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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 109 |
| Acc65I | GGTACC | 1 cut(s) | 632 |
| AccB1I | GGYRCC | 1 cut(s) | 632 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 283 |
| AccI | GTMKAC | 1 cut(s) | 507 |
| AccII | CGCG | 7 cut(s) | 15, 79, 101, 168, 466, 524, 549 |
| AciI | CCGC | 9 cut(s) | 13, 79, 99, 166, 395, 464, 488, 522, 524 |
| AclWI | GGATC | 1 cut(s) | 218 |
| AcuI | CTGAAG | 2 cut(s) | 233, 438 |
| AfaI | GTAC | 2 cut(s) | 387, 634 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 283, 502, 594, 595 |
| AgsI | TTSAA | 2 cut(s) | 125, 242 |
| AleI | CACNNNNGTG | 1 cut(s) | 135 |
| AluBI | AGCT | 8 cut(s) | 58, 113, 128, 188, 247, 322, 368, 404 |
| AluI | AGCT | 8 cut(s) | 58, 113, 128, 188, 247, 322, 368, 404 |
| Alw26I | GTCTC | 2 cut(s) | 360, 454 |
| AlwI | GGATC | 1 cut(s) | 218 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 437 |
| AoxI | GGCC | 6 cut(s) | 33, 252, 273, 294, 493, 585 |
| ApeKI | GCWGC | 3 cut(s) | 338, 404, 407 |
| AseI | ATTAAT | 1 cut(s) | 84 |
| Asp718I | GGTACC | 1 cut(s) | 632 |
| AspLEI | GCGC | 2 cut(s) | 79, 551 |
| AspS9I | GGNCC | 6 cut(s) | 202, 231, 253, 274, 295, 586 |
| AsuC2I | CCSGG | 1 cut(s) | 576 |
| AsuHPI | GGTGA | 2 cut(s) | 19, 301 |
| AvaII | GGWCC | 2 cut(s) | 202, 231 |
| BanI | GGYRCC | 1 cut(s) | 632 |
| BbvCI | CCTCAGC | 1 cut(s) | 318 |
| BbvI | GCAGC | 3 cut(s) | 350, 391, 394 |
| BceAI | ACGGC | 1 cut(s) | 309 |
| BcnI | CCSGG | 1 cut(s) | 576 |
| BcoDI | GTCTC | 2 cut(s) | 360, 454 |
| BfaI | CTAG | 5 cut(s) | 114, 323, 335, 417, 558 |
| BfuAI | ACCTGC | 1 cut(s) | 109 |
| BisI | GCNGC | 4 cut(s) | 13, 339, 405, 408 |
| BlsI | GCNGC | 4 cut(s) | 14, 340, 406, 409 |
| Bme1390I | CCNGG | 1 cut(s) | 576 |
| Bme18I | GGWCC | 2 cut(s) | 202, 231 |
| BmgT120I | GGNCC | 6 cut(s) | 202, 231, 253, 274, 295, 586 |
| BmiI | GGNNCC | 4 cut(s) | 203, 233, 315, 634 |
| BmrFI | CCNGG | 1 cut(s) | 576 |
| BmrI | ACTGGG | 1 cut(s) | 271 |
| BmsI | GCATC | 1 cut(s) | 170 |
| BmuI | ACTGGG | 1 cut(s) | 271 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 177, 209, 434, 466, 535, 567 |
| Bpu10I | CCTNAGC | 1 cut(s) | 318 |
| BpuEI | CTTGAG | 3 cut(s) | 93, 323, 354 |
| BpuMI | CCSGG | 1 cut(s) | 576 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 522, 589 |
| BsaWI | WCCGGW | 2 cut(s) | 629, 660 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 54, 84, 552, 582 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 283, 502, 594, 595 |
| Bse1I | ACTGG | 1 cut(s) | 277 |
| BseDI | CCNNGG | 3 cut(s) | 30, 522, 589 |
| BseGI | GGATG | 1 cut(s) | 161 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 283, 502, 594, 595 |
| BseMII | CTCAG | 3 cut(s) | 332, 371, 429 |
| BseNI | ACTGG | 1 cut(s) | 277 |
