Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1171 |
| Acc65I | GGTACC | 2 cut(s) | 889, 1822 |
| AccB1I | GGYRCC | 2 cut(s) | 889, 1822 |
| AccBSI | CCGCTC | 3 cut(s) | 441, 1295, 1924 |
| AccI | GTMKAC | 2 cut(s) | 1185, 1599 |
| AccII | CGCG | 7 cut(s) | 144, 179, 426, 1199, 1595, 1682, 1935 |
| AclI | AACGTT | 1 cut(s) | 317 |
| AclWI | GGATC | 6 cut(s) | 168, 453, 670, 1268, 1730, 1760 |
| AcoI | YGGCCR | 4 cut(s) | 376, 421, 1200, 1539 |
| AcsI | RAATTY | 2 cut(s) | 395, 1087 |
| AcuI | CTGAAG | 2 cut(s) | 144, 1848 |
| AfaI | GTAC | 5 cut(s) | 512, 527, 767, 891, 1824 |
| AgsI | TTSAA | 3 cut(s) | 215, 416, 1330 |
| AjnI | CCWGG | 7 cut(s) | 929, 1151, 1276, 1397, 1647, 1743, 1954 |
| AluBI | AGCT | 7 cut(s) | 167, 419, 578, 694, 1631, 1895, 1931 |
| AluI | AGCT | 7 cut(s) | 167, 419, 578, 694, 1631, 1895, 1931 |
| Alw21I | GWGCWC | 4 cut(s) | 375, 480, 1162, 1245 |
| Alw26I | GTCTC | 1 cut(s) | 1148 |
| Alw44I | GTGCAC | 2 cut(s) | 371, 1158 |
| AlwI | GGATC | 6 cut(s) | 168, 453, 670, 1268, 1730, 1760 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 600 |
| ApaLI | GTGCAC | 2 cut(s) | 371, 1158 |
| ApeKI | GCWGC | 2 cut(s) | 346, 1311 |
| ApoI | RAATTY | 2 cut(s) | 395, 1087 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 281, 313, 1178, 1210 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1983 |
| Asp718I | GGTACC | 2 cut(s) | 889, 1822 |
| AspLEI | GCGC | 2 cut(s) | 1462, 1937 |
| AsuC2I | CCSGG | 4 cut(s) | 683, 716, 1527, 1865 |
| AsuHPI | GGTGA | 3 cut(s) | 649, 1351, 1916 |
| AsuNHI | GCTAGC | 1 cut(s) | 1627 |
| AvaII | GGWCC | 4 cut(s) | 69, 560, 1811, 1838 |
| AxyI | CCTNAGG | 1 cut(s) | 611 |
| BaeGI | GKGCMC | 3 cut(s) | 375, 646, 1162 |
| BanI | GGYRCC | 2 cut(s) | 889, 1822 |
| BanII | GRGCYC | 2 cut(s) | 632, 1854 |
| BbsI | GAAGAC | 2 cut(s) | 1350, 1976 |
| Bbv12I | GWGCWC | 4 cut(s) | 375, 480, 1162, 1245 |
| BbvI | GCAGC | 2 cut(s) | 333, 1323 |
| BccI | CCATC | 6 cut(s) | 27, 175, 206, 257, 344, 1031 |
| BceAI | ACGGC | 2 cut(s) | 391, 1299 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 268, 302, 1428, 1462 |
| BciT130I | CCWGG | 7 cut(s) | 931, 1153, 1278, 1399, 1649, 1745, 1956 |
| BcnI | CCSGG | 4 cut(s) | 683, 716, 1527, 1865 |
| BcoDI | GTCTC | 1 cut(s) | 1148 |
| BfaI | CTAG | 6 cut(s) | 66, 164, 245, 575, 773, 1628 |
| BfmI | CTRYAG | 1 cut(s) | 1386 |
