Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 323 |
| AciI | CCGC | 3 cut(s) | 132, 186, 292 |
| AclWI | GGATC | 2 cut(s) | 388, 401 |
| AcoI | YGGCCR | 1 cut(s) | 70 |
| AcsI | RAATTY | 1 cut(s) | 218 |
| AcyI | GRCGYC | 1 cut(s) | 324 |
| AfaI | GTAC | 1 cut(s) | 206 |
| AfeI | AGCGCT | 1 cut(s) | 124 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 50, 320 |
| AjnI | CCWGG | 2 cut(s) | 165, 345 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| AlwI | GGATC | 2 cut(s) | 388, 401 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 151 |
| Aor51HI | AGCGCT | 1 cut(s) | 124 |
| AoxI | GGCC | 6 cut(s) | 37, 70, 105, 276, 348, 382 |
| ApeKI | GCWGC | 1 cut(s) | 120 |
| ApoI | RAATTY | 1 cut(s) | 218 |
| AspLEI | GCGC | 2 cut(s) | 125, 326 |
| AspS9I | GGNCC | 2 cut(s) | 106, 277 |
| AsuHPI | GGTGA | 1 cut(s) | 19 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BamHI | GGATCC | 1 cut(s) | 393 |
| BanI | GGYRCC | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BbvI | GCAGC | 1 cut(s) | 132 |
| BccI | CCATC | 1 cut(s) | 53 |
| BceAI | ACGGC | 1 cut(s) | 291 |
| BciT130I | CCWGG | 2 cut(s) | 167, 347 |
| BfaI | CTAG | 2 cut(s) | 305, 406 |
| BfoI | RGCGCY | 2 cut(s) | 126, 327 |
| BisI | GCNGC | 3 cut(s) | 121, 133, 292 |
| BlsI | GCNGC | 3 cut(s) | 122, 134, 293 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| Bme1390I | CCNGG | 2 cut(s) | 167, 347 |
| BmgT120I | GGNCC | 2 cut(s) | 106, 277 |
| BmiI | GGNNCC | 3 cut(s) | 136, 325, 395 |
| BmrFI | CCNGG | 2 cut(s) | 167, 347 |
| BmsI | GCATC | 2 cut(s) | 367, 384 |
| BsaBI | GATNNNNATC | 1 cut(s) | 374 |
| BsaHI | GRCGYC | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 2 cut(s) | 102, 249 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 119, 149 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 50, 320 |
| Bse1I | ACTGG | 3 cut(s) | 40, 187, 212 |
| Bse8I | GATNNNNATC | 1 cut(s) | 374 |
| BseBI | CCWGG | 2 cut(s) | 167, 347 |
| BseDI | CCNNGG | 2 cut(s) | 102, 249 |
| BseJI | GATNNNNATC | 1 cut(s) | 374 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 50, 320 |
| BseNI | ACTGG | 3 cut(s) | 40, 187, 212 |
| BseXI | GCAGC | 1 cut(s) | 132 |
| BsgI | GTGCAG | 1 cut(s) | 214 |
| BshFI | GGCC | 6 cut(s) | 39, 72, 107, 278, 350, 384 |
| BshNI | GGYRCC | 1 cut(s) | 323 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 50, 320 |
| BsnI | GGCC | 6 cut(s) | 39, 72, 107, 278, 350, 384 |
| Bsp1286I | GDGCHC | 1 cut(s) | 174 |
| Bsp143I | GATC | 1 cut(s) | 393 |
| Bsp19I | CCATGG | 2 cut(s) | 102, 249 |
| BspACI | CCGC | 3 cut(s) | 132, 186, 292 |
| BspANI | GGCC | 6 cut(s) | 39, 72, 107, 278, 350, 384 |
| BspLI | GGNNCC | 3 cut(s) | 136, 325, 395 |
| BspPI | GGATC | 2 cut(s) | 388, 401 |
| BspT107I | GGYRCC | 1 cut(s) | 323 |
| BsrI | ACTGG | 3 cut(s) | 40, 187, 212 |
| BssECI | CCNNGG | 2 cut(s) | 102, 249 |
| BssMI | GATC | 1 cut(s) | 393 |
| BssNI | GRCGYC | 1 cut(s) | 324 |
| BssT1I | CCWWGG | 2 cut(s) | 102, 249 |