| BseRI | GAGGAG | 2 cut(s) | 455, 483 |
| BseXI | GCAGC | 3 cut(s) | 350, 391, 394 |
| Bsh1236I | CGCG | 7 cut(s) | 15, 79, 101, 168, 466, 524, 549 |
| Bsh1285I | CGRYCG | 1 cut(s) | 99 |
| BshFI | GGCC | 6 cut(s) | 35, 254, 275, 296, 495, 587 |
| BshNI | GGYRCC | 1 cut(s) | 632 |
| BsiEI | CGRYCG | 1 cut(s) | 99 |
| BsiSI | CCGG | 3 cut(s) | 576, 630, 661 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 283, 502, 594, 595 |
| BsmAI | GTCTC | 2 cut(s) | 360, 454 |
| BsmBI | CGTCTC | 1 cut(s) | 454 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsnI | GGCC | 6 cut(s) | 35, 254, 275, 296, 495, 587 |
| Bsp143I | GATC | 3 cut(s) | 210, 261, 669 |
| BspACI | CCGC | 9 cut(s) | 13, 79, 99, 166, 395, 464, 488, 522, 524 |
| BspANI | GGCC | 6 cut(s) | 35, 254, 275, 296, 495, 587 |
| BspCNI | CTCAG | 3 cut(s) | 331, 370, 430 |
| BspFNI | CGCG | 7 cut(s) | 15, 79, 101, 168, 466, 524, 549 |
| BspLI | GGNNCC | 4 cut(s) | 203, 233, 315, 634 |
| BspMI | ACCTGC | 1 cut(s) | 109 |
| BspPI | GGATC | 1 cut(s) | 218 |
| BspT107I | GGYRCC | 1 cut(s) | 632 |
| BsrI | ACTGG | 1 cut(s) | 277 |
| BssECI | CCNNGG | 3 cut(s) | 30, 522, 589 |
| BssMI | GATC | 3 cut(s) | 210, 261, 669 |
| BssT1I | CCWWGG | 1 cut(s) | 589 |
| Bst4CI | ACNGT | 1 cut(s) | 512 |
| Bst6I | CTCTTC | 2 cut(s) | 457, 628 |
| BstC8I | GCNNGC | 3 cut(s) | 402, 464, 553 |
| BstDEI | CTNAG | 5 cut(s) | 318, 357, 364, 438, 655 |
| BstDSI | CCRYGG | 1 cut(s) | 522 |
| BstF5I | GGATG | 1 cut(s) | 161 |
| BstFNI | CGCG | 7 cut(s) | 15, 79, 101, 168, 466, 524, 549 |
| BstHHI | GCGC | 2 cut(s) | 79, 551 |
| BstKTI | GATC | 3 cut(s) | 213, 264, 672 |
| BstMAI | GTCTC | 2 cut(s) | 360, 454 |
| BstMBI | GATC | 3 cut(s) | 210, 261, 669 |
| BstMCI | CGRYCG | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 152, 347, 401, 413 |
| BstSCI | CCNGG | 1 cut(s) | 574 |
| BstUI | CGCG | 7 cut(s) | 15, 79, 101, 168, 466, 524, 549 |
| BstV1I | GCAGC | 3 cut(s) | 350, 391, 394 |
| BstX2I | RGATCY | 2 cut(s) | 210, 669 |
| BstYI | RGATCY | 2 cut(s) | 210, 669 |
| BsuRI | GGCC | 6 cut(s) | 35, 254, 275, 296, 495, 587 |
| BtgI | CCRYGG | 1 cut(s) | 522 |
| BtgZI | GCGATG | 1 cut(s) | 365 |
| BtsCI | GGATG | 1 cut(s) | 161 |
| BtsI | GCAGTG | 1 cut(s) | 652 |
| BtsIMutI | CAGTG | 1 cut(s) | 652 |
| BveI | ACCTGC | 1 cut(s) | 109 |
| Cac8I | GCNNGC | 3 cut(s) | 402, 464, 553 |
| CaiI | CAGNNNCTG | 1 cut(s) | 437 |
| CfoI | GCGC | 2 cut(s) | 79, 551 |
| Cfr13I | GGNCC | 6 cut(s) | 202, 231, 253, 274, 295, 586 |
| Cfr42I | CCGCGG | 1 cut(s) | 525 |
| CseI | GACGC | 1 cut(s) | 422 |
| Csp6I | GTAC | 2 cut(s) | 386, 633 |
| CviAII | CATG | 1 cut(s) | 474 |
| CviQI | GTAC | 2 cut(s) | 386, 633 |
| DdeI | CTNAG | 5 cut(s) | 318, 357, 364, 438, 655 |
| DpnI | GATC | 3 cut(s) | 212, 263, 671 |
| DpnII | GATC | 3 cut(s) | 210, 261, 669 |
