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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 154 |
| AccII | CGCG | 4 cut(s) | 125, 132, 138, 461 |
| AciI | CCGC | 7 cut(s) | 57, 230, 254, 445, 468, 519, 574 |
| AcoI | YGGCCR | 5 cut(s) | 227, 281, 352, 552, 571 |
| AcsI | RAATTY | 1 cut(s) | 371 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 37, 66, 67, 332, 602 |
| AgeI | ACCGGT | 2 cut(s) | 317, 395 |
| AgsI | TTSAA | 1 cut(s) | 650 |
| AjnI | CCWGG | 4 cut(s) | 30, 74, 549, 627 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 167, 199 |
| AluBI | AGCT | 2 cut(s) | 405, 417 |
| AluI | AGCT | 2 cut(s) | 405, 417 |
| Alw21I | GWGCWC | 1 cut(s) | 610 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 433 |
| AoxI | GGCC | 8 cut(s) | 54, 85, 227, 281, 352, 387, 552, 571 |
| ApeKI | GCWGC | 2 cut(s) | 402, 414 |
| ApoI | RAATTY | 1 cut(s) | 371 |
| AsiGI | ACCGGT | 2 cut(s) | 317, 395 |
| AspLEI | GCGC | 3 cut(s) | 111, 132, 138 |
| AspS9I | GGNCC | 3 cut(s) | 86, 388, 536 |
| AsuHPI | GGTGA | 2 cut(s) | 283, 307 |
| AvaII | GGWCC | 1 cut(s) | 536 |
| BalI | TGGCCA | 2 cut(s) | 354, 554 |
| BanII | GRGCYC | 2 cut(s) | 342, 588 |
| Bbv12I | GWGCWC | 1 cut(s) | 610 |
| BbvI | GCAGC | 2 cut(s) | 414, 426 |
| BccI | CCATC | 2 cut(s) | 103, 335 |
| BceAI | ACGGC | 3 cut(s) | 176, 349, 586 |
| BciT130I | CCWGG | 4 cut(s) | 32, 76, 551, 629 |
| BfaI | CTAG | 3 cut(s) | 299, 482, 654 |
| BfmI | CTRYAG | 1 cut(s) | 409 |
| BfoI | RGCGCY | 1 cut(s) | 112 |
| BfuAI | ACCTGC | 1 cut(s) | 154 |
| BglII | AGATCT | 1 cut(s) | 141 |
| BisI | GCNGC | 5 cut(s) | 57, 230, 403, 415, 574 |
| BlsI | GCNGC | 5 cut(s) | 58, 231, 404, 416, 575 |
| Bme1390I | CCNGG | 4 cut(s) | 32, 76, 551, 629 |
| Bme18I | GGWCC | 1 cut(s) | 536 |
| BmgT120I | GGNCC | 3 cut(s) | 86, 388, 536 |
| BmiI | GGNNCC | 2 cut(s) | 6, 73 |
| BmrFI | CCNGG | 4 cut(s) | 32, 76, 551, 629 |
| BmsI | GCATC | 2 cut(s) | 297, 649 |
| BsaJI | CCNNGG | 2 cut(s) | 75, 539 |
| BsaWI | WCCGGW | 2 cut(s) | 317, 395 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 37, 66, 67, 332, 602 |
| Bse118I | RCCGGY | 3 cut(s) | 317, 395, 464 |
| Bse1I | ACTGG | 2 cut(s) | 230, 538 |
| BseBI | CCWGG | 4 cut(s) | 32, 76, 551, 629 |
| BseDI | CCNNGG | 2 cut(s) | 75, 539 |
| BseGI | GGATG | 2 cut(s) | 303, 640 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 37, 66, 67, 332, 602 |
| BseNI | ACTGG | 2 cut(s) | 230, 538 |
| BseRI | GAGGAG | 1 cut(s) | 50 |
| BseX3I | CGGCCG | 1 cut(s) | 571 |
| BseXI | GCAGC | 2 cut(s) | 414, 426 |
| Bsh1236I | CGCG | 4 cut(s) | 125, 132, 138, 461 |
| Bsh1285I | CGRYCG | 3 cut(s) | 400, 465, 574 |