| Bst2UI | CCWGG | 2 cut(s) | 167, 347 |
| Bst4CI | ACNGT | 1 cut(s) | 147 |
| BstACI | GRCGYC | 1 cut(s) | 324 |
| BstC8I | GCNNGC | 1 cut(s) | 245 |
| BstDEI | CTNAG | 1 cut(s) | 199 |
| BstDSI | CCRYGG | 2 cut(s) | 102, 249 |
| BstH2I | RGCGCY | 2 cut(s) | 126, 327 |
| BstHHI | GCGC | 2 cut(s) | 125, 326 |
| BstKTI | GATC | 1 cut(s) | 396 |
| BstMBI | GATC | 1 cut(s) | 393 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 64, 129, 381 |
| BstNI | CCWGG | 2 cut(s) | 167, 347 |
| BstSCI | CCNGG | 2 cut(s) | 165, 345 |
| BstV1I | GCAGC | 1 cut(s) | 132 |
| BstX2I | RGATCY | 1 cut(s) | 393 |
| BstYI | RGATCY | 1 cut(s) | 393 |
| BsuRI | GGCC | 6 cut(s) | 39, 72, 107, 278, 350, 384 |
| BtgI | CCRYGG | 2 cut(s) | 102, 249 |
| BtsI | GCAGTG | 1 cut(s) | 301 |
| BtsIMutI | CAGTG | 3 cut(s) | 33, 152, 301 |
| Cac8I | GCNNGC | 1 cut(s) | 245 |
| CaiI | CAGNNNCTG | 1 cut(s) | 151 |
| CfoI | GCGC | 2 cut(s) | 125, 326 |
| Cfr13I | GGNCC | 2 cut(s) | 106, 277 |
| Csp6I | GTAC | 1 cut(s) | 205 |
| CviAII | CATG | 4 cut(s) | 68, 103, 113, 250 |
| CviQI | GTAC | 1 cut(s) | 205 |
| DdeI | CTNAG | 1 cut(s) | 199 |
| DinI | GGCGCC | 1 cut(s) | 325 |
| DpnI | GATC | 1 cut(s) | 395 |
| DpnII | GATC | 1 cut(s) | 393 |
| EaeI | YGGCCR | 1 cut(s) | 70 |
| EciI | GGCGGA | 1 cut(s) | 201 |
| Eco130I | CCWWGG | 2 cut(s) | 102, 249 |
| Eco47III | AGCGCT | 1 cut(s) | 124 |
| EcoRII | CCWGG | 2 cut(s) | 165, 345 |
| EcoT14I | CCWWGG | 2 cut(s) | 102, 249 |
| EcoT22I | ATGCAT | 1 cut(s) | 360 |
| EgeI | GGCGCC | 1 cut(s) | 325 |
| EheI | GGCGCC | 1 cut(s) | 325 |
| ErhI | CCWWGG | 2 cut(s) | 102, 249 |
| FaeI | CATG | 4 cut(s) | 71, 106, 116, 253 |
| FaiI | YATR | 5 cut(s) | 69, 104, 114, 251, 356 |
| FatI | CATG | 4 cut(s) | 67, 102, 112, 249 |
| Fnu4HI | GCNGC | 3 cut(s) | 121, 133, 292 |
| Fsp4HI | GCNGC | 3 cut(s) | 121, 133, 292 |
| FspBI | CTAG | 2 cut(s) | 305, 406 |
| GlaI | GCGC | 2 cut(s) | 124, 325 |
| GluI | GCNGC | 3 cut(s) | 121, 133, 292 |
| HaeII | RGCGCY | 2 cut(s) | 126, 327 |
| HaeIII | GGCC | 6 cut(s) | 39, 72, 107, 278, 350, 384 |
| HhaI | GCGC | 2 cut(s) | 125, 326 |
| Hin1I | GRCGYC | 1 cut(s) | 324 |
| Hin1II | CATG | 4 cut(s) | 71, 106, 116, 253 |
| Hin6I | GCGC | 2 cut(s) | 123, 324 |
| HinP1I | GCGC | 2 cut(s) | 123, 324 |
| HinfI | GANTC | 2 cut(s) | 80, 262 |
| HphI | GGTGA | 1 cut(s) | 19 |
| Hpy188III | TCNNGA | 1 cut(s) | 367 |
| HpyCH4III | ACNGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 4 cut(s) | 67, 231, 243, 358 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 64, 129, 381 |
| HpyF3I | CTNAG | 1 cut(s) | 199 |
| Hsp92I | GRCGYC | 1 cut(s) | 324 |
| Hsp92II | CATG | 4 cut(s) | 71, 106, 116, 253 |
| HspAI | GCGC | 2 cut(s) | 123, 324 |
| KasI | GGCGCC | 1 cut(s) | 323 |
| Kzo9I | GATC | 1 cut(s) | 393 |
| LmnI | GCTCC | 2 cut(s) | 140, 169 |
| Lsp1109I | GCAGC | 1 cut(s) | 132 |
| LweI | GCATC | 2 cut(s) | 367, 384 |
| MaeI | CTAG | 2 cut(s) | 305, 406 |
