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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 655 |
| Acc65I | GGTACC | 1 cut(s) | 697 |
| AccB1I | GGYRCC | 2 cut(s) | 697, 712 |
| AccII | CGCG | 6 cut(s) | 159, 195, 233, 525, 902, 1034 |
| AciI | CCGC | 5 cut(s) | 102, 231, 431, 464, 523 |
| AclWI | GGATC | 4 cut(s) | 552, 758, 771, 1071 |
| AcoI | YGGCCR | 2 cut(s) | 255, 1092 |
| AcuI | CTGAAG | 3 cut(s) | 167, 321, 1052 |
| AfaI | GTAC | 2 cut(s) | 699, 923 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 396, 451, 565, 835, 1060 |
| AflII | CTTAAG | 1 cut(s) | 212 |
| AflIII | ACRYGT | 1 cut(s) | 550 |
| AgeI | ACCGGT | 1 cut(s) | 709 |
| AgsI | TTSAA | 5 cut(s) | 308, 539, 683, 792, 821 |
| AjnI | CCWGG | 9 cut(s) | 435, 639, 832, 873, 895, 932, 942, 1094, 1104 |
| AluBI | AGCT | 2 cut(s) | 217, 284 |
| AluI | AGCT | 2 cut(s) | 217, 284 |
| Alw26I | GTCTC | 3 cut(s) | 45, 51, 621 |
| AlwI | GGATC | 4 cut(s) | 552, 758, 771, 1071 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 728 |
| Ama87I | CYCGRG | 2 cut(s) | 172, 485 |
| AoxI | GGCC | 8 cut(s) | 255, 859, 877, 930, 957, 1005, 1071, 1092 |
| ApeKI | GCWGC | 3 cut(s) | 347, 350, 581 |
| AscI | GGCGCGCC | 1 cut(s) | 900 |
| AsiGI | ACCGGT | 1 cut(s) | 709 |
| Asp718I | GGTACC | 1 cut(s) | 697 |
| AspLEI | GCGC | 7 cut(s) | 159, 161, 195, 377, 784, 902, 904 |
| AspS9I | GGNCC | 7 cut(s) | 826, 877, 930, 958, 1005, 1050, 1072 |
| AsuHPI | GGTGA | 3 cut(s) | 451, 522, 1010 |
| AvaI | CYCGRG | 2 cut(s) | 172, 485 |
| AvaII | GGWCC | 2 cut(s) | 826, 1050 |
| AxyI | CCTNAGG | 1 cut(s) | 744 |
| BalI | TGGCCA | 1 cut(s) | 1094 |
| BamHI | GGATCC | 1 cut(s) | 763 |
| BanI | GGYRCC | 2 cut(s) | 697, 712 |
| BanII | GRGCYC | 2 cut(s) | 201, 239 |
| BbsI | GAAGAC | 1 cut(s) | 315 |
| BbvI | GCAGC | 3 cut(s) | 334, 337, 568 |
| BccI | CCATC | 3 cut(s) | 94, 614, 1084 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 575, 609 |
| BciT130I | CCWGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| BciVI | GTATCC | 1 cut(s) | 116 |
| BclI | TGATCA | 1 cut(s) | 21 |
| BcoDI | GTCTC | 3 cut(s) | 45, 51, 621 |
| BfaI | CTAG | 4 cut(s) | 797, 852, 909, 1118 |
| BfmI | CTRYAG | 1 cut(s) | 285 |
| BfrI | CTTAAG | 1 cut(s) | 212 |
| BfuAI | ACCTGC | 1 cut(s) | 655 |
| BfuI | GTATCC | 1 cut(s) | 116 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 876 |