| BfoI | RGCGCY | 1 cut(s) | 1463 |
| BfuAI | ACCTGC | 1 cut(s) | 1171 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1298 |
| BisI | GCNGC | 8 cut(s) | 229, 347, 424, 427, 1200, 1293, 1312, 1542 |
| BlsI | GCNGC | 8 cut(s) | 230, 348, 425, 428, 1201, 1294, 1313, 1543 |
| BmcAI | AGTACT | 1 cut(s) | 512 |
| Bme18I | GGWCC | 4 cut(s) | 69, 560, 1811, 1838 |
| BmiI | GGNNCC | 9 cut(s) | 30, 430, 891, 946, 1812, 1813, 1824, 1851, 1863 |
| BmrI | ACTGGG | 3 cut(s) | 181, 216, 963 |
| BmsI | GCATC | 2 cut(s) | 1043, 1960 |
| BmtI | GCTAGC | 1 cut(s) | 1631 |
| BmuI | ACTGGG | 3 cut(s) | 181, 216, 963 |
| BpiI | GAAGAC | 2 cut(s) | 1350, 1976 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1227, 1259 |
| BpmI | CTGGAG | 1 cut(s) | 1938 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1974 |
| BpuEI | CTTGAG | 2 cut(s) | 1450, 1877 |
| BpuMI | CCSGG | 4 cut(s) | 683, 716, 1527, 1865 |
| Bsa29I | ATCGAT | 2 cut(s) | 1051, 1366 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1047 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 911, 941, 943, 973 |
| Bse1I | ACTGG | 9 cut(s) | 176, 222, 493, 518, 562, 703, 917, 958, 1824 |
| Bse21I | CCTNAGG | 1 cut(s) | 611 |
| Bse3DI | GCAATG | 1 cut(s) | 495 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1047 |
| BseBI | CCWGG | 7 cut(s) | 931, 1153, 1278, 1399, 1649, 1745, 1956 |
| BseCI | ATCGAT | 2 cut(s) | 1051, 1366 |
| BseGI | GGATG | 6 cut(s) | 19, 252, 272, 1092, 1657, 1756 |
| BseJI | GATNNNNATC | 1 cut(s) | 1047 |
| BseMI | GCAATG | 1 cut(s) | 495 |
| BseMII | CTCAG | 8 cut(s) | 24, 53, 69, 738, 817, 1159, 1206, 1698 |
| BseNI | ACTGG | 9 cut(s) | 176, 222, 493, 518, 562, 703, 917, 958, 1824 |
| BseRI | GAGGAG | 2 cut(s) | 532, 951 |
| BseSI | GKGCMC | 3 cut(s) | 375, 646, 1162 |
| BseXI | GCAGC | 2 cut(s) | 333, 1323 |
| BsgI | GTGCAG | 1 cut(s) | 520 |
| Bsh1236I | CGCG | 7 cut(s) | 144, 179, 426, 1199, 1595, 1682, 1935 |
| Bsh1285I | CGRYCG | 3 cut(s) | 388, 1051, 1599 |
| BshNI | GGYRCC | 2 cut(s) | 889, 1822 |
| BshVI | ATCGAT | 2 cut(s) | 1051, 1366 |
| BsiEI | CGRYCG | 3 cut(s) | 388, 1051, 1599 |
| BsiHKAI | GWGCWC | 4 cut(s) | 375, 480, 1162, 1245 |
| BsiSI | CCGG | 4 cut(s) | 683, 715, 1527, 1865 |
| BslFI | GGGAC | 3 cut(s) | 188, 1005, 1797 |
| BsmAI | GTCTC | 1 cut(s) | 1148 |
| BsmFI | GGGAC | 3 cut(s) | 188, 1005, 1797 |
| BsmI | GAATGC | 1 cut(s) | 664 |
