Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 805 |
| Acc36I | ACCTGC | 2 cut(s) | 296, 1759 |
| AccB1I | GGYRCC | 3 cut(s) | 194, 1197, 1730 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2035 |
| AccBSI | CCGCTC | 5 cut(s) | 360, 367, 1560, 2149, 2246 |
| AclWI | GGATC | 7 cut(s) | 291, 832, 845, 1051, 1129, 1868, 2349 |
| AcoI | YGGCCR | 4 cut(s) | 227, 499, 718, 891 |
| AcuI | CTGAAG | 4 cut(s) | 1506, 1512, 1800, 2372 |
| AfaI | GTAC | 3 cut(s) | 685, 973, 2187 |
| AflIII | ACRYGT | 1 cut(s) | 804 |
| AgeI | ACCGGT | 2 cut(s) | 611, 742 |
| AgsI | TTSAA | 5 cut(s) | 101, 1036, 1230, 1898, 2381 |
| AjiI | CACGTC | 1 cut(s) | 1379 |
| AjnI | CCWGG | 9 cut(s) | 172, 594, 977, 1050, 1082, 1219, 1428, 2162, 2203 |
| Alw26I | GTCTC | 4 cut(s) | 245, 791, 2285, 2499 |
| AlwI | GGATC | 7 cut(s) | 291, 832, 845, 1051, 1129, 1868, 2349 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1484 |
| Ama87I | CYCGRG | 2 cut(s) | 1790, 2150 |
| ApaI | GGGCCC | 2 cut(s) | 1256, 1268 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 404, 436, 1280, 1312 |
| AsiGI | ACCGGT | 2 cut(s) | 611, 742 |
| AspLEI | GCGC | 9 cut(s) | 280, 316, 554, 1078, 1244, 1411, 1909, 2515, 2517 |
| AsuC2I | CCSGG | 1 cut(s) | 1263 |
| AsuHPI | GGTGA | 7 cut(s) | 362, 514, 1483, 1604, 1779, 2354, 2440 |
| AsuII | TTCGAA | 1 cut(s) | 2484 |
| AsuNHI | GCTAGC | 2 cut(s) | 290, 1544 |
| AvaI | CYCGRG | 2 cut(s) | 1790, 2150 |
| AvaII | GGWCC | 3 cut(s) | 157, 1564, 2370 |
| BaeGI | GKGCMC | 3 cut(s) | 199, 1256, 1268 |
| BalI | TGGCCA | 2 cut(s) | 229, 501 |
| BamHI | GGATCC | 1 cut(s) | 837 |
| BanI | GGYRCC | 3 cut(s) | 194, 1197, 1730 |
| BanII | GRGCYC | 7 cut(s) | 735, 757, 1256, 1268, 1417, 1839, 1905 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1798, 1830 |
| BauI | CACGAG | 1 cut(s) | 2304 |
| BbsI | GAAGAC | 4 cut(s) | 89, 1500, 1620, 1653 |
| BbvCI | CCTCAGC | 3 cut(s) | 1319, 1959, 2457 |
| BceAI | ACGGC | 5 cut(s) | 720, 733, 849, 1955, 2448 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 61, 95, 1135, 1169, 1747, 1781 |
| BciT130I | CCWGG | 9 cut(s) | 174, 596, 979, 1052, 1084, 1221, 1430, 2164, 2205 |
| BcnI | CCSGG | 1 cut(s) | 1263 |
| BcoDI | GTCTC | 4 cut(s) | 245, 791, 2285, 2499 |
| BfaI | CTAG | 8 cut(s) | 291, 698, 749, 1545, 1991, 2253, 2462, 2556 |
| BfoI | RGCGCY | 1 cut(s) | 555 |
| BfuAI | ACCTGC | 2 cut(s) | 296, 1759 |
| Bme18I | GGWCC | 3 cut(s) | 157, 1564, 2370 |
| BmeT110I | CYCGRG | 2 cut(s) | 1790, 2150 |
| BmgBI | CACGTC | 1 cut(s) | 1379 |
| BmrI | ACTGGG | 1 cut(s) | 2410 |
| BmsI | GCATC | 8 cut(s) | 81, 774, 796, 977, 1338, 1360, 2122, 2309 |