| MaeIII | GTNAC | 1 cut(s) | 85 |
| MalI | GATC | 1 cut(s) | 395 |
| MboI | GATC | 1 cut(s) | 393 |
| MboII | GAAGA | 2 cut(s) | 217, 257 |
| MflI | RGATCY | 1 cut(s) | 393 |
| MhlI | GDGCHC | 1 cut(s) | 174 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 3 cut(s) | 74, 189, 218 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| Mly113I | GGCGCC | 1 cut(s) | 324 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MmeI | TCCRAC | 1 cut(s) | 31 |
| MnlI | CCTC | 3 cut(s) | 247, 290, 338 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| Mph1103I | ATGCAT | 1 cut(s) | 360 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 1 cut(s) | 132 |
| MspR9I | CCNGG | 2 cut(s) | 167, 347 |
| MvaI | CCWGG | 2 cut(s) | 167, 347 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 64, 129, 381 |
| NarI | GGCGCC | 1 cut(s) | 324 |
| NcoI | CCATGG | 2 cut(s) | 102, 249 |
| NdeII | GATC | 1 cut(s) | 393 |
| NlaIII | CATG | 4 cut(s) | 71, 106, 116, 253 |
| NlaIV | GGNNCC | 3 cut(s) | 136, 325, 395 |
| NmuCI | GTSAC | 1 cut(s) | 85 |
| NsiI | ATGCAT | 1 cut(s) | 360 |
| PfeI | GAWTC | 1 cut(s) | 262 |
| PflFI | GACNNNGTC | 1 cut(s) | 83 |
| PkrI | GCNGC | 3 cut(s) | 122, 134, 293 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PluTI | GGCGCC | 1 cut(s) | 327 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| Psp6I | CCWGG | 2 cut(s) | 165, 345 |
| PspGI | CCWGG | 2 cut(s) | 165, 345 |
| PspN4I | GGNNCC | 3 cut(s) | 136, 325, 395 |
| PspPI | GGNCC | 2 cut(s) | 106, 277 |
| PstNI | CAGNNNCTG | 1 cut(s) | 151 |
| PsuI | RGATCY | 1 cut(s) | 393 |
| PsyI | GACNNNGTC | 1 cut(s) | 83 |
| RsaI | GTAC | 1 cut(s) | 206 |
| RsaNI | GTAC | 1 cut(s) | 205 |
| SatI | GCNGC | 3 cut(s) | 121, 133, 292 |
| Sau3AI | GATC | 1 cut(s) | 393 |
| Sau96I | GGNCC | 2 cut(s) | 106, 277 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SchI | GAGTC | 1 cut(s) | 74 |
| ScrFI | CCNGG | 2 cut(s) | 167, 347 |
| SduI | GDGCHC | 1 cut(s) | 174 |
| SetI | ASST | 1 cut(s) | 316 |
| SfaNI | GCATC | 2 cut(s) | 367, 384 |
| SfoI | GGCGCC | 1 cut(s) | 325 |
| Sse9I | AATT | 3 cut(s) | 74, 189, 218 |
| SsiI | CCGC | 3 cut(s) | 132, 186, 292 |
| SspDI | GGCGCC | 1 cut(s) | 323 |
| SspMI | CTAG | 2 cut(s) | 305, 406 |
| StyD4I | CCNGG | 2 cut(s) | 165, 345 |
| StyI | CCWWGG | 2 cut(s) | 102, 249 |
| TaaI | ACNGT | 1 cut(s) | 147 |
| TaqI | TCGA | 3 cut(s) | 78, 98, 366 |
| TasI | AATT | 3 cut(s) | 74, 189, 218 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TauI | GCSGC | 2 cut(s) | 135, 294 |
| TfiI | GAWTC | 1 cut(s) | 262 |
| TscAI | CASTG | 3 cut(s) | 40, 152, 301 |
| TseFI | GTSAC | 1 cut(s) | 85 |
| TseI | GCWGC | 1 cut(s) | 120 |
| Tsp45I | GTSAC | 1 cut(s) | 85 |
| TspDTI | ATGAA | 1 cut(s) | 211 |
| TspRI | CASTG | 3 cut(s) | 40, 152, 301 |
| Tth111I | GACNNNGTC | 1 cut(s) | 83 |
| XapI | RAATTY | 1 cut(s) | 218 |
| XspI | CTAG | 2 cut(s) | 305, 406 |
| ZrmI | AGTACT | 1 cut(s) | 206 |
| Zsp2I | ATGCAT | 1 cut(s) | 360 |