| Bsp1286I | GDGCHC | 7 cut(s) | 375, 480, 632, 646, 1162, 1245, 1854 |
| Bsp143I | GATC | 7 cut(s) | 160, 458, 675, 1048, 1273, 1735, 1765 |
| Bsp68I | TCGCGA | 1 cut(s) | 144 |
| BspCNI | CTCAG | 8 cut(s) | 23, 52, 68, 739, 816, 1158, 1207, 1699 |
| BspDI | ATCGAT | 2 cut(s) | 1051, 1366 |
| BspFNI | CGCG | 7 cut(s) | 144, 179, 426, 1199, 1595, 1682, 1935 |
| BspLI | GGNNCC | 9 cut(s) | 30, 430, 891, 946, 1812, 1813, 1824, 1851, 1863 |
| BspMAI | CTGCAG | 1 cut(s) | 1390 |
| BspMI | ACCTGC | 1 cut(s) | 1171 |
| BspOI | GCTAGC | 1 cut(s) | 1631 |
| BspPI | GGATC | 6 cut(s) | 168, 453, 670, 1268, 1730, 1760 |
| BspT107I | GGYRCC | 2 cut(s) | 889, 1822 |
| BsrBI | CCGCTC | 3 cut(s) | 441, 1295, 1924 |
| BsrDI | GCAATG | 1 cut(s) | 495 |
| BsrI | ACTGG | 9 cut(s) | 176, 222, 493, 518, 562, 703, 917, 958, 1824 |
| BssMI | GATC | 7 cut(s) | 160, 458, 675, 1048, 1273, 1735, 1765 |
| BssT1I | CCWWGG | 2 cut(s) | 111, 563 |
| Bst2UI | CCWGG | 7 cut(s) | 931, 1153, 1278, 1399, 1649, 1745, 1956 |
| Bst4CI | ACNGT | 4 cut(s) | 641, 1429, 1615, 1717 |
| Bst6I | CTCTTC | 1 cut(s) | 1195 |
| BstDSI | CCRYGG | 3 cut(s) | 424, 1203, 1555 |
| BstEII | GGTNACC | 1 cut(s) | 655 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 650, 1167 |
| BstF5I | GGATG | 6 cut(s) | 19, 252, 272, 1092, 1657, 1756 |
| BstFNI | CGCG | 7 cut(s) | 144, 179, 426, 1199, 1595, 1682, 1935 |
| BstH2I | RGCGCY | 1 cut(s) | 1463 |
| BstHHI | GCGC | 2 cut(s) | 1462, 1937 |
| BstKTI | GATC | 7 cut(s) | 163, 461, 678, 1051, 1276, 1738, 1768 |
| BstMAI | GTCTC | 1 cut(s) | 1148 |
| BstMBI | GATC | 7 cut(s) | 160, 458, 675, 1048, 1273, 1735, 1765 |
| BstMCI | CGRYCG | 3 cut(s) | 388, 1051, 1599 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 234, 370, 575, 1157, 1298, 1311, 1754 |
| BstNI | CCWGG | 7 cut(s) | 931, 1153, 1278, 1399, 1649, 1745, 1956 |
| BstNSI | RCATGY | 1 cut(s) | 1592 |
| BstPI | GGTNACC | 1 cut(s) | 655 |
| BstSFI | CTRYAG | 1 cut(s) | 1386 |
| BstSLI | GKGCMC | 3 cut(s) | 375, 646, 1162 |
| BstUI | CGCG | 7 cut(s) | 144, 179, 426, 1199, 1595, 1682, 1935 |
| BstV1I | GCAGC | 2 cut(s) | 333, 1323 |
| BstV2I | GAAGAC | 2 cut(s) | 1350, 1976 |
| BstX2I | RGATCY | 3 cut(s) | 160, 675, 1273 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 605 |
| BstYI | RGATCY | 3 cut(s) | 160, 675, 1273 |
| Bsu15I | ATCGAT | 2 cut(s) | 1051, 1366 |
