, 395, 666, 667 |
| Bse118I | RCCGGY | 1 cut(s) | 314 |
| Bse1I | ACTGG | 1 cut(s) | 247 |
| Bse3DI | GCAATG | 1 cut(s) | 377 |
| BseAI | TCCGGA | 1 cut(s) | 395 |
| BseBI | CCWGG | 1 cut(s) | 231 |
| BseDI | CCNNGG | 3 cut(s) | 207, 456, 605 |
| BseGI | GGATG | 3 cut(s) | 82, 203, 506 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 19, 395, 666, 667 |
| BseMI | GCAATG | 1 cut(s) | 377 |
| BseNI | ACTGG | 1 cut(s) | 247 |
| BseRI | GAGGAG | 1 cut(s) | 681 |
| BseSI | GKGCMC | 1 cut(s) | 661 |
| BseX3I | CGGCCG | 1 cut(s) | 192 |
| BseXI | GCAGC | 1 cut(s) | 641 |
| BsgI | GTGCAG | 1 cut(s) | 44 |
| Bsh1236I | CGCG | 3 cut(s) | 417, 546, 640 |
| Bsh1285I | CGRYCG | 1 cut(s) | 195 |
| BshFI | GGCC | 5 cut(s) | 11, 194, 234, 455, 671 |
| BshNI | GGYRCC | 1 cut(s) | 221 |
| BshTI | ACCGGT | 1 cut(s) | 314 |
| BsiEI | CGRYCG | 1 cut(s) | 195 |
| BslFI | GGGAC | 1 cut(s) | 468 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 19, 395, 666, 667 |
| BsmAI | GTCTC | 1 cut(s) | 704 |
| BsmFI | GGGAC | 1 cut(s) | 468 |
| BsnI | GGCC | 5 cut(s) | 11, 194, 234, 455, 671 |
| Bsp1286I | GDGCHC | 2 cut(s) | 270, 661 |
| Bsp13I | TCCGGA | 1 cut(s) | 395 |
| Bsp68I | TCGCGA | 1 cut(s) | 546 |
| BspACI | CCGC | 6 cut(s) | 149, 195, 271, 327, 357, 626 |
| BspANI | GGCC | 5 cut(s) | 11, 194, 234, 455, 671 |
| BspEI | TCCGGA | 1 cut(s) | 395 |
| BspFNI | CGCG | 3 cut(s) | 417, 546, 640 |
| BspLI | GGNNCC | 6 cut(s) | 12, 93, 223, 331, 342, 354 |
| BspMI | ACCTGC | 1 cut(s) | 16 |
| BspOI | GCTAGC | 1 cut(s) | 413 |
| BspT107I | GGYRCC | 1 cut(s) | 221 |
| BsrBI | CCGCTC | 1 cut(s) | 626 |
| BsrDI | GCAATG | 1 cut(s) | 377 |
| BsrFI | RCCGGY | 1 cut(s) | 314 |
| BsrI | ACTGG | 1 cut(s) | 247 |
| BssAI | RCCGGY | 1 cut(s) | 314 |
| BssECI | CCNNGG | 3 cut(s) | 207, 456, 605 |
| BssNI | GRCGYC | 1 cut(s) | 222 |
| BssSI | CACGAG | 2 cut(s) | 86, 695 |
| BssT1I | CCWWGG | 1 cut(s) | 456 |
| Bst2BI | CACGAG | 2 cut(s) | 86, 695 |
| Bst2UI | CCWGG | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 1 cut(s) | 473 |
| BstACI | GRCGYC | 1 cut(s) | 222 |
| BstC8I | GCNNGC | 5 cut(s) | 44, 411, 415, 419, 642 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 3 cut(s) | 82, 203, 506 |
| BstFNI | CGCG | 3 cut(s) | 417, 546, 640 |
| BstH2I | RGCGCY | 2 cut(s) | 128, 225 |