| BmtI | GCTAGC | 2 cut(s) | 294, 1548 |
| BmuI | ACTGGG | 1 cut(s) | 2410 |
| BpiI | GAAGAC | 4 cut(s) | 89, 1500, 1620, 1653 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 424, 456, 1404, 1436, 2316, 2348 |
| BpmI | CTGGAG | 4 cut(s) | 195, 1443, 2187, 2189 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1319, 1959, 2457, 2508 |
| Bpu14I | TTCGAA | 1 cut(s) | 2484 |
| BpuEI | CTTGAG | 4 cut(s) | 1998, 2082, 2232, 2462 |
| BpuMI | CCSGG | 1 cut(s) | 1263 |
| Bsa29I | ATCGAT | 1 cut(s) | 1609 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1023, 1916 |
| BsaI | GGTCTC | 2 cut(s) | 791, 2285 |
| BsaJI | CCNNGG | 7 cut(s) | 531, 1130, 1428, 1580, 1698, 2076, 2424 |
| BsaWI | WCCGGW | 5 cut(s) | 149, 611, 742, 1282, 1933 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 108, 138, 144, 174 |
| Bse118I | RCCGGY | 6 cut(s) | 611, 742, 889, 1405, 1623, 1727 |
| Bse1I | ACTGG | 4 cut(s) | 159, 469, 1176, 2416 |
| Bse3DI | GCAATG | 1 cut(s) | 730 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1023, 1916 |
| BseBI | CCWGG | 9 cut(s) | 174, 596, 979, 1052, 1084, 1221, 1430, 2164, 2205 |
| BseCI | ATCGAT | 1 cut(s) | 1609 |
| BseDI | CCNNGG | 7 cut(s) | 531, 1130, 1428, 1580, 1698, 2076, 2424 |
| BseGI | GGATG | 7 cut(s) | 230, 787, 873, 938, 987, 1375, 2575 |
| BseJI | GATNNNNATC | 2 cut(s) | 1023, 1916 |
| BseMI | GCAATG | 1 cut(s) | 730 |
| BseNI | ACTGG | 4 cut(s) | 159, 469, 1176, 2416 |
| BsePI | GCGCGC | 1 cut(s) | 2513 |
| BseRI | GAGGAG | 3 cut(s) | 1098, 1847, 2190 |
| BseSI | GKGCMC | 3 cut(s) | 199, 1256, 1268 |
| BseX3I | CGGCCG | 2 cut(s) | 718, 891 |
| BseYI | CCCAGC | 6 cut(s) | 189, 537, 1383, 1640, 2048, 2436 |
| BsgI | GTGCAG | 5 cut(s) | 264, 643, 1359, 1787, 1830 |
| Bsh1285I | CGRYCG | 5 cut(s) | 547, 721, 894, 2238, 2244 |
| BshNI | GGYRCC | 3 cut(s) | 194, 1197, 1730 |
| BshTI | ACCGGT | 2 cut(s) | 611, 742 |
| BshVI | ATCGAT | 1 cut(s) | 1609 |
| BsiEI | CGRYCG | 5 cut(s) | 547, 721, 894, 2238, 2244 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1790, 2150 |
| BslFI | GGGAC | 1 cut(s) | 1365 |
| BsmAI | GTCTC | 4 cut(s) | 245, 791, 2285, 2499 |
| BsmFI | GGGAC | 1 cut(s) | 1365 |
| BsmI | GAATGC | 2 cut(s) | 90, 1747 |
| Bso31I | GGTCTC | 2 cut(s) | 791, 2285 |
| BsoBI | CYCGRG | 2 cut(s) | 1790, 2150 |
| Bsp119I | TTCGAA | 1 cut(s) | 2484 |
| Bsp120I | GGGCCC | 2 cut(s) | 1252, 1264 |
| Bsp1286I | GDGCHC | 8 cut(s) | 199, 735, 757, 1256, 1268, 1417, 1839, 1905 |
| Bsp19I | CCATGG | 2 cut(s) | 531, 1580 |
| Bsp68I | TCGCGA | 2 cut(s) | 267, 1449 |
| BspDI | ATCGAT | 1 cut(s) | 1609 |
| BspMI | ACCTGC | 2 cut(s) | 296, 1759 |
| BspOI | GCTAGC | 2 cut(s) | 294, 1548 |