| BisI | GCNGC | 4 cut(s) | 348, 351, 431, 582 |
| BlsI | GCNGC | 4 cut(s) | 349, 352, 432, 583 |
| BmcAI | AGTACT | 1 cut(s) | 923 |
| Bme1390I | CCNGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| Bme18I | GGWCC | 2 cut(s) | 826, 1050 |
| BmeT110I | CYCGRG | 2 cut(s) | 172, 485 |
| BmgT120I | GGNCC | 7 cut(s) | 826, 877, 930, 958, 1005, 1050, 1072 |
| BmrFI | CCNGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| BmsI | GCATC | 2 cut(s) | 505, 838 |
| BpiI | GAAGAC | 1 cut(s) | 315 |
| BpmI | CTGGAG | 1 cut(s) | 857 |
| BpuEI | CTTGAG | 1 cut(s) | 946 |
| BsaBI | GATNNNNATC | 1 cut(s) | 20 |
| BsaJI | CCNNGG | 8 cut(s) | 291, 435, 585, 833, 874, 895, 942, 1104 |
| BsaWI | WCCGGW | 2 cut(s) | 709, 1047 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 502, 532 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 396, 451, 565, 835, 1060 |
| Bse118I | RCCGGY | 1 cut(s) | 709 |
| Bse1I | ACTGG | 3 cut(s) | 261, 467, 621 |
| Bse21I | CCTNAGG | 1 cut(s) | 744 |
| Bse8I | GATNNNNATC | 1 cut(s) | 20 |
| BseBI | CCWGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| BseDI | CCNNGG | 8 cut(s) | 291, 435, 585, 833, 874, 895, 942, 1104 |
| BseGI | GGATG | 2 cut(s) | 72, 625 |
| BseJI | GATNNNNATC | 1 cut(s) | 20 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 396, 451, 565, 835, 1060 |
| BseMII | CTCAG | 1 cut(s) | 735 |
| BseNI | ACTGG | 3 cut(s) | 261, 467, 621 |
| BsePI | GCGCGC | 2 cut(s) | 157, 900 |
| BseXI | GCAGC | 3 cut(s) | 334, 337, 568 |
| Bsh1236I | CGCG | 6 cut(s) | 159, 195, 233, 525, 902, 1034 |
| BshFI | GGCC | 8 cut(s) | 257, 861, 879, 932, 959, 1007, 1073, 1094 |
| BshNI | GGYRCC | 2 cut(s) | 697, 712 |
| BshTI | ACCGGT | 1 cut(s) | 709 |
| BsiHKCI | CYCGRG | 2 cut(s) | 172, 485 |
| BsiSI | CCGG | 3 cut(s) | 254, 710, 1048 |
| BslFI | GGGAC | 2 cut(s) | 812, 1036 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 396, 451, 565, 835, 1060 |
| BsmAI | GTCTC | 3 cut(s) | 45, 51, 621 |
| BsmFI | GGGAC | 2 cut(s) | 812, 1036 |
| BsnI | GGCC | 8 cut(s) | 257, 861, 879, 932, 959, 1007, 1073, 1094 |
| BsoBI | CYCGRG | 2 cut(s) | 172, 485 |
| Bsp1286I | GDGCHC | 2 cut(s) | 201, 239 |
| Bsp143I | GATC | 6 cut(s) | 5, 21, 544, 763, 1000, 1063 |
| Bsp68I | TCGCGA | 1 cut(s) | 1034 |
| BspACI | CCGC | 5 cut(s) | 102, 231, 431, 464, 523 |
| BspANI | GGCC | 8 cut(s) | 257, 861, 879, 932, 959, 1007, 1073, 1094 |
| BspCNI | CTCAG | 1 cut(s) | 736 |
