Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 264 |
| Acc36I | ACCTGC | 1 cut(s) | 362 |
| AccB1I | GGYRCC | 1 cut(s) | 154 |
| AccII | CGCG | 5 cut(s) | 160, 311, 346, 414, 640 |
| AccIII | TCCGGA | 1 cut(s) | 6 |
| AciI | CCGC | 5 cut(s) | 79, 158, 615, 638, 640 |
| AcoI | YGGCCR | 4 cut(s) | 293, 354, 490, 565 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 416, 545, 639 |
| AflIII | ACRYGT | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 238, 351 |
| AluBI | AGCT | 3 cut(s) | 47, 319, 630 |
| AluI | AGCT | 3 cut(s) | 47, 319, 630 |
| Alw26I | GTCTC | 1 cut(s) | 100 |
| Aor13HI | TCCGGA | 1 cut(s) | 6 |
| AoxI | GGCC | 6 cut(s) | 148, 196, 293, 354, 490, 565 |
| ApaI | GGGCCC | 1 cut(s) | 152 |
| ApeKI | GCWGC | 4 cut(s) | 47, 368, 437, 627 |
| AspLEI | GCGC | 3 cut(s) | 265, 311, 346 |
| AspS9I | GGNCC | 4 cut(s) | 148, 149, 223, 234 |
| AsuC2I | CCSGG | 1 cut(s) | 152 |
| AsuHPI | GGTGA | 1 cut(s) | 560 |
| AvaII | GGWCC | 2 cut(s) | 223, 234 |
| BaeGI | GKGCMC | 1 cut(s) | 152 |
| BalI | TGGCCA | 4 cut(s) | 295, 356, 492, 567 |
| BanI | GGYRCC | 1 cut(s) | 154 |
| BanII | GRGCYC | 2 cut(s) | 152, 555 |
| BbvI | GCAGC | 4 cut(s) | 34, 380, 424, 639 |
| BccI | CCATC | 6 cut(s) | 216, 304, 410, 539, 548, 598 |
| BceAI | ACGGC | 2 cut(s) | 211, 615 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 254, 288 |
| BciT130I | CCWGG | 2 cut(s) | 240, 353 |
| BcnI | CCSGG | 1 cut(s) | 152 |
| BcoDI | GTCTC | 1 cut(s) | 100 |
| BfuAI | ACCTGC | 1 cut(s) | 362 |
| BisI | GCNGC | 5 cut(s) | 48, 369, 438, 616, 628 |
| BlsI | GCNGC | 5 cut(s) | 49, 370, 439, 617, 629 |
| Bme1390I | CCNGG | 3 cut(s) | 152, 240, 353 |
| Bme18I | GGWCC | 2 cut(s) | 223, 234 |
| BmgT120I | GGNCC | 4 cut(s) | 148, 149, 223, 234 |
| BmiI | GGNNCC | 4 cut(s) | 64, 150, 156, 236 |
| BmrFI | CCNGG | 3 cut(s) | 152, 240, 353 |
| BmsI | GCATC | 1 cut(s) | 64 |
| BpmI | CTGGAG | 1 cut(s) | 261 |
| BpuMI | CCSGG | 1 cut(s) | 152 |
| Bsa29I | ATCGAT | 1 cut(s) | 543 |
| BsaBI | GATNNNNATC | 1 cut(s) | 420 |
| BsaI | GGTCTC | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 3 cut(s) | 238, 597, 638 |
| BsaWI | WCCGGW | 3 cut(s) | 6, 65, 220 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 416, 545, 639 |
| Bse1I | ACTGG | 5 cut(s) | 296, 365, 535, 613, 669 |
| Bse3DI | GCAATG | 1 cut(s) | 671 |
| Bse8I | GATNNNNATC | 1 cut(s) | 420 |
| BseAI | TCCGGA | 1 cut(s) | 6 |
| BseBI | CCWGG | 2 cut(s) | 240, 353 |
| BseCI | ATCGAT | 1 cut(s) | 543 |
| BseDI | CCNNGG | 3 cut(s) | 238, 597, 638 |
| BseGI | GGATG | 1 cut(s) | 296 |
| BseJI | GATNNNNATC | 1 cut(s) | 420 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 416, 545, 639 |
| BseMI | GCAATG | 1 cut(s) | 671 |