| Bsu36I | CCTNAGG | 1 cut(s) | 611 |
| BsuTUI | ATCGAT | 2 cut(s) | 1051, 1366 |
| BtgI | CCRYGG | 3 cut(s) | 424, 1203, 1555 |
| BtgZI | GCGATG | 1 cut(s) | 194 |
| BtsCI | GGATG | 6 cut(s) | 19, 252, 272, 1092, 1657, 1756 |
| BtsI | GCAGTG | 2 cut(s) | 458, 598 |
| BtsIMutI | CAGTG | 8 cut(s) | 169, 229, 458, 555, 598, 710, 951, 1620 |
| BtuMI | TCGCGA | 1 cut(s) | 144 |
| BveI | ACCTGC | 1 cut(s) | 1171 |
| CaiI | CAGNNNCTG | 1 cut(s) | 600 |
| CfoI | GCGC | 2 cut(s) | 1462, 1937 |
| Cfr42I | CCGCGG | 1 cut(s) | 427 |
| ClaI | ATCGAT | 2 cut(s) | 1051, 1366 |
| CseI | GACGC | 1 cut(s) | 185 |
| Csp6I | GTAC | 5 cut(s) | 511, 526, 766, 890, 1823 |
| CviAII | CATG | 4 cut(s) | 661, 965, 1589, 1790 |
| CviQI | GTAC | 5 cut(s) | 511, 526, 766, 890, 1823 |
| DpnI | GATC | 7 cut(s) | 162, 460, 677, 1050, 1275, 1737, 1767 |
| DpnII | GATC | 7 cut(s) | 160, 458, 675, 1048, 1273, 1735, 1765 |
| EaeI | YGGCCR | 4 cut(s) | 376, 421, 1200, 1539 |
| Eam1104I | CTCTTC | 1 cut(s) | 1195 |
| EarI | CTCTTC | 1 cut(s) | 1195 |
| EciI | GGCGGA | 1 cut(s) | 1763 |
| Eco130I | CCWWGG | 2 cut(s) | 111, 563 |
| Eco24I | GRGCYC | 2 cut(s) | 632, 1854 |
| Eco32I | GATATC | 1 cut(s) | 829 |
| Eco47I | GGWCC | 4 cut(s) | 69, 560, 1811, 1838 |
| Eco57I | CTGAAG | 2 cut(s) | 144, 1848 |
| Eco81I | CCTNAGG | 1 cut(s) | 611 |
| Eco91I | GGTNACC | 1 cut(s) | 655 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 650, 1167 |
| EcoO109I | RGGNCCY | 8 cut(s) | 28, 69, 944, 1391, 1415, 1811, 1838, 1861 |
| EcoO65I | GGTNACC | 1 cut(s) | 655 |
| EcoRI | GAATTC | 1 cut(s) | 395 |
| EcoRII | CCWGG | 7 cut(s) | 929, 1151, 1276, 1397, 1647, 1743, 1954 |
| EcoRV | GATATC | 1 cut(s) | 829 |
| EcoT14I | CCWWGG | 2 cut(s) | 111, 563 |
| EcoT22I | ATGCAT | 2 cut(s) | 666, 1590 |
| EcoT38I | GRGCYC | 2 cut(s) | 632, 1854 |
| ErhI | CCWWGG | 2 cut(s) | 111, 563 |
| FaeI | CATG | 4 cut(s) | 664, 968, 1592, 1793 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1884, 1916 |
| FaqI | GGGAC | 3 cut(s) | 188, 1005, 1797 |
| FatI | CATG | 4 cut(s) | 660, 964, 1588, 1789 |
| FauI | CCCGC | 1 cut(s) | 1310 |
| FblI | GTMKAC | 2 cut(s) | 1185, 1599 |
| Fnu4HI | GCNGC | 8 cut(s) | 229, 347, 424, 427, 1200, 1293, 1312, 1542 |
| FokI | GGATG | 6 cut(s) | 6, 239, 259, 1079, 1664, 1763 |
| FriOI | GRGCYC | 2 cut(s) | 632, 1854 |
| Fsp4HI | GCNGC | 8 cut(s) | 229, 347, 424, 427, 1200, 1293, 1312, 1542 |