| BspFNI | CGCG | 6 cut(s) | 159, 195, 233, 525, 902, 1034 |
| BspHI | TCATGA | 1 cut(s) | 703 |
| BspMI | ACCTGC | 1 cut(s) | 655 |
| BspPI | GGATC | 4 cut(s) | 552, 758, 771, 1071 |
| BspT107I | GGYRCC | 2 cut(s) | 697, 712 |
| BspTI | CTTAAG | 1 cut(s) | 212 |
| BsrFI | RCCGGY | 1 cut(s) | 709 |
| BsrI | ACTGG | 3 cut(s) | 261, 467, 621 |
| BssAI | RCCGGY | 1 cut(s) | 709 |
| BssECI | CCNNGG | 8 cut(s) | 291, 435, 585, 833, 874, 895, 942, 1104 |
| BssHII | GCGCGC | 2 cut(s) | 157, 900 |
| BssMI | GATC | 6 cut(s) | 5, 21, 544, 763, 1000, 1063 |
| Bst2UI | CCWGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| Bst4CI | ACNGT | 2 cut(s) | 52, 1087 |
| Bst6I | CTCTTC | 3 cut(s) | 82, 319, 534 |
| BstAFI | CTTAAG | 1 cut(s) | 212 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 515, 581 |
| BstDEI | CTNAG | 2 cut(s) | 744, 916 |
| BstDSI | CCRYGG | 1 cut(s) | 291 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 563 |
| BstF5I | GGATG | 2 cut(s) | 72, 625 |
| BstFNI | CGCG | 6 cut(s) | 159, 195, 233, 525, 902, 1034 |
| BstHHI | GCGC | 7 cut(s) | 159, 161, 195, 377, 784, 902, 904 |
| BstKTI | GATC | 6 cut(s) | 8, 24, 547, 766, 1003, 1066 |
| BstMAI | GTCTC | 3 cut(s) | 45, 51, 621 |
| BstMBI | GATC | 6 cut(s) | 5, 21, 544, 763, 1000, 1063 |
| BstNI | CCWGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| BstNSI | RCATGY | 3 cut(s) | 102, 554, 817 |
| BstSCI | CCNGG | 9 cut(s) | 435, 639, 832, 873, 895, 932, 942, 1094, 1104 |
| BstSFI | CTRYAG | 1 cut(s) | 285 |
| BstUI | CGCG | 6 cut(s) | 159, 195, 233, 525, 902, 1034 |
| BstV1I | GCAGC | 3 cut(s) | 334, 337, 568 |
| BstV2I | GAAGAC | 1 cut(s) | 315 |
| BstX2I | RGATCY | 2 cut(s) | 763, 1063 |
| BstYI | RGATCY | 2 cut(s) | 763, 1063 |
| Bsu36I | CCTNAGG | 1 cut(s) | 744 |
| BsuI | GTATCC | 1 cut(s) | 116 |
| BsuRI | GGCC | 8 cut(s) | 257, 861, 879, 932, 959, 1007, 1073, 1094 |
| BtgI | CCRYGG | 1 cut(s) | 291 |
| BtsCI | GGATG | 2 cut(s) | 72, 625 |
| BtuMI | TCGCGA | 1 cut(s) | 1034 |
| BveI | ACCTGC | 1 cut(s) | 655 |
| CaiI | CAGNNNCTG | 1 cut(s) | 728 |
| CciI | TCATGA | 1 cut(s) | 703 |
| CfoI | GCGC | 7 cut(s) | 159, 161, 195, 377, 784, 902, 904 |
| Cfr10I | RCCGGY | 1 cut(s) | 709 |
| Cfr13I | GGNCC | 7 cut(s) | 826, 877, 930, 958, 1005, 1050, 1072 |
| CseI | GACGC | 1 cut(s) | 1036 |
| Csp6I | GTAC | 2 cut(s) | 698, 922 |
| CspAI | ACCGGT | 1 cut(s) | 709 |
