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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 276 |
| AccBSI | CCGCTC | 1 cut(s) | 263 |
| AccII | CGCG | 3 cut(s) | 183, 269, 336 |
| AciI | CCGC | 6 cut(s) | 60, 263, 485, 530, 542, 605 |
| AclWI | GGATC | 1 cut(s) | 71 |
| AcsI | RAATTY | 1 cut(s) | 614 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 303, 304, 541 |
| AgsI | TTSAA | 2 cut(s) | 419, 494 |
| AjnI | CCWGG | 3 cut(s) | 136, 281, 291 |
| AluBI | AGCT | 6 cut(s) | 53, 155, 356, 515, 521, 551 |
| AluI | AGCT | 6 cut(s) | 53, 155, 356, 515, 521, 551 |
| Alw21I | GWGCWC | 1 cut(s) | 157 |
| Alw26I | GTCTC | 2 cut(s) | 363, 507 |
| AlwI | GGATC | 1 cut(s) | 71 |
| Ama87I | CYCGRG | 1 cut(s) | 444 |
| AoxI | GGCC | 6 cut(s) | 17, 294, 307, 486, 531, 607 |
| ApeKI | GCWGC | 4 cut(s) | 62, 65, 68, 551 |
| ApoI | RAATTY | 1 cut(s) | 614 |
| AseI | ATTAAT | 1 cut(s) | 252 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 27, 206 |
| AspLEI | GCGC | 2 cut(s) | 143, 277 |
| AspS9I | GGNCC | 6 cut(s) | 17, 295, 307, 399, 532, 607 |
| AsuC2I | CCSGG | 3 cut(s) | 15, 445, 446 |
| AsuHPI | GGTGA | 1 cut(s) | 202 |
| AvaI | CYCGRG | 1 cut(s) | 444 |
| AvaII | GGWCC | 1 cut(s) | 399 |
| BanII | GRGCYC | 1 cut(s) | 157 |
| BbsI | GAAGAC | 1 cut(s) | 230 |
| Bbv12I | GWGCWC | 1 cut(s) | 157 |
| BbvI | GCAGC | 4 cut(s) | 49, 52, 55, 538 |
| BccI | CCATC | 1 cut(s) | 200 |
| BceAI | ACGGC | 1 cut(s) | 11 |
| BciT130I | CCWGG | 3 cut(s) | 138, 283, 293 |
| BciVI | GTATCC | 1 cut(s) | 319 |
| BcnI | CCSGG | 3 cut(s) | 15, 445, 446 |
| BcoDI | GTCTC | 2 cut(s) | 363, 507 |
| BfaI | CTAG | 4 cut(s) | 158, 470, 482, 512 |
| BfmI | CTRYAG | 1 cut(s) | 230 |
| BfuI | GTATCC | 1 cut(s) | 319 |
| BisI | GCNGC | 7 cut(s) | 60, 63, 66, 69, 486, 531, 552 |
| BlsI | GCNGC | 7 cut(s) | 61, 64, 67, 70, 487, 532, 553 |
| Bme1390I | CCNGG | 6 cut(s) | 15, 138, 283, 293, 445, 446 |
| Bme18I | GGWCC | 1 cut(s) | 399 |
| BmeT110I | CYCGRG | 1 cut(s) | 444 |
| BmgT120I | GGNCC | 6 cut(s) | 17, 295, 307, 399, 532, 607 |
| BmiI | GGNNCC | 5 cut(s) | 18, 42, 308, 401, 462 |
| BmrFI | CCNGG | 6 cut(s) | 15, 138, 283, 293, 445, 446 |
| BmsI | GCATC | 2 cut(s) | 152, 550 |
| BpiI | GAAGAC | 1 cut(s) | 230 |
| Bpu10I | CCTNAGC | 1 cut(s) | 87 |
| BpuEI | CTTGAG | 1 cut(s) | 501 |
| BpuMI | CCSGG | 3 cut(s) | 15, 445, 446 |
| BsaJI | CCNNGG | 3 cut(s) | 14, 291, 444 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 303, 304, 541 |
| Bse1I | ACTGG | 2 cut(s) | 108, 564 |
| BseBI | CCWGG | 3 cut(s) | 138, 283, 293 |
| BseDI | CCNNGG | 3 cut(s) | 14, 291, 444 |
| BseGI | GGATG | 2 cut(s) | 126, 143 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 303, 304, 541 |