| BspPI | GGATC | 7 cut(s) | 291, 832, 845, 1051, 1129, 1868, 2349 |
| BspT104I | TTCGAA | 1 cut(s) | 2484 |
| BspT107I | GGYRCC | 3 cut(s) | 194, 1197, 1730 |
| BspTNI | GGTCTC | 2 cut(s) | 791, 2285 |
| BsrBI | CCGCTC | 5 cut(s) | 360, 367, 1560, 2149, 2246 |
| BsrDI | GCAATG | 1 cut(s) | 730 |
| BsrFI | RCCGGY | 6 cut(s) | 611, 742, 889, 1405, 1623, 1727 |
| BsrI | ACTGG | 4 cut(s) | 159, 469, 1176, 2416 |
| BssAI | RCCGGY | 6 cut(s) | 611, 742, 889, 1405, 1623, 1727 |
| BssECI | CCNNGG | 7 cut(s) | 531, 1130, 1428, 1580, 1698, 2076, 2424 |
| BssHII | GCGCGC | 1 cut(s) | 2513 |
| BssSI | CACGAG | 1 cut(s) | 2304 |
| BssT1I | CCWWGG | 2 cut(s) | 531, 1580 |
| Bst2BI | CACGAG | 1 cut(s) | 2304 |
| Bst2UI | CCWGG | 9 cut(s) | 174, 596, 979, 1052, 1084, 1221, 1430, 2164, 2205 |
| Bst4CI | ACNGT | 4 cut(s) | 350, 545, 1528, 1735 |
| Bst6I | CTCTTC | 6 cut(s) | 33, 670, 1313, 1395, 1504, 1657 |
| BstBI | TTCGAA | 1 cut(s) | 2484 |
| BstDSI | CCRYGG | 5 cut(s) | 531, 1580, 1698, 2076, 2424 |
| BstF5I | GGATG | 7 cut(s) | 230, 787, 873, 938, 987, 1375, 2575 |
| BstH2I | RGCGCY | 1 cut(s) | 555 |
| BstHHI | GCGC | 9 cut(s) | 280, 316, 554, 1078, 1244, 1411, 1909, 2515, 2517 |
| BstMAI | GTCTC | 4 cut(s) | 245, 791, 2285, 2499 |
| BstMCI | CGRYCG | 5 cut(s) | 547, 721, 894, 2238, 2244 |
| BstNI | CCWGG | 9 cut(s) | 174, 596, 979, 1052, 1084, 1221, 1430, 2164, 2205 |
| BstNSI | RCATGY | 3 cut(s) | 769, 808, 1640 |
| BstSLI | GKGCMC | 3 cut(s) | 199, 1256, 1268 |
| BstV2I | GAAGAC | 4 cut(s) | 89, 1500, 1620, 1653 |
| BstX2I | RGATCY | 3 cut(s) | 283, 837, 2341 |
| BstYI | RGATCY | 3 cut(s) | 283, 837, 2341 |
| BstZI | CGGCCG | 2 cut(s) | 718, 891 |
| Bsu15I | ATCGAT | 1 cut(s) | 1609 |
| BsuTUI | ATCGAT | 1 cut(s) | 1609 |
| BtgI | CCRYGG | 5 cut(s) | 531, 1580, 1698, 2076, 2424 |
| BtgZI | GCGATG | 2 cut(s) | 589, 1825 |
| BtrI | CACGTC | 1 cut(s) | 1379 |
| BtsCI | GGATG | 7 cut(s) | 230, 787, 873, 938, 987, 1375, 2575 |
| BtsIMutI | CAGTG | 1 cut(s) | 462 |
| BtuMI | TCGCGA | 2 cut(s) | 267, 1449 |
| BveI | ACCTGC | 2 cut(s) | 296, 1759 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1484 |
| CfoI | GCGC | 9 cut(s) | 280, 316, 554, 1078, 1244, 1411, 1909, 2515, 2517 |
| Cfr10I | RCCGGY | 6 cut(s) | 611, 742, 889, 1405, 1623, 1727 |
| Cfr42I | CCGCGG | 2 cut(s) | 2079, 2427 |
| ClaI | ATCGAT | 1 cut(s) | 1609 |
| CseI | GACGC | 2 cut(s) | 2135, 2561 |
| Csp6I | GTAC | 3 cut(s) | 684, 972, 2186 |
| CspAI | ACCGGT | 2 cut(s) | 611, 742 |
| CviAII | CATG | 7 cut(s) | 497, 532, 766, 805, 1581, 1637, 2594 |
| CviQI | GTAC | 3 cut(s) | 684, 972, 2186 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 805 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 805 |