| CviAII | CATG | 7 cut(s) | 99, 451, 551, 656, 665, 704, 814 |
| CviQI | GTAC | 2 cut(s) | 698, 922 |
| DdeI | CTNAG | 2 cut(s) | 744, 916 |
| DpnI | GATC | 6 cut(s) | 7, 23, 546, 765, 1002, 1065 |
| DpnII | GATC | 6 cut(s) | 5, 21, 544, 763, 1000, 1063 |
| EaeI | YGGCCR | 2 cut(s) | 255, 1092 |
| Eam1104I | CTCTTC | 3 cut(s) | 82, 319, 534 |
| EarI | CTCTTC | 3 cut(s) | 82, 319, 534 |
| Eco147I | AGGCCT | 1 cut(s) | 861 |
| Eco24I | GRGCYC | 2 cut(s) | 201, 239 |
| Eco47I | GGWCC | 2 cut(s) | 826, 1050 |
| Eco57I | CTGAAG | 3 cut(s) | 167, 321, 1052 |
| Eco81I | CCTNAGG | 1 cut(s) | 744 |
| Eco88I | CYCGRG | 2 cut(s) | 172, 485 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 563 |
| EcoO109I | RGGNCCY | 2 cut(s) | 877, 958 |
| EcoRII | CCWGG | 9 cut(s) | 435, 639, 832, 873, 895, 932, 942, 1094, 1104 |
| EcoT38I | GRGCYC | 2 cut(s) | 201, 239 |
| FaeI | CATG | 7 cut(s) | 102, 454, 554, 659, 668, 707, 817 |
| FaqI | GGGAC | 2 cut(s) | 812, 1036 |
| FatI | CATG | 7 cut(s) | 98, 450, 550, 655, 664, 703, 813 |
| FauI | CCCGC | 1 cut(s) | 530 |
| FbaI | TGATCA | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 4 cut(s) | 348, 351, 431, 582 |
| FokI | GGATG | 2 cut(s) | 79, 632 |
| FriOI | GRGCYC | 2 cut(s) | 201, 239 |
| Fsp4HI | GCNGC | 4 cut(s) | 348, 351, 431, 582 |
| FspBI | CTAG | 4 cut(s) | 797, 852, 909, 1118 |
| GlaI | GCGC | 7 cut(s) | 158, 160, 194, 376, 783, 901, 903 |
| GluI | GCNGC | 4 cut(s) | 348, 351, 431, 582 |
| GsuI | CTGGAG | 1 cut(s) | 857 |
| HaeIII | GGCC | 8 cut(s) | 257, 861, 879, 932, 959, 1007, 1073, 1094 |
| HapII | CCGG | 3 cut(s) | 254, 710, 1048 |
| HgaI | GACGC | 1 cut(s) | 1036 |
| HhaI | GCGC | 7 cut(s) | 159, 161, 195, 377, 784, 902, 904 |
| Hin1II | CATG | 7 cut(s) | 102, 454, 554, 659, 668, 707, 817 |
| Hin6I | GCGC | 7 cut(s) | 157, 159, 193, 375, 782, 900, 902 |
| HinP1I | GCGC | 7 cut(s) | 157, 159, 193, 375, 782, 900, 902 |
| HinfI | GANTC | 6 cut(s) | 247, 311, 527, 912, 989, 1057 |
| HpaII | CCGG | 3 cut(s) | 254, 710, 1048 |
| HphI | GGTGA | 3 cut(s) | 451, 522, 1010 |
| Hpy166II | GTNNAC | 1 cut(s) | 442 |
| Hpy188I | TCNGA | 2 cut(s) | 322, 972 |
| Hpy188III | TCNNGA | 9 cut(s) | 423, 485, 487, 680, 704, 743, 792, 1033, 1061 |
| Hpy8I | GTNNAC | 1 cut(s) | 442 |
| Hpy99I | CGWCG | 1 cut(s) | 614 |
| HpyAV | CCTTC | 1 cut(s) | 798 |
| HpyCH4III | ACNGT | 2 cut(s) | 52, 1087 |