| BstHHI | GCGC | 3 cut(s) | 127, 224, 506 |
| BstMAI | GTCTC | 1 cut(s) | 704 |
| BstMCI | CGRYCG | 1 cut(s) | 195 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 122, 200, 221, 279, 288 |
| BstNI | CCWGG | 1 cut(s) | 231 |
| BstSCI | CCNGG | 5 cut(s) | 111, 139, 229, 605, 705 |
| BstSFI | CTRYAG | 1 cut(s) | 593 |
| BstSLI | GKGCMC | 1 cut(s) | 661 |
| BstUI | CGCG | 3 cut(s) | 417, 546, 640 |
| BstV1I | GCAGC | 1 cut(s) | 641 |
| BstZI | CGGCCG | 1 cut(s) | 192 |
| BsuRI | GGCC | 5 cut(s) | 11, 194, 234, 455, 671 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtgZI | GCGATG | 1 cut(s) | 159 |
| BtsCI | GGATG | 3 cut(s) | 82, 203, 506 |
| BtsIMutI | CAGTG | 1 cut(s) | 240 |
| BtuMI | TCGCGA | 1 cut(s) | 546 |
| BveI | ACCTGC | 1 cut(s) | 16 |
| Cac8I | GCNNGC | 5 cut(s) | 44, 411, 415, 419, 642 |
| CfoI | GCGC | 3 cut(s) | 127, 224, 506 |
| Cfr10I | RCCGGY | 1 cut(s) | 314 |
| Cfr13I | GGNCC | 3 cut(s) | 10, 398, 669 |
| CpoI | CGGWCCG | 1 cut(s) | 398 |
| CseI | GACGC | 1 cut(s) | 296 |
| Csp6I | GTAC | 1 cut(s) | 550 |
| CspAI | ACCGGT | 1 cut(s) | 314 |
| CspI | CGGWCCG | 1 cut(s) | 398 |
| CviAII | CATG | 1 cut(s) | 279 |
| CviQI | GTAC | 1 cut(s) | 550 |
| DinI | GGCGCC | 1 cut(s) | 223 |
| EaeI | YGGCCR | 2 cut(s) | 192, 232 |
| EagI | CGGCCG | 1 cut(s) | 192 |
| EclXI | CGGCCG | 1 cut(s) | 192 |
| Eco130I | CCWWGG | 1 cut(s) | 456 |
| Eco24I | GRGCYC | 1 cut(s) | 270 |
| Eco32I | GATATC | 1 cut(s) | 490 |
| Eco47I | GGWCC | 1 cut(s) | 398 |
| Eco52I | CGGCCG | 1 cut(s) | 192 |
| EcoRII | CCWGG | 1 cut(s) | 229 |
| EcoRV | GATATC | 1 cut(s) | 490 |
| EcoT14I | CCWWGG | 1 cut(s) | 456 |
| EcoT38I | GRGCYC | 1 cut(s) | 270 |
| EgeI | GGCGCC | 1 cut(s) | 223 |
| EheI | GGCGCC | 1 cut(s) | 223 |
| ErhI | CCWWGG | 1 cut(s) | 456 |
| FaeI | CATG | 1 cut(s) | 282 |
| FaiI | YATR | 3 cut(s) | 32, 280, 446 |
| FaqI | GGGAC | 1 cut(s) | 468 |
| FatI | CATG | 1 cut(s) | 278 |
| FauI | CCCGC | 2 cut(s) | 278, 364 |
| Fnu4HI | GCNGC | 4 cut(s) | 195, 328, 627, 630 |
| FokI | GGATG | 3 cut(s) | 89, 190, 493 |
| FriOI | GRGCYC | 1 cut(s) | 270 |
| Fsp4HI | GCNGC | 4 cut(s) | 195, 328, 627, 630 |
| FspBI | CTAG | 4 cut(s) | 321, 410, 501, 521 |
| GlaI | GCGC | 3 cut(s) | 126, 223, 505 |
| GluI | GCNGC | 4 cut(s) | 195, 328, 627, 630 |