| EaeI | YGGCCR | 4 cut(s) | 227, 499, 718, 891 |
| EagI | CGGCCG | 2 cut(s) | 718, 891 |
| Eam1104I | CTCTTC | 6 cut(s) | 33, 670, 1313, 1395, 1504, 1657 |
| EarI | CTCTTC | 6 cut(s) | 33, 670, 1313, 1395, 1504, 1657 |
| EciI | GGCGGA | 2 cut(s) | 851, 1081 |
| EclXI | CGGCCG | 2 cut(s) | 718, 891 |
| Eco130I | CCWWGG | 2 cut(s) | 531, 1580 |
| Eco24I | GRGCYC | 7 cut(s) | 735, 757, 1256, 1268, 1417, 1839, 1905 |
| Eco31I | GGTCTC | 2 cut(s) | 791, 2285 |
| Eco32I | GATATC | 2 cut(s) | 451, 1914 |
| Eco47I | GGWCC | 3 cut(s) | 157, 1564, 2370 |
| Eco52I | CGGCCG | 2 cut(s) | 718, 891 |
| Eco57I | CTGAAG | 4 cut(s) | 1506, 1512, 1800, 2372 |
| Eco88I | CYCGRG | 2 cut(s) | 1790, 2150 |
| EcoRII | CCWGG | 9 cut(s) | 172, 594, 977, 1050, 1082, 1219, 1428, 2162, 2203 |
| EcoRV | GATATC | 2 cut(s) | 451, 1914 |
| EcoT14I | CCWWGG | 2 cut(s) | 531, 1580 |
| EcoT22I | ATGCAT | 1 cut(s) | 789 |
| EcoT38I | GRGCYC | 7 cut(s) | 735, 757, 1256, 1268, 1417, 1839, 1905 |
| ErhI | CCWWGG | 2 cut(s) | 531, 1580 |
| FaeI | CATG | 7 cut(s) | 500, 535, 769, 808, 1584, 1640, 2597 |
| FaqI | GGGAC | 1 cut(s) | 1365 |
| FatI | CATG | 7 cut(s) | 496, 531, 765, 804, 1580, 1636, 2593 |
| FauI | CCCGC | 9 cut(s) | 267, 273, 579, 885, 1104, 1180, 1431, 1912, 2154 |
| FokI | GGATG | 7 cut(s) | 217, 774, 860, 925, 994, 1382, 2582 |
| FriOI | GRGCYC | 7 cut(s) | 735, 757, 1256, 1268, 1417, 1839, 1905 |
| FspBI | CTAG | 8 cut(s) | 291, 698, 749, 1545, 1991, 2253, 2462, 2556 |
| GlaI | GCGC | 9 cut(s) | 279, 315, 553, 1077, 1243, 1410, 1908, 2514, 2516 |
| GsaI | CCCAGC | 6 cut(s) | 193, 541, 1387, 1644, 2052, 2440 |
| GsuI | CTGGAG | 4 cut(s) | 195, 1443, 2187, 2189 |
| HaeII | RGCGCY | 1 cut(s) | 555 |
| HgaI | GACGC | 2 cut(s) | 2135, 2561 |
| HhaI | GCGC | 9 cut(s) | 280, 316, 554, 1078, 1244, 1411, 1909, 2515, 2517 |
| Hin1II | CATG | 7 cut(s) | 500, 535, 769, 808, 1584, 1640, 2597 |
| Hin6I | GCGC | 9 cut(s) | 278, 314, 552, 1076, 1242, 1409, 1907, 2513, 2515 |
| HinP1I | GCGC | 9 cut(s) | 278, 314, 552, 1076, 1242, 1409, 1907, 2513, 2515 |
| HincII | GTYRAC | 2 cut(s) | 517, 2421 |
| HindII | GTYRAC | 2 cut(s) | 517, 2421 |
| HphI | GGTGA | 7 cut(s) | 362, 514, 1483, 1604, 1779, 2354, 2440 |
| Hpy166II | GTNNAC | 4 cut(s) | 517, 1595, 1787, 2421 |
| Hpy8I | GTNNAC | 4 cut(s) | 517, 1595, 1787, 2421 |
| Hpy99I | CGWCG | 4 cut(s) | 706, 784, 1292, 1532 |
| HpyCH4III | ACNGT | 4 cut(s) | 350, 545, 1528, 1735 |
| HpyCH4IV | ACGT | 1 cut(s) | 1378 |
| HpySE526I | ACGT | 1 cut(s) | 1378 |
| Hsp92II | CATG | 7 cut(s) | 500, 535, 769, 808, 1584, 1640, 2597 |
