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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 185 |
| AccBSI | CCGCTC | 2 cut(s) | 116, 348 |
| AccII | CGCG | 3 cut(s) | 252, 416, 438 |
| AccIII | TCCGGA | 2 cut(s) | 137, 378 |
| AciI | CCGC | 6 cut(s) | 74, 114, 348, 368, 478, 536 |
| AclWI | GGATC | 3 cut(s) | 8, 21, 488 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AfaI | GTAC | 1 cut(s) | 249 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 38, 137, 469 |
| AgsI | TTSAA | 2 cut(s) | 521, 554 |
| AluBI | AGCT | 4 cut(s) | 256, 328, 393, 517 |
| AluI | AGCT | 4 cut(s) | 256, 328, 393, 517 |
| Alw21I | GWGCWC | 1 cut(s) | 258 |
| Alw26I | GTCTC | 1 cut(s) | 296 |
| AlwI | GGATC | 3 cut(s) | 8, 21, 488 |
| Ama87I | CYCGRG | 3 cut(s) | 93, 257, 394 |
| Aor13HI | TCCGGA | 2 cut(s) | 137, 378 |
| AoxI | GGCC | 5 cut(s) | 99, 169, 409, 456, 543 |
| ApeKI | GCWGC | 2 cut(s) | 110, 586 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| AseI | ATTAAT | 1 cut(s) | 353 |
| AspLEI | GCGC | 1 cut(s) | 418 |
| AspS9I | GGNCC | 7 cut(s) | 76, 100, 170, 409, 456, 501, 544 |
| AsuC2I | CCSGG | 4 cut(s) | 177, 241, 547, 583 |
| AsuHPI | GGTGA | 5 cut(s) | 16, 61, 304, 485, 550 |
| AvaI | CYCGRG | 3 cut(s) | 93, 257, 394 |
| AvaII | GGWCC | 2 cut(s) | 76, 501 |
| BamHI | GGATCC | 1 cut(s) | 13 |
| BanII | GRGCYC | 4 cut(s) | 207, 225, 258, 401 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 552, 584 |
| BauI | CACGAG | 3 cut(s) | 125, 218, 284 |
| Bbv12I | GWGCWC | 1 cut(s) | 258 |
| BbvI | GCAGC | 1 cut(s) | 97 |
| BccI | CCATC | 3 cut(s) | 194, 302, 467 |
| BceAI | ACGGC | 1 cut(s) | 558 |
| BcnI | CCSGG | 4 cut(s) | 177, 241, 547, 583 |
| BcoDI | GTCTC | 1 cut(s) | 296 |
| BfaI | CTAG | 1 cut(s) | 62 |
| BfmI | CTRYAG | 1 cut(s) | 84 |
| BisI | GCNGC | 3 cut(s) | 111, 114, 587 |
| BlsI | GCNGC | 3 cut(s) | 112, 115, 588 |
| Bme1390I | CCNGG | 4 cut(s) | 177, 241, 547, 583 |
| Bme18I | GGWCC | 2 cut(s) | 76, 501 |
| BmeT110I | CYCGRG | 3 cut(s) | 93, 257, 394 |
| BmgT120I | GGNCC | 7 cut(s) | 76, 100, 170, 409, 456, 501, 544 |
| BmiI | GGNNCC | 5 cut(s) | 15, 206, 383, 410, 503 |
| BmrFI | CCNGG | 4 cut(s) | 177, 241, 547, 583 |
| BmsI | GCATC | 2 cut(s) | 97, 418 |
| BpuMI | CCSGG | 4 cut(s) | 177, 241, 547, 583 |
| BsaI | GGTCTC | 1 cut(s) | 296 |
| BsaJI | CCNNGG | 2 cut(s) | 92, 581 |
| BsaWI | WCCGGW | 2 cut(s) | 137, 378 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 33, 63 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 38, 137, 469 |
| BseAI | TCCGGA | 2 cut(s) | 137, 378 |