| FspBI | CTAG | 6 cut(s) | 66, 164, 245, 575, 773, 1628 |
| GlaI | GCGC | 2 cut(s) | 1461, 1936 |
| GluI | GCNGC | 8 cut(s) | 229, 347, 424, 427, 1200, 1293, 1312, 1542 |
| GsuI | CTGGAG | 1 cut(s) | 1938 |
| HaeII | RGCGCY | 1 cut(s) | 1463 |
| HapII | CCGG | 4 cut(s) | 683, 715, 1527, 1865 |
| HgaI | GACGC | 1 cut(s) | 185 |
| HhaI | GCGC | 2 cut(s) | 1462, 1937 |
| Hin1II | CATG | 4 cut(s) | 664, 968, 1592, 1793 |
| Hin6I | GCGC | 2 cut(s) | 1460, 1935 |
| HinP1I | GCGC | 2 cut(s) | 1460, 1935 |
| HincII | GTYRAC | 3 cut(s) | 688, 1186, 1600 |
| HindII | GTYRAC | 3 cut(s) | 688, 1186, 1600 |
| HindIII | AAGCTT | 1 cut(s) | 1893 |
| HinfI | GANTC | 6 cut(s) | 390, 788, 1032, 1187, 1256, 1907 |
| HpaII | CCGG | 4 cut(s) | 683, 715, 1527, 1865 |
| HphI | GGTGA | 3 cut(s) | 649, 1351, 1916 |
| Hpy166II | GTNNAC | 5 cut(s) | 373, 688, 1160, 1186, 1600 |
| Hpy188I | TCNGA | 5 cut(s) | 13, 748, 793, 1549, 1991 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 143, 265, 1670 |
| Hpy8I | GTNNAC | 5 cut(s) | 373, 688, 1160, 1186, 1600 |
| Hpy99I | CGWCG | 2 cut(s) | 1380, 1721 |
| HpyAV | CCTTC | 9 cut(s) | 295, 511, 747, 1114, 1204, 1404, 1406, 1428, 1973 |
| HpyCH4III | ACNGT | 4 cut(s) | 641, 1429, 1615, 1717 |
| HpyCH4IV | ACGT | 1 cut(s) | 317 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 234, 370, 575, 1157, 1298, 1311, 1754 |
| HpySE526I | ACGT | 1 cut(s) | 317 |
| Hsp92II | CATG | 4 cut(s) | 664, 968, 1592, 1793 |
| HspAI | GCGC | 2 cut(s) | 1460, 1935 |
| KflI | GGGWCCC | 1 cut(s) | 1811 |
| KpnI | GGTACC | 2 cut(s) | 893, 1826 |
| KspI | CCGCGG | 1 cut(s) | 427 |
| Kzo9I | GATC | 7 cut(s) | 160, 458, 675, 1048, 1273, 1735, 1765 |
| LmnI | GCTCC | 3 cut(s) | 434, 1849, 1882 |
| Lsp1109I | GCAGC | 2 cut(s) | 333, 1323 |
| LweI | GCATC | 2 cut(s) | 1043, 1960 |
| MaeI | CTAG | 6 cut(s) | 66, 164, 245, 575, 773, 1628 |
| MaeII | ACGT | 1 cut(s) | 317 |
| MaeIII | GTNAC | 5 cut(s) | 34, 655, 1660, 1727, 1945 |
| MalI | GATC | 7 cut(s) | 162, 460, 677, 1050, 1275, 1737, 1767 |
| MbiI | CCGCTC | 3 cut(s) | 441, 1295, 1924 |
| MboI | GATC | 7 cut(s) | 160, 458, 675, 1048, 1273, 1735, 1765 |
| MboII | GAAGA | 6 cut(s) | 137, 948, 1182, 1355, 1976, 1979 |
| MfeI | CAATTG | 2 cut(s) | 232, 884 |
| MflI | RGATCY | 3 cut(s) | 160, 675, 1273 |
| MhlI | GDGCHC | 7 cut(s) | 375, 480, 632, 646, 1162, 1245, 1854 |