| BseMII | CTCAG | 2 cut(s) | 78, 189 |
| BseNI | ACTGG | 2 cut(s) | 108, 564 |
| BseXI | GCAGC | 4 cut(s) | 49, 52, 55, 538 |
| Bsh1236I | CGCG | 3 cut(s) | 183, 269, 336 |
| Bsh1285I | CGRYCG | 1 cut(s) | 267 |
| BshFI | GGCC | 6 cut(s) | 19, 296, 309, 488, 533, 609 |
| BsiEI | CGRYCG | 1 cut(s) | 267 |
| BsiHKAI | GWGCWC | 1 cut(s) | 157 |
| BsiHKCI | CYCGRG | 1 cut(s) | 444 |
| BsiSI | CCGG | 3 cut(s) | 14, 20, 445 |
| BslFI | GGGAC | 1 cut(s) | 385 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 303, 304, 541 |
| BsmAI | GTCTC | 2 cut(s) | 363, 507 |
| BsmFI | GGGAC | 1 cut(s) | 385 |
| BsnI | GGCC | 6 cut(s) | 19, 296, 309, 488, 533, 609 |
| BsoBI | CYCGRG | 1 cut(s) | 444 |
| Bsp1286I | GDGCHC | 1 cut(s) | 157 |
| Bsp143I | GATC | 2 cut(s) | 76, 378 |
| Bsp68I | TCGCGA | 3 cut(s) | 183, 269, 336 |
| BspACI | CCGC | 6 cut(s) | 60, 263, 485, 530, 542, 605 |
| BspANI | GGCC | 6 cut(s) | 19, 296, 309, 488, 533, 609 |
| BspCNI | CTCAG | 2 cut(s) | 79, 190 |
| BspFNI | CGCG | 3 cut(s) | 183, 269, 336 |
| BspHI | TCATGA | 1 cut(s) | 46 |
| BspLI | GGNNCC | 5 cut(s) | 18, 42, 308, 401, 462 |
| BspPI | GGATC | 1 cut(s) | 71 |
| BsrBI | CCGCTC | 1 cut(s) | 263 |
| BsrI | ACTGG | 2 cut(s) | 108, 564 |
| BssECI | CCNNGG | 3 cut(s) | 14, 291, 444 |
| BssMI | GATC | 2 cut(s) | 76, 378 |
| Bst2UI | CCWGG | 3 cut(s) | 138, 283, 293 |
| BstC8I | GCNNGC | 5 cut(s) | 185, 279, 288, 549, 607 |
| BstDEI | CTNAG | 2 cut(s) | 87, 198 |
| BstF5I | GGATG | 2 cut(s) | 126, 143 |
| BstFNI | CGCG | 3 cut(s) | 183, 269, 336 |
| BstHHI | GCGC | 2 cut(s) | 143, 277 |
| BstKTI | GATC | 2 cut(s) | 79, 381 |
| BstMAI | GTCTC | 2 cut(s) | 363, 507 |
| BstMBI | GATC | 2 cut(s) | 76, 378 |
| BstMCI | CGRYCG | 1 cut(s) | 267 |
| BstNI | CCWGG | 3 cut(s) | 138, 283, 293 |
| BstSCI | CCNGG | 6 cut(s) | 13, 136, 281, 291, 443, 444 |
| BstSFI | CTRYAG | 1 cut(s) | 230 |
| BstUI | CGCG | 3 cut(s) | 183, 269, 336 |
| BstV1I | GCAGC | 4 cut(s) | 49, 52, 55, 538 |
| BstV2I | GAAGAC | 1 cut(s) | 230 |
| BstX2I | RGATCY | 1 cut(s) | 76 |
| BstYI | RGATCY | 1 cut(s) | 76 |
| BsuI | GTATCC | 1 cut(s) | 319 |
| BsuRI | GGCC | 6 cut(s) | 19, 296, 309, 488, 533, 609 |
| BtsCI | GGATG | 2 cut(s) | 126, 143 |
| BtsI | GCAGTG | 2 cut(s) | 80, 504 |
| BtsIMutI | CAGTG | 3 cut(s) | 80, 195, 504 |
| BtuMI | TCGCGA | 3 cut(s) | 183, 269, 336 |
| Cac8I | GCNNGC | 5 cut(s) | 185, 279, 288, 549, 607 |
| CciI | TCATGA | 1 cut(s) | 46 |
| CfoI | GCGC | 2 cut(s) | 143, 277 |
| Cfr13I | GGNCC | 6 cut(s) | 17, 295, 307, 399, 532, 607 |
| Cfr9I | CCCGGG | 1 cut(s) | 444 |
| CviAII | CATG | 4 cut(s) | 47, 56, 455, 602 |
| DdeI | CTNAG | 2 cut(s) | 87, 198 |