| HaeII | RGCGCY | 2 cut(s) | 128, 225 |
| HaeIII | GGCC | 5 cut(s) | 11, 194, 234, 455, 671 |
| HgaI | GACGC | 1 cut(s) | 296 |
| HhaI | GCGC | 3 cut(s) | 127, 224, 506 |
| Hin1I | GRCGYC | 1 cut(s) | 222 |
| Hin1II | CATG | 1 cut(s) | 282 |
| Hin6I | GCGC | 3 cut(s) | 125, 222, 504 |
| HinP1I | GCGC | 3 cut(s) | 125, 222, 504 |
| HincII | GTYRAC | 1 cut(s) | 259 |
| HindII | GTYRAC | 1 cut(s) | 259 |
| HinfI | GANTC | 3 cut(s) | 430, 481, 688 |
| HpaI | GTTAAC | 1 cut(s) | 259 |
| HphI | GGTGA | 4 cut(s) | 314, 439, 461, 550 |
| Hpy166II | GTNNAC | 2 cut(s) | 259, 469 |
| Hpy188I | TCNGA | 1 cut(s) | 76 |
| Hpy8I | GTNNAC | 2 cut(s) | 259, 469 |
| Hpy99I | CGWCG | 5 cut(s) | 172, 312, 338, 515, 546 |
| HpyAV | CCTTC | 4 cut(s) | 118, 188, 291, 402 |
| HpyCH4III | ACNGT | 1 cut(s) | 473 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 25, 80 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 122, 200, 221, 279, 288 |
| Hsp92I | GRCGYC | 1 cut(s) | 222 |
| Hsp92II | CATG | 1 cut(s) | 282 |
| HspAI | GCGC | 3 cut(s) | 125, 222, 504 |
| KasI | GGCGCC | 1 cut(s) | 221 |
| Kpn2I | TCCGGA | 1 cut(s) | 395 |
| KspAI | GTTAAC | 1 cut(s) | 259 |
| LmnI | GCTCC | 4 cut(s) | 287, 335, 340, 358 |
| Lsp1109I | GCAGC | 1 cut(s) | 641 |
| LweI | GCATC | 4 cut(s) | 67, 136, 212, 515 |
| MaeI | CTAG | 4 cut(s) | 321, 410, 501, 521 |
| MaeIII | GTNAC | 2 cut(s) | 427, 697 |
| MbiI | CCGCTC | 1 cut(s) | 626 |
| MboII | GAAGA | 1 cut(s) | 530 |
| MfeI | CAATTG | 1 cut(s) | 5 |
| MhlI | GDGCHC | 2 cut(s) | 270, 661 |
| MluCI | AATT | 4 cut(s) | 5, 135, 587, 598 |
| Mly113I | GGCGCC | 1 cut(s) | 222 |
| MlyI | GAGTC | 3 cut(s) | 424, 490, 682 |
| MroI | TCCGGA | 1 cut(s) | 395 |
| MroXI | GAANNNNTTC | 1 cut(s) | 569 |
| MseI | TTAA | 2 cut(s) | 258, 615 |
| MspR9I | CCNGG | 5 cut(s) | 113, 141, 231, 607, 707 |
| MunI | CAATTG | 1 cut(s) | 5 |
| MvaI | CCWGG | 1 cut(s) | 231 |
| MvnI | CGCG | 3 cut(s) | 417, 546, 640 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 122, 200, 221, 279, 288 |
| NarI | GGCGCC | 1 cut(s) | 222 |
| NciI | CCSGG | 4 cut(s) | 113, 141, 607, 707 |
| NheI | GCTAGC | 1 cut(s) | 409 |
| NlaIII | CATG | 1 cut(s) | 282 |
| NlaIV | GGNNCC | 6 cut(s) | 12, 93, 223, 331, 342, 354 |
| NmuCI | GTSAC | 2 cut(s) | 427, 697 |