| BshFI | GGCC | 8 cut(s) | 56, 87, 229, 283, 354, 389, 554, 573 |
| BshTI | ACCGGT | 2 cut(s) | 317, 395 |
| BsiEI | CGRYCG | 3 cut(s) | 400, 465, 574 |
| BsiHKAI | GWGCWC | 1 cut(s) | 610 |
| BsiSI | CCGG | 3 cut(s) | 318, 396, 465 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 37, 66, 67, 332, 602 |
| BsnI | GGCC | 8 cut(s) | 56, 87, 229, 283, 354, 389, 554, 573 |
| Bsp1286I | GDGCHC | 3 cut(s) | 342, 588, 610 |
| Bsp143I | GATC | 1 cut(s) | 141 |
| Bsp68I | TCGCGA | 1 cut(s) | 125 |
| BspACI | CCGC | 7 cut(s) | 57, 230, 254, 445, 468, 519, 574 |
| BspANI | GGCC | 8 cut(s) | 56, 87, 229, 283, 354, 389, 554, 573 |
| BspFNI | CGCG | 4 cut(s) | 125, 132, 138, 461 |
| BspLI | GGNNCC | 2 cut(s) | 6, 73 |
| BspMI | ACCTGC | 1 cut(s) | 154 |
| BsrFI | RCCGGY | 3 cut(s) | 317, 395, 464 |
| BsrI | ACTGG | 2 cut(s) | 230, 538 |
| BssAI | RCCGGY | 3 cut(s) | 317, 395, 464 |
| BssECI | CCNNGG | 2 cut(s) | 75, 539 |
| BssMI | GATC | 1 cut(s) | 141 |
| BssT1I | CCWWGG | 1 cut(s) | 539 |
| Bst2UI | CCWGG | 4 cut(s) | 32, 76, 551, 629 |
| Bst4CI | ACNGT | 1 cut(s) | 429 |
| BstC8I | GCNNGC | 4 cut(s) | 113, 134, 150, 338 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstF5I | GGATG | 2 cut(s) | 303, 640 |
| BstFNI | CGCG | 4 cut(s) | 125, 132, 138, 461 |
| BstH2I | RGCGCY | 1 cut(s) | 112 |
| BstHHI | GCGC | 3 cut(s) | 111, 132, 138 |
| BstKTI | GATC | 1 cut(s) | 144 |
| BstMBI | GATC | 1 cut(s) | 141 |
| BstMCI | CGRYCG | 3 cut(s) | 400, 465, 574 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 346, 411 |
| BstNI | CCWGG | 4 cut(s) | 32, 76, 551, 629 |
| BstNSI | RCATGY | 1 cut(s) | 640 |
| BstSCI | CCNGG | 4 cut(s) | 30, 74, 549, 627 |
| BstSFI | CTRYAG | 1 cut(s) | 409 |
| BstUI | CGCG | 4 cut(s) | 125, 132, 138, 461 |
| BstV1I | GCAGC | 2 cut(s) | 414, 426 |
| BstX2I | RGATCY | 1 cut(s) | 141 |
| BstYI | RGATCY | 1 cut(s) | 141 |
| BstZI | CGGCCG | 1 cut(s) | 571 |
| BsuRI | GGCC | 8 cut(s) | 56, 87, 229, 283, 354, 389, 554, 573 |
| BtsCI | GGATG | 2 cut(s) | 303, 640 |
| BtsIMutI | CAGTG | 2 cut(s) | 434, 531 |
| BtuMI | TCGCGA | 1 cut(s) | 125 |
| BveI | ACCTGC | 1 cut(s) | 154 |
| Cac8I | GCNNGC | 4 cut(s) | 113, 134, 150, 338 |
| CaiI | CAGNNNCTG | 1 cut(s) | 433 |
| CfoI | GCGC | 3 cut(s) | 111, 132, 138 |
| Cfr10I | RCCGGY | 3 cut(s) | 317, 395, 464 |
| Cfr13I | GGNCC | 3 cut(s) | 86, 388, 536 |
| CspAI | ACCGGT | 2 cut(s) | 317, 395 |
| CviAII | CATG | 4 cut(s) | 116, 350, 578, 637 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 1 cut(s) | 143 |
| DpnII | GATC | 1 cut(s) | 141 |
| EaeI | YGGCCR | 5 cut(s) | 227, 281, 352, 552, 571 |