| Eam1104I | CTCTTC | 2 cut(s) | 457, 628 |
| EarI | CTCTTC | 2 cut(s) | 457, 628 |
| EciI | GGCGGA | 1 cut(s) | 503 |
| Eco130I | CCWWGG | 1 cut(s) | 589 |
| Eco47I | GGWCC | 2 cut(s) | 202, 231 |
| Eco57I | CTGAAG | 2 cut(s) | 233, 438 |
| EcoO109I | RGGNCCY | 1 cut(s) | 202 |
| EcoT14I | CCWWGG | 1 cut(s) | 589 |
| ErhI | CCWWGG | 1 cut(s) | 589 |
| Esp3I | CGTCTC | 1 cut(s) | 454 |
| FaeI | CATG | 1 cut(s) | 477 |
| FaiI | YATR | 4 cut(s) | 52, 54, 475, 602 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FatI | CATG | 1 cut(s) | 473 |
| FauI | CCCGC | 2 cut(s) | 173, 471 |
| FblI | GTMKAC | 1 cut(s) | 507 |
| Fnu4HI | GCNGC | 4 cut(s) | 13, 339, 405, 408 |
| FokI | GGATG | 1 cut(s) | 148 |
| Fsp4HI | GCNGC | 4 cut(s) | 13, 339, 405, 408 |
| FspBI | CTAG | 5 cut(s) | 114, 323, 335, 417, 558 |
| GlaI | GCGC | 2 cut(s) | 78, 550 |
| GluI | GCNGC | 4 cut(s) | 13, 339, 405, 408 |
| HaeIII | GGCC | 6 cut(s) | 35, 254, 275, 296, 495, 587 |
| HapII | CCGG | 3 cut(s) | 576, 630, 661 |
| HgaI | GACGC | 1 cut(s) | 422 |
| HhaI | GCGC | 2 cut(s) | 79, 551 |
| Hin1II | CATG | 1 cut(s) | 477 |
| Hin6I | GCGC | 2 cut(s) | 77, 549 |
| HinP1I | GCGC | 2 cut(s) | 77, 549 |
| HinfI | GANTC | 4 cut(s) | 170, 434, 443, 544 |
| HpaII | CCGG | 3 cut(s) | 576, 630, 661 |
| HphI | GGTGA | 2 cut(s) | 19, 301 |
| Hpy166II | GTNNAC | 1 cut(s) | 508 |
| Hpy188I | TCNGA | 5 cut(s) | 231, 360, 439, 457, 674 |
| Hpy188III | TCNNGA | 4 cut(s) | 46, 242, 425, 558 |
| Hpy8I | GTNNAC | 1 cut(s) | 508 |
| Hpy99I | CGWCG | 1 cut(s) | 416 |
| HpyAV | CCTTC | 6 cut(s) | 236, 477, 485, 588, 598, 626 |
| HpyCH4III | ACNGT | 1 cut(s) | 512 |
| HpyCH4IV | ACGT | 1 cut(s) | 388 |
| HpyCH4V | TGCA | 1 cut(s) | 146 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 152, 347, 401, 413 |
| HpyF3I | CTNAG | 5 cut(s) | 318, 357, 364, 438, 655 |
| HpySE526I | ACGT | 1 cut(s) | 388 |
| Hsp92II | CATG | 1 cut(s) | 477 |
| HspAI | GCGC | 2 cut(s) | 77, 549 |
| KpnI | GGTACC | 1 cut(s) | 636 |
| KspI | CCGCGG | 1 cut(s) | 525 |
| Kzo9I | GATC | 3 cut(s) | 210, 261, 669 |
| LmnI | GCTCC | 2 cut(s) | 397, 470 |
| Lsp1109I | GCAGC | 3 cut(s) | 350, 391, 394 |
| LweI | GCATC | 1 cut(s) | 170 |
| MaeI | CTAG | 5 cut(s) | 114, 323, 335, 417, 558 |
| MaeII | ACGT | 1 cut(s) | 388 |
| MaeIII | GTNAC | 1 cut(s) | 289 |
| MalI | GATC | 3 cut(s) | 212, 263, 671 |
| MboI | GATC | 3 cut(s) | 210, 261, 669 |
| MboII | GAAGA | 5 cut(s) | 444, 492, 507, 510, 615 |
| MfeI | CAATTG | 1 cut(s) | 257 |
| MflI | RGATCY | 2 cut(s) | 210, 669 |
| MluCI | AATT | 1 cut(s) | 257 |
| MlyI | GAGTC | 3 cut(s) | 164, 452, 553 |
| MseI | TTAA | 1 cut(s) | 84 |
| MslI | CAYNNNNRTG | 1 cut(s) | 135 |
| MspA1I | CMGCKG | 1 cut(s) | 524 |
| MspI | CCGG | 3 cut(s) | 576, 630, 661 |
| MspR9I | CCNGG | 1 cut(s) | 576 |