| BseDI | CCNNGG | 2 cut(s) | 92, 581 |
| BseGI | GGATG | 3 cut(s) | 205, 433, 459 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 38, 137, 469 |
| BseRI | GAGGAG | 1 cut(s) | 108 |
| BseXI | GCAGC | 1 cut(s) | 97 |
| Bsh1236I | CGCG | 3 cut(s) | 252, 416, 438 |
| Bsh1285I | CGRYCG | 1 cut(s) | 368 |
| BshFI | GGCC | 5 cut(s) | 101, 171, 411, 458, 545 |
| BsiEI | CGRYCG | 1 cut(s) | 368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 258 |
| BsiHKCI | CYCGRG | 3 cut(s) | 93, 257, 394 |
| BsiSI | CCGG | 7 cut(s) | 68, 138, 176, 240, 379, 547, 583 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 38, 137, 469 |
| BsmAI | GTCTC | 1 cut(s) | 296 |
| BsnI | GGCC | 5 cut(s) | 101, 171, 411, 458, 545 |
| Bso31I | GGTCTC | 1 cut(s) | 296 |
| BsoBI | CYCGRG | 3 cut(s) | 93, 257, 394 |
| Bsp1286I | GDGCHC | 4 cut(s) | 207, 225, 258, 401 |
| Bsp13I | TCCGGA | 2 cut(s) | 137, 378 |
| Bsp143I | GATC | 3 cut(s) | 13, 451, 480 |
| Bsp68I | TCGCGA | 1 cut(s) | 438 |
| BspACI | CCGC | 6 cut(s) | 74, 114, 348, 368, 478, 536 |
| BspANI | GGCC | 5 cut(s) | 101, 171, 411, 458, 545 |
| BspEI | TCCGGA | 2 cut(s) | 137, 378 |
| BspFNI | CGCG | 3 cut(s) | 252, 416, 438 |
| BspLI | GGNNCC | 5 cut(s) | 15, 206, 383, 410, 503 |
| BspPI | GGATC | 3 cut(s) | 8, 21, 488 |
| BspTNI | GGTCTC | 1 cut(s) | 296 |
| BsrBI | CCGCTC | 2 cut(s) | 116, 348 |
| BssECI | CCNNGG | 2 cut(s) | 92, 581 |
| BssMI | GATC | 3 cut(s) | 13, 451, 480 |
| BssSI | CACGAG | 3 cut(s) | 125, 218, 284 |
| Bst2BI | CACGAG | 3 cut(s) | 125, 218, 284 |
| BstC8I | GCNNGC | 2 cut(s) | 254, 391 |
| BstF5I | GGATG | 3 cut(s) | 205, 433, 459 |
| BstFNI | CGCG | 3 cut(s) | 252, 416, 438 |
| BstHHI | GCGC | 1 cut(s) | 418 |
| BstKTI | GATC | 3 cut(s) | 16, 454, 483 |
| BstMAI | GTCTC | 1 cut(s) | 296 |
| BstMBI | GATC | 3 cut(s) | 13, 451, 480 |
| BstMCI | CGRYCG | 1 cut(s) | 368 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 26, 80, 107, 390, 484, 542 |
| BstSCI | CCNGG | 4 cut(s) | 175, 239, 545, 581 |
| BstSFI | CTRYAG | 1 cut(s) | 84 |
| BstUI | CGCG | 3 cut(s) | 252, 416, 438 |
| BstV1I | GCAGC | 1 cut(s) | 97 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BsuRI | GGCC | 5 cut(s) | 101, 171, 411, 458, 545 |
| BtsCI | GGATG | 3 cut(s) | 205, 433, 459 |
| BtuMI | TCGCGA | 1 cut(s) | 438 |
| Cac8I | GCNNGC | 2 cut(s) | 254, 391 |
| CfoI | GCGC | 1 cut(s) | 418 |
| Cfr13I | GGNCC | 7 cut(s) | 76, 100, 170, 409, 456, 501, 544 |
| CpoI | CGGWCCG | 1 cut(s) | 76 |
| Csp6I | GTAC | 1 cut(s) | 248 |
| CspI | CGGWCCG | 1 cut(s) | 76 |
| CviAII | CATG | 1 cut(s) | 26 |
| CviQI | GTAC | 1 cut(s) | 248 |