| BseMII | CTCAG | 1 cut(s) | 133 |
| BseNI | ACTGG | 5 cut(s) | 296, 365, 535, 613, 669 |
| BseSI | GKGCMC | 1 cut(s) | 152 |
| BseXI | GCAGC | 4 cut(s) | 34, 380, 424, 639 |
| Bsh1236I | CGCG | 5 cut(s) | 160, 311, 346, 414, 640 |
| BshFI | GGCC | 6 cut(s) | 150, 198, 295, 356, 492, 567 |
| BshNI | GGYRCC | 1 cut(s) | 154 |
| BshVI | ATCGAT | 1 cut(s) | 543 |
| BsiSI | CCGG | 4 cut(s) | 7, 66, 152, 221 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 416, 545, 639 |
| BsmAI | GTCTC | 1 cut(s) | 100 |
| BsnI | GGCC | 6 cut(s) | 150, 198, 295, 356, 492, 567 |
| Bso31I | GGTCTC | 1 cut(s) | 100 |
| Bsp120I | GGGCCC | 1 cut(s) | 148 |
| Bsp1286I | GDGCHC | 2 cut(s) | 152, 555 |
| Bsp13I | TCCGGA | 1 cut(s) | 6 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| Bsp68I | TCGCGA | 1 cut(s) | 414 |
| BspACI | CCGC | 5 cut(s) | 79, 158, 615, 638, 640 |
| BspANI | GGCC | 6 cut(s) | 150, 198, 295, 356, 492, 567 |
| BspCNI | CTCAG | 1 cut(s) | 132 |
| BspDI | ATCGAT | 1 cut(s) | 543 |
| BspEI | TCCGGA | 1 cut(s) | 6 |
| BspFNI | CGCG | 5 cut(s) | 160, 311, 346, 414, 640 |
| BspLI | GGNNCC | 4 cut(s) | 64, 150, 156, 236 |
| BspMI | ACCTGC | 1 cut(s) | 362 |
| BspT107I | GGYRCC | 1 cut(s) | 154 |
| BspTNI | GGTCTC | 1 cut(s) | 100 |
| BsrDI | GCAATG | 1 cut(s) | 671 |
| BsrI | ACTGG | 5 cut(s) | 296, 365, 535, 613, 669 |
| BssECI | CCNNGG | 3 cut(s) | 238, 597, 638 |
| BssMI | GATC | 1 cut(s) | 3 |
| Bst2UI | CCWGG | 2 cut(s) | 240, 353 |
| BstC8I | GCNNGC | 4 cut(s) | 52, 79, 342, 428 |
| BstDEI | CTNAG | 2 cut(s) | 119, 623 |
| BstDSI | CCRYGG | 2 cut(s) | 597, 638 |
| BstF5I | GGATG | 1 cut(s) | 296 |
| BstFNI | CGCG | 5 cut(s) | 160, 311, 346, 414, 640 |
| BstHHI | GCGC | 3 cut(s) | 265, 311, 346 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMAI | GTCTC | 1 cut(s) | 100 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 121, 411, 559, 624 |
| BstNI | CCWGG | 2 cut(s) | 240, 353 |
| BstNSI | RCATGY | 1 cut(s) | 140 |
| BstSCI | CCNGG | 3 cut(s) | 150, 238, 351 |
| BstSLI | GKGCMC | 1 cut(s) | 152 |
| BstUI | CGCG | 5 cut(s) | 160, 311, 346, 414, 640 |
| BstV1I | GCAGC | 4 cut(s) | 34, 380, 424, 639 |
| Bsu15I | ATCGAT | 1 cut(s) | 543 |
| BsuRI | GGCC | 6 cut(s) | 150, 198, 295, 356, 492, 567 |
| BsuTUI | ATCGAT | 1 cut(s) | 543 |
| BtgI | CCRYGG | 2 cut(s) | 597, 638 |
| BtgZI | GCGATG | 1 cut(s) | 429 |
| BtsCI | GGATG | 1 cut(s) | 296 |
| BtsI | GCAGTG | 1 cut(s) | 110 |
| BtsIMutI | CAGTG | 1 cut(s) | 110 |
| BtuMI | TCGCGA | 1 cut(s) | 414 |
| BveI | ACCTGC | 1 cut(s) | 362 |
| Cac8I | GCNNGC | 4 cut(s) | 52, 79, 342, 428 |
| CfoI | GCGC | 3 cut(s) | 265, 311, 346 |
| Cfr13I | GGNCC | 4 cut(s) | 148, 149, 223, 234 |