| HspAI | GCGC | 9 cut(s) | 278, 314, 552, 1076, 1242, 1409, 1907, 2513, 2515 |
| KroI | GCCGGC | 1 cut(s) | 1727 |
| KroNI | GCCGGC | 1 cut(s) | 1729 |
| KspI | CCGCGG | 2 cut(s) | 2079, 2427 |
| LweI | GCATC | 8 cut(s) | 81, 774, 796, 977, 1338, 1360, 2122, 2309 |
| MaeI | CTAG | 8 cut(s) | 291, 698, 749, 1545, 1991, 2253, 2462, 2556 |
| MaeII | ACGT | 1 cut(s) | 1378 |
| MaeIII | GTNAC | 6 cut(s) | 350, 866, 1300, 1936, 2306, 2428 |
| MbiI | CCGCTC | 5 cut(s) | 360, 367, 1560, 2149, 2246 |
| MfeI | CAATTG | 2 cut(s) | 1192, 2396 |
| MflI | RGATCY | 3 cut(s) | 283, 837, 2341 |
| MhlI | GDGCHC | 8 cut(s) | 199, 735, 757, 1256, 1268, 1417, 1839, 1905 |
| MlsI | TGGCCA | 2 cut(s) | 229, 501 |
| MluCI | AATT | 8 cut(s) | 223, 503, 1004, 1100, 1192, 1443, 2349, 2396 |
| MluNI | TGGCCA | 2 cut(s) | 229, 501 |
| MlyI | GAGTC | 6 cut(s) | 163, 685, 1210, 1490, 1643, 2303 |
| MmeI | TCCRAC | 4 cut(s) | 162, 426, 1776, 2551 |
| Mox20I | TGGCCA | 2 cut(s) | 229, 501 |
| Mph1103I | ATGCAT | 1 cut(s) | 789 |
| MroNI | GCCGGC | 1 cut(s) | 1727 |
| MscI | TGGCCA | 2 cut(s) | 229, 501 |
| MseI | TTAA | 2 cut(s) | 44, 2588 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1346 |
| Msp20I | TGGCCA | 2 cut(s) | 229, 501 |
| MspA1I | CMGCKG | 4 cut(s) | 248, 1535, 2078, 2426 |
| MunI | CAATTG | 2 cut(s) | 1192, 2396 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 1747 |
| MvaI | CCWGG | 9 cut(s) | 174, 596, 979, 1052, 1084, 1221, 1430, 2164, 2205 |
| NaeI | GCCGGC | 1 cut(s) | 1729 |
| NciI | CCSGG | 1 cut(s) | 1263 |
| NcoI | CCATGG | 2 cut(s) | 531, 1580 |
| NgoMIV | GCCGGC | 1 cut(s) | 1727 |
| NheI | GCTAGC | 2 cut(s) | 290, 1544 |
| NlaIII | CATG | 7 cut(s) | 500, 535, 769, 808, 1584, 1640, 2597 |
| NmeAIII | GCCGAG | 1 cut(s) | 1155 |
| NmuCI | GTSAC | 5 cut(s) | 350, 866, 1936, 2306, 2428 |
| NruI | TCGCGA | 2 cut(s) | 267, 1449 |
| NsiI | ATGCAT | 1 cut(s) | 789 |
| NspI | RCATGY | 3 cut(s) | 769, 808, 1640 |
| NspV | TTCGAA | 1 cut(s) | 2484 |
| PaeI | GCATGC | 1 cut(s) | 1640 |
| PaeR7I | CTCGAG | 1 cut(s) | 2150 |
| PauI | GCGCGC | 1 cut(s) | 2513 |
| PciI | ACATGT | 1 cut(s) | 804 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1446 |
| PctI | GAATGC | 2 cut(s) | 90, 1747 |
| PdiI | GCCGGC | 1 cut(s) | 1729 |
| PfeI | GAWTC | 6 cut(s) | 509, 618, 1019, 1703, 1759, 2359 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2035 |
| PfoI | TCCNGGA | 4 cut(s) | 172, 977, 1219, 2203 |
| PinAI | ACCGGT | 2 cut(s) | 611, 742 |
| PleI | GAGTC | 6 cut(s) | 163, 685, 1210, 1490, 1643, 2303 |
| PpsI | GAGTC | 6 cut(s) | 163, 685, 1210, 1490, 1643, 2303 |
| PscI | ACATGT | 1 cut(s) | 804 |