| NruI | TCGCGA | 1 cut(s) | 546 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 558 |
| PdmI | GAANNNNTTC | 1 cut(s) | 569 |
| PfoI | TCCNGGA | 1 cut(s) | 705 |
| PinAI | ACCGGT | 1 cut(s) | 314 |
| PkrI | GCNGC | 4 cut(s) | 196, 329, 628, 631 |
| PleI | GAGTC | 3 cut(s) | 424, 489, 682 |
| PluTI | GGCGCC | 1 cut(s) | 225 |
| PpsI | GAGTC | 3 cut(s) | 424, 489, 682 |
| Psp6I | CCWGG | 1 cut(s) | 229 |
| PspGI | CCWGG | 1 cut(s) | 229 |
| PspN4I | GGNNCC | 6 cut(s) | 12, 93, 223, 331, 342, 354 |
| PspPI | GGNCC | 3 cut(s) | 10, 398, 669 |
| RruI | TCGCGA | 1 cut(s) | 546 |
| RsaI | GTAC | 1 cut(s) | 551 |
| RsaNI | GTAC | 1 cut(s) | 550 |
| Rsr2I | CGGWCCG | 1 cut(s) | 398 |
| RsrII | CGGWCCG | 1 cut(s) | 398 |
| SaqAI | TTAA | 2 cut(s) | 258, 615 |
| SatI | GCNGC | 4 cut(s) | 195, 328, 627, 630 |
| Sau96I | GGNCC | 3 cut(s) | 10, 398, 669 |
| SchI | GAGTC | 3 cut(s) | 424, 490, 682 |
| ScrFI | CCNGG | 5 cut(s) | 113, 141, 231, 607, 707 |
| SduI | GDGCHC | 2 cut(s) | 270, 661 |
| SetI | ASST | 7 cut(s) | 30, 44, 70, 85, 135, 415, 429 |
| SfaNI | GCATC | 4 cut(s) | 67, 136, 212, 515 |
| SfcI | CTRYAG | 1 cut(s) | 593 |
| SfoI | GGCGCC | 1 cut(s) | 223 |
| SinI | GGWCC | 1 cut(s) | 398 |
| SmlI | CTYRAG | 2 cut(s) | 347, 422 |
| SmoI | CTYRAG | 2 cut(s) | 347, 422 |
| Sse9I | AATT | 4 cut(s) | 5, 135, 587, 598 |
| SsiI | CCGC | 6 cut(s) | 149, 195, 271, 327, 357, 626 |
| SspDI | GGCGCC | 1 cut(s) | 221 |
| SspMI | CTAG | 4 cut(s) | 321, 410, 501, 521 |
| StyD4I | CCNGG | 5 cut(s) | 111, 139, 229, 605, 705 |
| StyI | CCWWGG | 1 cut(s) | 456 |
| TaaI | ACNGT | 1 cut(s) | 473 |
| TaqI | TCGA | 1 cut(s) | 310 |
| TasI | AATT | 4 cut(s) | 5, 135, 587, 598 |
| TauI | GCSGC | 3 cut(s) | 197, 330, 629 |
| Tru1I | TTAA | 2 cut(s) | 258, 615 |
| Tru9I | TTAA | 2 cut(s) | 258, 615 |
| TscAI | CASTG | 1 cut(s) | 247 |
| TseFI | GTSAC | 2 cut(s) | 427, 697 |
| TseI | GCWGC | 1 cut(s) | 629 |
| Tsp45I | GTSAC | 2 cut(s) | 427, 697 |
| TspDTI | ATGAA | 2 cut(s) | 562, 633 |
| TspGWI | ACGGA | 5 cut(s) | 133, 196, 322, 477, 499 |
| TspRI | CASTG | 1 cut(s) | 247 |
| VpaK11BI | GGWCC | 1 cut(s) | 398 |
| XapI | RAATTY | 1 cut(s) | 598 |
| XbaI | TCTAGA | 1 cut(s) | 520 |
| XmnI | GAANNNNTTC | 1 cut(s) | 569 |
| XspI | CTAG | 4 cut(s) | 321, 410, 501, 521 |