| EagI | CGGCCG | 1 cut(s) | 571 |
| EciI | GGCGGA | 1 cut(s) | 508 |
| EclXI | CGGCCG | 1 cut(s) | 571 |
| Eco130I | CCWWGG | 1 cut(s) | 539 |
| Eco24I | GRGCYC | 2 cut(s) | 342, 588 |
| Eco47I | GGWCC | 1 cut(s) | 536 |
| Eco52I | CGGCCG | 1 cut(s) | 571 |
| EcoRII | CCWGG | 4 cut(s) | 30, 74, 549, 627 |
| EcoT14I | CCWWGG | 1 cut(s) | 539 |
| EcoT22I | ATGCAT | 1 cut(s) | 642 |
| EcoT38I | GRGCYC | 2 cut(s) | 342, 588 |
| ErhI | CCWWGG | 1 cut(s) | 539 |
| FaeI | CATG | 4 cut(s) | 119, 353, 581, 640 |
| FaiI | YATR | 8 cut(s) | 117, 206, 351, 366, 456, 579, 625, 638 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 491, 523 |
| FatI | CATG | 4 cut(s) | 115, 349, 577, 636 |
| FauI | CCCGC | 1 cut(s) | 461 |
| Fnu4HI | GCNGC | 5 cut(s) | 57, 230, 403, 415, 574 |
| FokI | GGATG | 2 cut(s) | 290, 627 |
| FriOI | GRGCYC | 2 cut(s) | 342, 588 |
| Fsp4HI | GCNGC | 5 cut(s) | 57, 230, 403, 415, 574 |
| FspBI | CTAG | 3 cut(s) | 299, 482, 654 |
| GlaI | GCGC | 3 cut(s) | 110, 131, 137 |
| GluI | GCNGC | 5 cut(s) | 57, 230, 403, 415, 574 |
| HaeII | RGCGCY | 1 cut(s) | 112 |
| HaeIII | GGCC | 8 cut(s) | 56, 87, 229, 283, 354, 389, 554, 573 |
| HapII | CCGG | 3 cut(s) | 318, 396, 465 |
| HhaI | GCGC | 3 cut(s) | 111, 132, 138 |
| Hin1II | CATG | 4 cut(s) | 119, 353, 581, 640 |
| Hin6I | GCGC | 3 cut(s) | 109, 130, 136 |
| HinP1I | GCGC | 3 cut(s) | 109, 130, 136 |
| HinfI | GANTC | 1 cut(s) | 277 |
| HpaII | CCGG | 3 cut(s) | 318, 396, 465 |
| HphI | GGTGA | 2 cut(s) | 283, 307 |
| Hpy166II | GTNNAC | 2 cut(s) | 220, 323 |
| Hpy188I | TCNGA | 2 cut(s) | 105, 590 |
| Hpy188III | TCNNGA | 2 cut(s) | 124, 246 |
| Hpy8I | GTNNAC | 2 cut(s) | 220, 323 |
| Hpy99I | CGWCG | 1 cut(s) | 335 |
| HpyAV | CCTTC | 2 cut(s) | 46, 208 |
| HpyCH4III | ACNGT | 1 cut(s) | 429 |
| HpyCH4V | TGCA | 3 cut(s) | 349, 513, 640 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 346, 411 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Hsp92II | CATG | 4 cut(s) | 119, 353, 581, 640 |
| HspAI | GCGC | 3 cut(s) | 109, 130, 136 |
| Kzo9I | GATC | 1 cut(s) | 141 |
| LmnI | GCTCC | 2 cut(s) | 10, 410 |
| Lsp1109I | GCAGC | 2 cut(s) | 414, 426 |
| LweI | GCATC | 2 cut(s) | 297, 649 |
| MaeI | CTAG | 3 cut(s) | 299, 482, 654 |
| MalI | GATC | 1 cut(s) | 143 |
| MboI | GATC | 1 cut(s) | 141 |
| MflI | RGATCY | 1 cut(s) | 141 |
| MhlI | GDGCHC | 3 cut(s) | 342, 588, 610 |
| MlsI | TGGCCA | 2 cut(s) | 354, 554 |
| MluCI | AATT | 2 cut(s) | 356, 371 |
| MluNI | TGGCCA | 2 cut(s) | 354, 554 |
| MnlI | CCTC | 5 cut(s) | 28, 31, 99, 526, 572 |
| Mox20I | TGGCCA | 2 cut(s) | 354, 554 |