| MluCI | AATT | 7 cut(s) | 50, 232, 380, 395, 742, 884, 1087 |
| MlyI | GAGTC | 3 cut(s) | 399, 1041, 1181 |
| MmeI | TCCRAC | 1 cut(s) | 892 |
| Mph1103I | ATGCAT | 2 cut(s) | 666, 1590 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1983 |
| MseI | TTAA | 1 cut(s) | 1082 |
| MslI | CAYNNNNRTG | 1 cut(s) | 903 |
| MspA1I | CMGCKG | 2 cut(s) | 426, 1135 |
| MspI | CCGG | 4 cut(s) | 683, 715, 1527, 1865 |
| MunI | CAATTG | 2 cut(s) | 232, 884 |
| Mva1269I | GAATGC | 1 cut(s) | 664 |
| MvaI | CCWGG | 7 cut(s) | 931, 1153, 1278, 1399, 1649, 1745, 1956 |
| MvnI | CGCG | 7 cut(s) | 144, 179, 426, 1199, 1595, 1682, 1935 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 234, 370, 575, 1157, 1298, 1311, 1754 |
| NciI | CCSGG | 4 cut(s) | 683, 716, 1527, 1865 |
| NdeII | GATC | 7 cut(s) | 160, 458, 675, 1048, 1273, 1735, 1765 |
| NheI | GCTAGC | 1 cut(s) | 1627 |
| NlaIII | CATG | 4 cut(s) | 664, 968, 1592, 1793 |
| NlaIV | GGNNCC | 9 cut(s) | 30, 430, 891, 946, 1812, 1813, 1824, 1851, 1863 |
| NmuCI | GTSAC | 3 cut(s) | 655, 1660, 1727 |
| NruI | TCGCGA | 1 cut(s) | 144 |
| NsiI | ATGCAT | 2 cut(s) | 666, 1590 |
| NspI | RCATGY | 1 cut(s) | 1592 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 381, 390, 1372 |
| PctI | GAATGC | 1 cut(s) | 664 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1983 |
| PfeI | GAWTC | 3 cut(s) | 788, 1256, 1907 |
| PflFI | GACNNNGTC | 3 cut(s) | 67, 389, 1031 |
| PfoI | TCCNGGA | 1 cut(s) | 1525 |
| PkrI | GCNGC | 8 cut(s) | 230, 348, 425, 428, 1201, 1294, 1313, 1543 |
| Ple19I | CGATCG | 1 cut(s) | 1051 |
| PleI | GAGTC | 3 cut(s) | 398, 1040, 1181 |
| PpsI | GAGTC | 3 cut(s) | 398, 1040, 1181 |
| PpuMI | RGGWCCY | 3 cut(s) | 69, 1811, 1838 |
| Psp1406I | AACGTT | 1 cut(s) | 317 |
| Psp5II | RGGWCCY | 3 cut(s) | 69, 1811, 1838 |
| Psp6I | CCWGG | 7 cut(s) | 929, 1151, 1276, 1397, 1647, 1743, 1954 |
| PspEI | GGTNACC | 1 cut(s) | 655 |
| PspGI | CCWGG | 7 cut(s) | 929, 1151, 1276, 1397, 1647, 1743, 1954 |
| PspN4I | GGNNCC | 9 cut(s) | 30, 430, 891, 946, 1812, 1813, 1824, 1851, 1863 |
| PspPPI | RGGWCCY | 3 cut(s) | 69, 1811, 1838 |
| PstI | CTGCAG | 1 cut(s) | 1390 |
| PstNI | CAGNNNCTG | 1 cut(s) | 600 |
| PsuI | RGATCY | 3 cut(s) | 160, 675, 1273 |
| PsyI | GACNNNGTC | 3 cut(s) | 67, 389, 1031 |
| PvuI | CGATCG | 1 cut(s) | 1051 |
| RruI | TCGCGA | 1 cut(s) | 144 |