| Psp6I | CCWGG | 9 cut(s) | 172, 594, 977, 1050, 1082, 1219, 1428, 2162, 2203 |
| PspFI | CCCAGC | 6 cut(s) | 189, 537, 1383, 1640, 2048, 2436 |
| PspGI | CCWGG | 9 cut(s) | 172, 594, 977, 1050, 1082, 1219, 1428, 2162, 2203 |
| PspOMI | GGGCCC | 2 cut(s) | 1252, 1264 |
| PspXI | VCTCGAGB | 1 cut(s) | 2150 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1484 |
| PsuI | RGATCY | 3 cut(s) | 283, 837, 2341 |
| PteI | GCGCGC | 1 cut(s) | 2513 |
| PvuII | CAGCTG | 1 cut(s) | 1535 |
| RruI | TCGCGA | 2 cut(s) | 267, 1449 |
| RsaI | GTAC | 3 cut(s) | 685, 973, 2187 |
| RsaNI | GTAC | 3 cut(s) | 684, 972, 2186 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1346 |
| SacII | CCGCGG | 2 cut(s) | 2079, 2427 |
| SaqAI | TTAA | 2 cut(s) | 44, 2588 |
| SchI | GAGTC | 6 cut(s) | 163, 685, 1210, 1490, 1643, 2303 |
| SduI | GDGCHC | 8 cut(s) | 199, 735, 757, 1256, 1268, 1417, 1839, 1905 |
| SfaNI | GCATC | 8 cut(s) | 81, 774, 796, 977, 1338, 1360, 2122, 2309 |
| Sfr274I | CTCGAG | 1 cut(s) | 2150 |
| Sfr303I | CCGCGG | 2 cut(s) | 2079, 2427 |
| SfuI | TTCGAA | 1 cut(s) | 2484 |
| SgrBI | CCGCGG | 2 cut(s) | 2079, 2427 |
| SinI | GGWCC | 3 cut(s) | 157, 1564, 2370 |
| SlaI | CTCGAG | 1 cut(s) | 2150 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1346 |
| SmlI | CTYRAG | 5 cut(s) | 2013, 2097, 2150, 2247, 2441 |
| SmoI | CTYRAG | 5 cut(s) | 2013, 2097, 2150, 2247, 2441 |
| SphI | GCATGC | 1 cut(s) | 1640 |
| Sse9I | AATT | 8 cut(s) | 223, 503, 1004, 1100, 1192, 1443, 2349, 2396 |
| SspI | AATATT | 1 cut(s) | 635 |
| SspMI | CTAG | 8 cut(s) | 291, 698, 749, 1545, 1991, 2253, 2462, 2556 |
| StyI | CCWWGG | 2 cut(s) | 531, 1580 |
| TaaI | ACNGT | 4 cut(s) | 350, 545, 1528, 1735 |
| TaiI | ACGT | 1 cut(s) | 1381 |
| TaqII | GACCGA | 1 cut(s) | 1171 |
| TasI | AATT | 8 cut(s) | 223, 503, 1004, 1100, 1192, 1443, 2349, 2396 |
| TauI | GCSGC | 8 cut(s) | 367, 723, 924, 1129, 1560, 2078, 2081, 2117 |
| TfiI | GAWTC | 6 cut(s) | 509, 618, 1019, 1703, 1759, 2359 |
| Tru1I | TTAA | 2 cut(s) | 44, 2588 |
| Tru9I | TTAA | 2 cut(s) | 44, 2588 |
| TscAI | CASTG | 1 cut(s) | 469 |
| TseFI | GTSAC | 5 cut(s) | 350, 866, 1936, 2306, 2428 |
| Tsp45I | GTSAC | 5 cut(s) | 350, 866, 1936, 2306, 2428 |
| TspDTI | ATGAA | 4 cut(s) | 927, 1607, 2232, 2586 |
| TspGWI | ACGGA | 1 cut(s) | 1715 |
| TspRI | CASTG | 1 cut(s) | 469 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2035 |
| VpaK11BI | GGWCC | 3 cut(s) | 157, 1564, 2370 |
| XceI | RCATGY | 3 cut(s) | 769, 808, 1640 |
| XhoI | CTCGAG | 1 cut(s) | 2150 |
| XspI | CTAG | 8 cut(s) | 291, 698, 749, 1545, 1991, 2253, 2462, 2556 |
| Zsp2I | ATGCAT | 1 cut(s) | 789 |