| DpnI | GATC | 2 cut(s) | 78, 380 |
| DpnII | GATC | 2 cut(s) | 76, 378 |
| Ecl136II | GAGCTC | 1 cut(s) | 155 |
| Eco24I | GRGCYC | 1 cut(s) | 157 |
| Eco47I | GGWCC | 1 cut(s) | 399 |
| Eco53kI | GAGCTC | 1 cut(s) | 155 |
| Eco88I | CYCGRG | 1 cut(s) | 444 |
| EcoICRI | GAGCTC | 1 cut(s) | 155 |
| EcoO109I | RGGNCCY | 1 cut(s) | 307 |
| EcoRII | CCWGG | 3 cut(s) | 136, 281, 291 |
| EcoT38I | GRGCYC | 1 cut(s) | 157 |
| FaeI | CATG | 4 cut(s) | 50, 59, 458, 605 |
| FaiI | YATR | 5 cut(s) | 38, 48, 57, 456, 603 |
| FaqI | GGGAC | 1 cut(s) | 385 |
| FatI | CATG | 4 cut(s) | 46, 55, 454, 601 |
| FauI | CCCGC | 1 cut(s) | 598 |
| Fnu4HI | GCNGC | 7 cut(s) | 60, 63, 66, 69, 486, 531, 552 |
| FokI | GGATG | 2 cut(s) | 113, 130 |
| FriOI | GRGCYC | 1 cut(s) | 157 |
| Fsp4HI | GCNGC | 7 cut(s) | 60, 63, 66, 69, 486, 531, 552 |
| FspBI | CTAG | 4 cut(s) | 158, 470, 482, 512 |
| FspI | TGCGCA | 1 cut(s) | 276 |
| GlaI | GCGC | 2 cut(s) | 142, 276 |
| GluI | GCNGC | 7 cut(s) | 60, 63, 66, 69, 486, 531, 552 |
| HaeIII | GGCC | 6 cut(s) | 19, 296, 309, 488, 533, 609 |
| HapII | CCGG | 3 cut(s) | 14, 20, 445 |
| HhaI | GCGC | 2 cut(s) | 143, 277 |
| Hin1II | CATG | 4 cut(s) | 50, 59, 458, 605 |
| Hin6I | GCGC | 2 cut(s) | 141, 275 |
| HinP1I | GCGC | 2 cut(s) | 141, 275 |
| HindIII | AAGCTT | 1 cut(s) | 519 |
| HinfI | GANTC | 2 cut(s) | 235, 598 |
| HpaII | CCGG | 3 cut(s) | 14, 20, 445 |
| HphI | GGTGA | 1 cut(s) | 202 |
| Hpy166II | GTNNAC | 1 cut(s) | 210 |
| Hpy188III | TCNNGA | 6 cut(s) | 47, 99, 158, 182, 268, 335 |
| Hpy8I | GTNNAC | 1 cut(s) | 210 |
| Hpy99I | CGWCG | 1 cut(s) | 183 |
| HpyAV | CCTTC | 1 cut(s) | 105 |
| HpyCH4V | TGCA | 1 cut(s) | 376 |
| HpyF3I | CTNAG | 2 cut(s) | 87, 198 |
| Hsp92II | CATG | 4 cut(s) | 50, 59, 458, 605 |
| HspAI | GCGC | 2 cut(s) | 141, 275 |
| Kzo9I | GATC | 2 cut(s) | 76, 378 |
| LmnI | GCTCC | 2 cut(s) | 40, 544 |
| Lsp1109I | GCAGC | 4 cut(s) | 49, 52, 55, 538 |
| LweI | GCATC | 2 cut(s) | 152, 550 |
| MaeI | CTAG | 4 cut(s) | 158, 470, 482, 512 |
| MaeIII | GTNAC | 1 cut(s) | 436 |
| MalI | GATC | 2 cut(s) | 78, 380 |
| MbiI | CCGCTC | 1 cut(s) | 263 |
| MboI | GATC | 2 cut(s) | 76, 378 |
| MboII | GAAGA | 2 cut(s) | 230, 386 |
| MfeI | CAATTG | 1 cut(s) | 425 |
| MflI | RGATCY | 1 cut(s) | 76 |
| MhlI | GDGCHC | 1 cut(s) | 157 |
| MluCI | AATT | 2 cut(s) | 425, 614 |
| MlyI | GAGTC | 2 cut(s) | 244, 592 |
| MnlI | CCTC | 6 cut(s) | 54, 102, 162, 320, 340, 451 |
| MroXI | GAANNNNTTC | 2 cut(s) | 27, 206 |
| MseI | TTAA | 1 cut(s) | 252 |
| MspA1I | CMGCKG | 1 cut(s) | 62 |
| MspI | CCGG | 3 cut(s) | 14, 20, 445 |
| MspR9I | CCNGG | 6 cut(s) | 15, 138, 283, 293, 445, 446 |