| RsaI | GTAC | 5 cut(s) | 512, 527, 767, 891, 1824 |
| RsaNI | GTAC | 5 cut(s) | 511, 526, 766, 890, 1823 |
| RseI | CAYNNNNRTG | 1 cut(s) | 903 |
| SacII | CCGCGG | 1 cut(s) | 427 |
| SalI | GTCGAC | 2 cut(s) | 1184, 1598 |
| SaqAI | TTAA | 1 cut(s) | 1082 |
| SatI | GCNGC | 8 cut(s) | 229, 347, 424, 427, 1200, 1293, 1312, 1542 |
| Sau3AI | GATC | 7 cut(s) | 160, 458, 675, 1048, 1273, 1735, 1765 |
| ScaI | AGTACT | 1 cut(s) | 512 |
| SchI | GAGTC | 3 cut(s) | 399, 1041, 1181 |
| SduI | GDGCHC | 7 cut(s) | 375, 480, 632, 646, 1162, 1245, 1854 |
| SfaNI | GCATC | 2 cut(s) | 1043, 1960 |
| SfcI | CTRYAG | 1 cut(s) | 1386 |
| Sfr303I | CCGCGG | 1 cut(s) | 427 |
| SgrBI | CCGCGG | 1 cut(s) | 427 |
| SinI | GGWCC | 4 cut(s) | 69, 560, 1811, 1838 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 903 |
| SmlI | CTYRAG | 2 cut(s) | 1465, 1856 |
| SmoI | CTYRAG | 2 cut(s) | 1465, 1856 |
| Sse9I | AATT | 7 cut(s) | 50, 232, 380, 395, 742, 884, 1087 |
| SspMI | CTAG | 6 cut(s) | 66, 164, 245, 575, 773, 1628 |
| StyI | CCWWGG | 2 cut(s) | 111, 563 |
| TaaI | ACNGT | 4 cut(s) | 641, 1429, 1615, 1717 |
| TaiI | ACGT | 1 cut(s) | 320 |
| TaqII | GACCGA | 1 cut(s) | 402 |
| TasI | AATT | 7 cut(s) | 50, 232, 380, 395, 742, 884, 1087 |
| TatI | WGTACW | 2 cut(s) | 510, 525 |
| TauI | GCSGC | 6 cut(s) | 231, 426, 429, 1202, 1295, 1544 |
| TfiI | GAWTC | 3 cut(s) | 788, 1256, 1907 |
| Tru1I | TTAA | 1 cut(s) | 1082 |
| Tru9I | TTAA | 1 cut(s) | 1082 |
| TscAI | CASTG | 8 cut(s) | 176, 229, 458, 562, 605, 710, 958, 1620 |
| TseFI | GTSAC | 3 cut(s) | 655, 1660, 1727 |
| TseI | GCWGC | 2 cut(s) | 346, 1311 |
| Tsp45I | GTSAC | 3 cut(s) | 655, 1660, 1727 |
| TspDTI | ATGAA | 7 cut(s) | 1026, 1081, 1096, 1365, 1767, 1806, 1874 |
| TspGWI | ACGGA | 1 cut(s) | 1155 |
| TspRI | CASTG | 8 cut(s) | 176, 229, 458, 562, 605, 710, 958, 1620 |
| Tth111I | GACNNNGTC | 3 cut(s) | 67, 389, 1031 |
| VneI | GTGCAC | 2 cut(s) | 371, 1158 |
| VpaK11BI | GGWCC | 4 cut(s) | 69, 560, 1811, 1838 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 650, 1167 |
| XapI | RAATTY | 2 cut(s) | 395, 1087 |
| XceI | RCATGY | 1 cut(s) | 1592 |
| XmiI | GTMKAC | 2 cut(s) | 1185, 1599 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1983 |
| XspI | CTAG | 6 cut(s) | 66, 164, 245, 575, 773, 1628 |
| ZrmI | AGTACT | 1 cut(s) | 512 |
| Zsp2I | ATGCAT | 2 cut(s) | 666, 1590 |