| HpyCH4V | TGCA | 2 cut(s) | 363, 369 |
| HpyF3I | CTNAG | 2 cut(s) | 744, 916 |
| Hsp92II | CATG | 7 cut(s) | 102, 454, 554, 659, 668, 707, 817 |
| HspAI | GCGC | 7 cut(s) | 157, 159, 193, 375, 782, 900, 902 |
| KpnI | GGTACC | 1 cut(s) | 701 |
| Ksp22I | TGATCA | 1 cut(s) | 21 |
| Kzo9I | GATC | 6 cut(s) | 5, 21, 544, 763, 1000, 1063 |
| LmnI | GCTCC | 4 cut(s) | 295, 454, 523, 754 |
| Lsp1109I | GCAGC | 3 cut(s) | 334, 337, 568 |
| LweI | GCATC | 2 cut(s) | 505, 838 |
| MaeI | CTAG | 4 cut(s) | 797, 852, 909, 1118 |
| MaeIII | GTNAC | 1 cut(s) | 528 |
| MalI | GATC | 6 cut(s) | 7, 23, 546, 765, 1002, 1065 |
| MboI | GATC | 6 cut(s) | 5, 21, 544, 763, 1000, 1063 |
| MfeI | CAATTG | 1 cut(s) | 576 |
| MflI | RGATCY | 2 cut(s) | 763, 1063 |
| MhlI | GDGCHC | 2 cut(s) | 201, 239 |
| MlsI | TGGCCA | 1 cut(s) | 1094 |
| MluCI | AATT | 6 cut(s) | 127, 576, 591, 979, 1022, 1076 |
| MluNI | TGGCCA | 1 cut(s) | 1094 |
| MlyI | GAGTC | 5 cut(s) | 256, 305, 536, 921, 983 |
| MmeI | TCCRAC | 1 cut(s) | 34 |
| Mox20I | TGGCCA | 1 cut(s) | 1094 |
| MscI | TGGCCA | 1 cut(s) | 1094 |
| MseI | TTAA | 3 cut(s) | 213, 561, 1079 |
| Msp20I | TGGCCA | 1 cut(s) | 1094 |
| MspCI | CTTAAG | 1 cut(s) | 212 |
| MspI | CCGG | 3 cut(s) | 254, 710, 1048 |
| MspR9I | CCNGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| MunI | CAATTG | 1 cut(s) | 576 |
| MvaI | CCWGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| MvnI | CGCG | 6 cut(s) | 159, 195, 233, 525, 902, 1034 |
| NdeII | GATC | 6 cut(s) | 5, 21, 544, 763, 1000, 1063 |
| NlaIII | CATG | 7 cut(s) | 102, 454, 554, 659, 668, 707, 817 |
| NmeAIII | GCCGAG | 1 cut(s) | 610 |
| NmuCI | GTSAC | 1 cut(s) | 528 |
| NruI | TCGCGA | 1 cut(s) | 1034 |
| NspI | RCATGY | 3 cut(s) | 102, 554, 817 |
| PaeI | GCATGC | 1 cut(s) | 817 |
| PaeR7I | CTCGAG | 1 cut(s) | 485 |
| PagI | TCATGA | 1 cut(s) | 703 |
| PalAI | GGCGCGCC | 1 cut(s) | 900 |
| PauI | GCGCGC | 2 cut(s) | 157, 900 |
| PceI | AGGCCT | 1 cut(s) | 861 |
| PciI | ACATGT | 1 cut(s) | 550 |
| PfeI | GAWTC | 1 cut(s) | 1057 |
| PinAI | ACCGGT | 1 cut(s) | 709 |
| PkrI | GCNGC | 4 cut(s) | 349, 352, 432, 583 |
| PleI | GAGTC | 5 cut(s) | 255, 305, 535, 920, 983 |
| PpsI | GAGTC | 5 cut(s) | 255, 305, 535, 920, 983 |
| PscI | ACATGT | 1 cut(s) | 550 |
| Psp6I | CCWGG | 9 cut(s) | 435, 639, 832, 873, 895, 932, 942, 1094, 1104 |