| MunI | CAATTG | 1 cut(s) | 425 |
| MvaI | CCWGG | 3 cut(s) | 138, 283, 293 |
| MvnI | CGCG | 3 cut(s) | 183, 269, 336 |
| NciI | CCSGG | 3 cut(s) | 15, 445, 446 |
| NdeII | GATC | 2 cut(s) | 76, 378 |
| NlaIII | CATG | 4 cut(s) | 50, 59, 458, 605 |
| NlaIV | GGNNCC | 5 cut(s) | 18, 42, 308, 401, 462 |
| NruI | TCGCGA | 3 cut(s) | 183, 269, 336 |
| NsbI | TGCGCA | 1 cut(s) | 276 |
| PagI | TCATGA | 1 cut(s) | 46 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 2 cut(s) | 27, 206 |
| PkrI | GCNGC | 7 cut(s) | 61, 64, 67, 70, 487, 532, 553 |
| PleI | GAGTC | 2 cut(s) | 243, 592 |
| PpsI | GAGTC | 2 cut(s) | 243, 592 |
| PshBI | ATTAAT | 1 cut(s) | 252 |
| Psp124BI | GAGCTC | 1 cut(s) | 157 |
| Psp6I | CCWGG | 3 cut(s) | 136, 281, 291 |
| PspGI | CCWGG | 3 cut(s) | 136, 281, 291 |
| PspN4I | GGNNCC | 5 cut(s) | 18, 42, 308, 401, 462 |
| PspPI | GGNCC | 6 cut(s) | 17, 295, 307, 399, 532, 607 |
| PsuI | RGATCY | 1 cut(s) | 76 |
| RruI | TCGCGA | 3 cut(s) | 183, 269, 336 |
| SacI | GAGCTC | 1 cut(s) | 157 |
| SaqAI | TTAA | 1 cut(s) | 252 |
| SatI | GCNGC | 7 cut(s) | 60, 63, 66, 69, 486, 531, 552 |
| Sau3AI | GATC | 2 cut(s) | 76, 378 |
| Sau96I | GGNCC | 6 cut(s) | 17, 295, 307, 399, 532, 607 |
| SchI | GAGTC | 2 cut(s) | 244, 592 |
| ScrFI | CCNGG | 6 cut(s) | 15, 138, 283, 293, 445, 446 |
| SduI | GDGCHC | 1 cut(s) | 157 |
| SetI | ASST | 8 cut(s) | 55, 157, 332, 358, 513, 517, 523, 553 |
| SfaNI | GCATC | 2 cut(s) | 152, 550 |
| SfcI | CTRYAG | 1 cut(s) | 230 |
| SinI | GGWCC | 1 cut(s) | 399 |
| SmaI | CCCGGG | 1 cut(s) | 446 |
| SmlI | CTYRAG | 1 cut(s) | 516 |
| SmoI | CTYRAG | 1 cut(s) | 516 |
| Sse9I | AATT | 2 cut(s) | 425, 614 |
| SsiI | CCGC | 6 cut(s) | 60, 263, 485, 530, 542, 605 |
| SspMI | CTAG | 4 cut(s) | 158, 470, 482, 512 |
| SstI | GAGCTC | 1 cut(s) | 157 |
| StyD4I | CCNGG | 6 cut(s) | 13, 136, 281, 291, 443, 444 |
| TaqI | TCGA | 1 cut(s) | 9 |
| TaqII | GACCGA | 1 cut(s) | 387 |
| TasI | AATT | 2 cut(s) | 425, 614 |
| TauI | GCSGC | 3 cut(s) | 62, 488, 533 |
| Tru1I | TTAA | 1 cut(s) | 252 |
| Tru9I | TTAA | 1 cut(s) | 252 |
| TscAI | CASTG | 3 cut(s) | 87, 202, 504 |
| TseI | GCWGC | 4 cut(s) | 62, 65, 68, 551 |
| TspDTI | ATGAA | 3 cut(s) | 17, 63, 270 |
| TspGWI | ACGGA | 2 cut(s) | 262, 338 |
| TspMI | CCCGGG | 1 cut(s) | 444 |
| TspRI | CASTG | 3 cut(s) | 87, 202, 504 |
| VpaK11BI | GGWCC | 1 cut(s) | 399 |
| VspI | ATTAAT | 1 cut(s) | 252 |
| XapI | RAATTY | 1 cut(s) | 614 |
| XbaI | TCTAGA | 1 cut(s) | 157 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 571 |
| XmaI | CCCGGG | 1 cut(s) | 444 |
| XmnI | GAANNNNTTC | 2 cut(s) | 27, 206 |
| XspI | CTAG | 4 cut(s) | 158, 470, 482, 512 |