| DpnI | GATC | 3 cut(s) | 15, 453, 482 |
| DpnII | GATC | 3 cut(s) | 13, 451, 480 |
| Ecl136II | GAGCTC | 1 cut(s) | 256 |
| Eco24I | GRGCYC | 4 cut(s) | 207, 225, 258, 401 |
| Eco31I | GGTCTC | 1 cut(s) | 296 |
| Eco47I | GGWCC | 2 cut(s) | 76, 501 |
| Eco53kI | GAGCTC | 1 cut(s) | 256 |
| Eco88I | CYCGRG | 3 cut(s) | 93, 257, 394 |
| EcoICRI | GAGCTC | 1 cut(s) | 256 |
| EcoO109I | RGGNCCY | 1 cut(s) | 409 |
| EcoT38I | GRGCYC | 4 cut(s) | 207, 225, 258, 401 |
| FaeI | CATG | 1 cut(s) | 29 |
| FaiI | YATR | 4 cut(s) | 27, 86, 185, 322 |
| FatI | CATG | 1 cut(s) | 25 |
| Fnu4HI | GCNGC | 3 cut(s) | 111, 114, 587 |
| FokI | GGATG | 3 cut(s) | 212, 440, 446 |
| FriOI | GRGCYC | 4 cut(s) | 207, 225, 258, 401 |
| Fsp4HI | GCNGC | 3 cut(s) | 111, 114, 587 |
| FspBI | CTAG | 1 cut(s) | 62 |
| GlaI | GCGC | 1 cut(s) | 417 |
| GluI | GCNGC | 3 cut(s) | 111, 114, 587 |
| HaeIII | GGCC | 5 cut(s) | 101, 171, 411, 458, 545 |
| HapII | CCGG | 7 cut(s) | 68, 138, 176, 240, 379, 547, 583 |
| HhaI | GCGC | 1 cut(s) | 418 |
| Hin1II | CATG | 1 cut(s) | 29 |
| Hin6I | GCGC | 1 cut(s) | 416 |
| HinP1I | GCGC | 1 cut(s) | 416 |
| HinfI | GANTC | 2 cut(s) | 7, 213 |
| HpaII | CCGG | 7 cut(s) | 68, 138, 176, 240, 379, 547, 583 |
| HphI | GGTGA | 5 cut(s) | 16, 61, 304, 485, 550 |
| Hpy166II | GTNNAC | 2 cut(s) | 52, 248 |
| Hpy188I | TCNGA | 2 cut(s) | 345, 501 |
| Hpy188III | TCNNGA | 7 cut(s) | 11, 32, 95, 138, 162, 379, 437 |
| Hpy8I | GTNNAC | 2 cut(s) | 52, 248 |
| HpyAV | CCTTC | 3 cut(s) | 38, 144, 506 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 26, 80, 107, 390, 484, 542 |
| Hsp92II | CATG | 1 cut(s) | 29 |
| HspAI | GCGC | 1 cut(s) | 416 |
| Kpn2I | TCCGGA | 2 cut(s) | 137, 378 |
| Kzo9I | GATC | 3 cut(s) | 13, 451, 480 |
| LmnI | GCTCC | 5 cut(s) | 34, 121, 210, 381, 573 |
| LpnPI | CCDG | 8 cut(s) | 30, 81, 151, 189, 253, 392, 455, 560 |
| Lsp1109I | GCAGC | 1 cut(s) | 97 |
| LweI | GCATC | 2 cut(s) | 97, 418 |
| MaeI | CTAG | 1 cut(s) | 62 |
| MaeIII | GTNAC | 1 cut(s) | 538 |
| MalI | GATC | 3 cut(s) | 15, 453, 482 |
| MbiI | CCGCTC | 2 cut(s) | 116, 348 |
| MboI | GATC | 3 cut(s) | 13, 451, 480 |
| MboII | GAAGA | 3 cut(s) | 269, 332, 572 |
| MfeI | CAATTG | 1 cut(s) | 527 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MhlI | GDGCHC | 4 cut(s) | 207, 225, 258, 401 |
| MluCI | AATT | 2 cut(s) | 308, 527 |
| MlyI | GAGTC | 1 cut(s) | 207 |
| MmeI | TCCRAC | 1 cut(s) | 232 |
| MnlI | CCTC | 8 cut(s) | 91, 102, 129, 141, 183, 189, 422, 576 |
| MroI | TCCGGA | 2 cut(s) | 137, 378 |
| MseI | TTAA | 2 cut(s) | 269, 353 |