| MunI | CAATTG | 1 cut(s) | 257 |
| MvnI | CGCG | 7 cut(s) | 15, 79, 101, 168, 466, 524, 549 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 152, 347, 401, 413 |
| NciI | CCSGG | 1 cut(s) | 576 |
| NdeII | GATC | 3 cut(s) | 210, 261, 669 |
| NlaIII | CATG | 1 cut(s) | 477 |
| NlaIV | GGNNCC | 4 cut(s) | 203, 233, 315, 634 |
| NmeAIII | GCCGAG | 1 cut(s) | 61 |
| NmuCI | GTSAC | 1 cut(s) | 289 |
| OliI | CACNNNNGTG | 1 cut(s) | 135 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 16 |
| PfeI | GAWTC | 1 cut(s) | 434 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 283 |
| PkrI | GCNGC | 4 cut(s) | 14, 340, 406, 409 |
| PleI | GAGTC | 3 cut(s) | 164, 451, 552 |
| PpsI | GAGTC | 3 cut(s) | 164, 451, 552 |
| PpuMI | RGGWCCY | 1 cut(s) | 202 |
| PshBI | ATTAAT | 1 cut(s) | 84 |
| Psp5II | RGGWCCY | 1 cut(s) | 202 |
| PspN4I | GGNNCC | 4 cut(s) | 203, 233, 315, 634 |
| PspPI | GGNCC | 6 cut(s) | 202, 231, 253, 274, 295, 586 |
| PspPPI | RGGWCCY | 1 cut(s) | 202 |
| PstNI | CAGNNNCTG | 1 cut(s) | 437 |
| PsuI | RGATCY | 2 cut(s) | 210, 669 |
| RsaI | GTAC | 2 cut(s) | 387, 634 |
| RsaNI | GTAC | 2 cut(s) | 386, 633 |
| RseI | CAYNNNNRTG | 1 cut(s) | 135 |
| SacII | CCGCGG | 1 cut(s) | 525 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 4 cut(s) | 13, 339, 405, 408 |
| Sau3AI | GATC | 3 cut(s) | 210, 261, 669 |
| Sau96I | GGNCC | 6 cut(s) | 202, 231, 253, 274, 295, 586 |
| SchI | GAGTC | 3 cut(s) | 164, 452, 553 |
| ScrFI | CCNGG | 1 cut(s) | 576 |
| SfaNI | GCATC | 1 cut(s) | 170 |
| Sfr303I | CCGCGG | 1 cut(s) | 525 |
| SgrBI | CCGCGG | 1 cut(s) | 525 |
| SinI | GGWCC | 2 cut(s) | 202, 231 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 135 |
| SmlI | CTYRAG | 3 cut(s) | 108, 302, 369 |
| SmoI | CTYRAG | 3 cut(s) | 108, 302, 369 |
| Sse9I | AATT | 1 cut(s) | 257 |
| SsiI | CCGC | 9 cut(s) | 13, 79, 99, 166, 395, 464, 488, 522, 524 |
| SspMI | CTAG | 5 cut(s) | 114, 323, 335, 417, 558 |
| StyD4I | CCNGG | 1 cut(s) | 574 |
| StyI | CCWWGG | 1 cut(s) | 589 |
| TaaI | ACNGT | 1 cut(s) | 512 |
| TaiI | ACGT | 1 cut(s) | 391 |
| TaqI | TCGA | 3 cut(s) | 45, 264, 345 |
| TasI | AATT | 1 cut(s) | 257 |
| TauI | GCSGC | 1 cut(s) | 15 |
| TfiI | GAWTC | 1 cut(s) | 434 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 1 cut(s) | 652 |
| TseFI | GTSAC | 1 cut(s) | 289 |
| TseI | GCWGC | 3 cut(s) | 338, 404, 407 |
| Tsp45I | GTSAC | 1 cut(s) | 289 |
| TspDTI | ATGAA | 2 cut(s) | 102, 617 |
| TspGWI | ACGGA | 2 cut(s) | 223, 436 |
| TspRI | CASTG | 1 cut(s) | 652 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 283 |
| VpaK11BI | GGWCC | 2 cut(s) | 202, 231 |
| VspI | ATTAAT | 1 cut(s) | 84 |
| XbaI | TCTAGA | 1 cut(s) | 557 |
| XmiI | GTMKAC | 1 cut(s) | 507 |
| XspI | CTAG | 5 cut(s) | 114, 323, 335, 417, 558 |