| PspGI | CCWGG | 9 cut(s) | 435, 639, 832, 873, 895, 932, 942, 1094, 1104 |
| PspPI | GGNCC | 7 cut(s) | 826, 877, 930, 958, 1005, 1050, 1072 |
| PstNI | CAGNNNCTG | 1 cut(s) | 728 |
| PsuI | RGATCY | 2 cut(s) | 763, 1063 |
| PteI | GCGCGC | 2 cut(s) | 157, 900 |
| RruI | TCGCGA | 1 cut(s) | 1034 |
| RsaI | GTAC | 2 cut(s) | 699, 923 |
| RsaNI | GTAC | 2 cut(s) | 698, 922 |
| SaqAI | TTAA | 3 cut(s) | 213, 561, 1079 |
| SatI | GCNGC | 4 cut(s) | 348, 351, 431, 582 |
| Sau3AI | GATC | 6 cut(s) | 5, 21, 544, 763, 1000, 1063 |
| Sau96I | GGNCC | 7 cut(s) | 826, 877, 930, 958, 1005, 1050, 1072 |
| ScaI | AGTACT | 1 cut(s) | 923 |
| SchI | GAGTC | 5 cut(s) | 256, 305, 536, 921, 983 |
| ScrFI | CCNGG | 9 cut(s) | 437, 641, 834, 875, 897, 934, 944, 1096, 1106 |
| SduI | GDGCHC | 2 cut(s) | 201, 239 |
| SfaNI | GCATC | 2 cut(s) | 505, 838 |
| SfcI | CTRYAG | 1 cut(s) | 285 |
| Sfr274I | CTCGAG | 1 cut(s) | 485 |
| SgsI | GGCGCGCC | 1 cut(s) | 900 |
| SinI | GGWCC | 2 cut(s) | 826, 1050 |
| SlaI | CTCGAG | 1 cut(s) | 485 |
| SmlI | CTYRAG | 3 cut(s) | 212, 485, 925 |
| SmoI | CTYRAG | 3 cut(s) | 212, 485, 925 |
| SphI | GCATGC | 1 cut(s) | 817 |
| Sse9I | AATT | 6 cut(s) | 127, 576, 591, 979, 1022, 1076 |
| SseBI | AGGCCT | 1 cut(s) | 861 |
| SsiI | CCGC | 5 cut(s) | 102, 231, 431, 464, 523 |
| SspMI | CTAG | 4 cut(s) | 797, 852, 909, 1118 |
| StuI | AGGCCT | 1 cut(s) | 861 |
| StyD4I | CCNGG | 9 cut(s) | 435, 639, 832, 873, 895, 932, 942, 1094, 1104 |
| TaaI | ACNGT | 2 cut(s) | 52, 1087 |
| TaqI | TCGA | 5 cut(s) | 424, 486, 612, 732, 1140 |
| TaqII | GACCGA | 1 cut(s) | 404 |
| TasI | AATT | 6 cut(s) | 127, 576, 591, 979, 1022, 1076 |
| TatI | WGTACW | 1 cut(s) | 921 |
| TauI | GCSGC | 1 cut(s) | 433 |
| TfiI | GAWTC | 1 cut(s) | 1057 |
| Tru1I | TTAA | 3 cut(s) | 213, 561, 1079 |
| Tru9I | TTAA | 3 cut(s) | 213, 561, 1079 |
| TseFI | GTSAC | 1 cut(s) | 528 |
| TseI | GCWGC | 3 cut(s) | 347, 350, 581 |
| Tsp45I | GTSAC | 1 cut(s) | 528 |
| TspDTI | ATGAA | 4 cut(s) | 86, 423, 720, 989 |
| TspGWI | ACGGA | 2 cut(s) | 308, 854 |
| Vha464I | CTTAAG | 1 cut(s) | 212 |
| VpaK11BI | GGWCC | 2 cut(s) | 826, 1050 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 563 |
| XceI | RCATGY | 3 cut(s) | 102, 554, 817 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1102 |
| XhoI | CTCGAG | 1 cut(s) | 485 |
| XspI | CTAG | 4 cut(s) | 797, 852, 909, 1118 |
| ZrmI | AGTACT | 1 cut(s) | 923 |