| Mph1103I | ATGCAT | 1 cut(s) | 642 |
| MscI | TGGCCA | 2 cut(s) | 354, 554 |
| MseI | TTAA | 1 cut(s) | 661 |
| Msp20I | TGGCCA | 2 cut(s) | 354, 554 |
| MspI | CCGG | 3 cut(s) | 318, 396, 465 |
| MspR9I | CCNGG | 4 cut(s) | 32, 76, 551, 629 |
| MvaI | CCWGG | 4 cut(s) | 32, 76, 551, 629 |
| MvnI | CGCG | 4 cut(s) | 125, 132, 138, 461 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 346, 411 |
| NdeII | GATC | 1 cut(s) | 141 |
| NlaIII | CATG | 4 cut(s) | 119, 353, 581, 640 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 73 |
| NruI | TCGCGA | 1 cut(s) | 125 |
| NsiI | ATGCAT | 1 cut(s) | 642 |
| NspI | RCATGY | 1 cut(s) | 640 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 129 |
| PfeI | GAWTC | 1 cut(s) | 277 |
| PflFI | GACNNNGTC | 1 cut(s) | 365 |
| PinAI | ACCGGT | 2 cut(s) | 317, 395 |
| PkrI | GCNGC | 5 cut(s) | 58, 231, 404, 416, 575 |
| Psp6I | CCWGG | 4 cut(s) | 30, 74, 549, 627 |
| PspGI | CCWGG | 4 cut(s) | 30, 74, 549, 627 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 73 |
| PspPI | GGNCC | 3 cut(s) | 86, 388, 536 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 201, 233 |
| PstNI | CAGNNNCTG | 1 cut(s) | 433 |
| PsuI | RGATCY | 1 cut(s) | 141 |
| PsyI | GACNNNGTC | 1 cut(s) | 365 |
| RruI | TCGCGA | 1 cut(s) | 125 |
| SaqAI | TTAA | 1 cut(s) | 661 |
| SatI | GCNGC | 5 cut(s) | 57, 230, 403, 415, 574 |
| Sau3AI | GATC | 1 cut(s) | 141 |
| Sau96I | GGNCC | 3 cut(s) | 86, 388, 536 |
| ScrFI | CCNGG | 4 cut(s) | 32, 76, 551, 629 |
| SduI | GDGCHC | 3 cut(s) | 342, 588, 610 |
| SetI | ASST | 6 cut(s) | 13, 168, 296, 407, 419, 518 |
| SfaNI | GCATC | 2 cut(s) | 297, 649 |
| SfcI | CTRYAG | 1 cut(s) | 409 |
| SinI | GGWCC | 1 cut(s) | 536 |
| Sse9I | AATT | 2 cut(s) | 356, 371 |
| SsiI | CCGC | 7 cut(s) | 57, 230, 254, 445, 468, 519, 574 |
| SspMI | CTAG | 3 cut(s) | 299, 482, 654 |
| StyD4I | CCNGG | 4 cut(s) | 30, 74, 549, 627 |
| StyI | CCWWGG | 1 cut(s) | 539 |
| TaaI | ACNGT | 1 cut(s) | 429 |
| TaqI | TCGA | 3 cut(s) | 27, 275, 330 |
| TasI | AATT | 2 cut(s) | 356, 371 |
| TauI | GCSGC | 3 cut(s) | 59, 232, 576 |
| TfiI | GAWTC | 1 cut(s) | 277 |
| Tru1I | TTAA | 1 cut(s) | 661 |
| Tru9I | TTAA | 1 cut(s) | 661 |
| TscAI | CASTG | 2 cut(s) | 434, 538 |
| TseI | GCWGC | 2 cut(s) | 402, 414 |
| TspDTI | ATGAA | 1 cut(s) | 493 |
| TspGWI | ACGGA | 1 cut(s) | 191 |
| TspRI | CASTG | 2 cut(s) | 434, 538 |
| Tth111I | GACNNNGTC | 1 cut(s) | 365 |
| VpaK11BI | GGWCC | 1 cut(s) | 536 |
| XapI | RAATTY | 1 cut(s) | 371 |
| XceI | RCATGY | 1 cut(s) | 640 |
| XspI | CTAG | 3 cut(s) | 299, 482, 654 |
| Zsp2I | ATGCAT | 1 cut(s) | 642 |