| MspI | CCGG | 7 cut(s) | 68, 138, 176, 240, 379, 547, 583 |
| MspR9I | CCNGG | 4 cut(s) | 177, 241, 547, 583 |
| MunI | CAATTG | 1 cut(s) | 527 |
| MvnI | CGCG | 3 cut(s) | 252, 416, 438 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 26, 80, 107, 390, 484, 542 |
| NciI | CCSGG | 4 cut(s) | 177, 241, 547, 583 |
| NdeII | GATC | 3 cut(s) | 13, 451, 480 |
| NlaIII | CATG | 1 cut(s) | 29 |
| NlaIV | GGNNCC | 5 cut(s) | 15, 206, 383, 410, 503 |
| NmeAIII | GCCGAG | 1 cut(s) | 410 |
| NmuCI | GTSAC | 1 cut(s) | 538 |
| NruI | TCGCGA | 1 cut(s) | 438 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 100, 286 |
| PfeI | GAWTC | 1 cut(s) | 7 |
| PfoI | TCCNGGA | 1 cut(s) | 175 |
| PkrI | GCNGC | 3 cut(s) | 112, 115, 588 |
| PleI | GAGTC | 1 cut(s) | 207 |
| PpsI | GAGTC | 1 cut(s) | 207 |
| PshBI | ATTAAT | 1 cut(s) | 353 |
| PsiI | TTATAA | 1 cut(s) | 185 |
| Psp124BI | GAGCTC | 1 cut(s) | 258 |
| PspN4I | GGNNCC | 5 cut(s) | 15, 206, 383, 410, 503 |
| PspPI | GGNCC | 7 cut(s) | 76, 100, 170, 409, 456, 501, 544 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| RruI | TCGCGA | 1 cut(s) | 438 |
| RsaI | GTAC | 1 cut(s) | 249 |
| RsaNI | GTAC | 1 cut(s) | 248 |
| Rsr2I | CGGWCCG | 1 cut(s) | 76 |
| RsrII | CGGWCCG | 1 cut(s) | 76 |
| SacI | GAGCTC | 1 cut(s) | 258 |
| SaqAI | TTAA | 2 cut(s) | 269, 353 |
| SatI | GCNGC | 3 cut(s) | 111, 114, 587 |
| Sau3AI | GATC | 3 cut(s) | 13, 451, 480 |
| Sau96I | GGNCC | 7 cut(s) | 76, 100, 170, 409, 456, 501, 544 |
| SchI | GAGTC | 1 cut(s) | 207 |
| ScrFI | CCNGG | 4 cut(s) | 177, 241, 547, 583 |
| SduI | GDGCHC | 4 cut(s) | 207, 225, 258, 401 |
| SetI | ASST | 7 cut(s) | 258, 330, 395, 444, 498, 519, 568 |
| SfaNI | GCATC | 2 cut(s) | 97, 418 |
| SfcI | CTRYAG | 1 cut(s) | 84 |
| SinI | GGWCC | 2 cut(s) | 76, 501 |
| Sse9I | AATT | 2 cut(s) | 308, 527 |
| SsiI | CCGC | 6 cut(s) | 74, 114, 348, 368, 478, 536 |
| SspMI | CTAG | 1 cut(s) | 62 |
| SstI | GAGCTC | 1 cut(s) | 258 |
| StyD4I | CCNGG | 4 cut(s) | 175, 239, 545, 581 |
| TaqI | TCGA | 1 cut(s) | 163 |
| TasI | AATT | 2 cut(s) | 308, 527 |
| TauI | GCSGC | 1 cut(s) | 116 |
| TfiI | GAWTC | 1 cut(s) | 7 |
| Tru1I | TTAA | 2 cut(s) | 269, 353 |
| Tru9I | TTAA | 2 cut(s) | 269, 353 |
| TseFI | GTSAC | 1 cut(s) | 538 |
| TseI | GCWGC | 2 cut(s) | 110, 586 |
| Tsp45I | GTSAC | 1 cut(s) | 538 |
| TspDTI | ATGAA | 1 cut(s) | 204 |
| TspGWI | ACGGA | 4 cut(s) | 68, 157, 440, 586 |
| VpaK11BI | GGWCC | 2 cut(s) | 76, 501 |
| VspI | ATTAAT | 1 cut(s) | 353 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XspI | CTAG | 1 cut(s) | 62 |