| Cfr42I | CCGCGG | 1 cut(s) | 641 |
| ClaI | ATCGAT | 1 cut(s) | 543 |
| CseI | GACGC | 1 cut(s) | 188 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CviAII | CATG | 2 cut(s) | 137, 563 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DdeI | CTNAG | 2 cut(s) | 119, 623 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| EaeI | YGGCCR | 4 cut(s) | 293, 354, 490, 565 |
| Eco24I | GRGCYC | 2 cut(s) | 152, 555 |
| Eco31I | GGTCTC | 1 cut(s) | 100 |
| Eco32I | GATATC | 1 cut(s) | 481 |
| Eco47I | GGWCC | 2 cut(s) | 223, 234 |
| EcoO109I | RGGNCCY | 1 cut(s) | 234 |
| EcoRII | CCWGG | 2 cut(s) | 238, 351 |
| EcoRV | GATATC | 1 cut(s) | 481 |
| EcoT38I | GRGCYC | 2 cut(s) | 152, 555 |
| FaeI | CATG | 2 cut(s) | 140, 566 |
| FaiI | YATR | 4 cut(s) | 87, 138, 397, 564 |
| FatI | CATG | 2 cut(s) | 136, 562 |
| FauI | CCCGC | 1 cut(s) | 86 |
| Fnu4HI | GCNGC | 5 cut(s) | 48, 369, 438, 616, 628 |
| FokI | GGATG | 1 cut(s) | 283 |
| FriOI | GRGCYC | 2 cut(s) | 152, 555 |
| Fsp4HI | GCNGC | 5 cut(s) | 48, 369, 438, 616, 628 |
| FspI | TGCGCA | 1 cut(s) | 264 |
| GlaI | GCGC | 3 cut(s) | 264, 310, 345 |
| GluI | GCNGC | 5 cut(s) | 48, 369, 438, 616, 628 |
| GsuI | CTGGAG | 1 cut(s) | 261 |
| HaeIII | GGCC | 6 cut(s) | 150, 198, 295, 356, 492, 567 |
| HapII | CCGG | 4 cut(s) | 7, 66, 152, 221 |
| HgaI | GACGC | 1 cut(s) | 188 |
| HhaI | GCGC | 3 cut(s) | 265, 311, 346 |
| Hin1II | CATG | 2 cut(s) | 140, 566 |
| Hin6I | GCGC | 3 cut(s) | 263, 309, 344 |
| HinP1I | GCGC | 3 cut(s) | 263, 309, 344 |
| HinfI | GANTC | 1 cut(s) | 575 |
| HpaII | CCGG | 4 cut(s) | 7, 66, 152, 221 |
| HphI | GGTGA | 1 cut(s) | 560 |
| Hpy188I | TCNGA | 4 cut(s) | 143, 230, 485, 580 |
| Hpy188III | TCNNGA | 6 cut(s) | 7, 23, 103, 173, 413, 682 |
| Hpy99I | CGWCG | 2 cut(s) | 182, 316 |
| HpyAV | CCTTC | 3 cut(s) | 225, 416, 451 |
| HpyCH4V | TGCA | 2 cut(s) | 562, 661 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 121, 411, 559, 624 |
| HpyF3I | CTNAG | 2 cut(s) | 119, 623 |
| Hsp92II | CATG | 2 cut(s) | 140, 566 |
| HspAI | GCGC | 3 cut(s) | 263, 309, 344 |
| Kpn2I | TCCGGA | 1 cut(s) | 6 |
| KspI | CCGCGG | 1 cut(s) | 641 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LmnI | GCTCC | 2 cut(s) | 316, 635 |
| Lsp1109I | GCAGC | 4 cut(s) | 34, 380, 424, 639 |
| LweI | GCATC | 1 cut(s) | 64 |
| MaeIII | GTNAC | 1 cut(s) | 502 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 1 cut(s) | 41 |
| MhlI | GDGCHC | 2 cut(s) | 152, 555 |
| MlsI | TGGCCA | 4 cut(s) | 295, 356, 492, 567 |
| MluCI | AATT | 2 cut(s) | 69, 569 |
| MluNI | TGGCCA | 4 cut(s) | 295, 356, 492, 567 |
| MmeI | TCCRAC | 1 cut(s) | 675 |
| MnlI | CCTC | 6 cut(s) | 19, 200, 236, 269, 310, 420 |
| Mox20I | TGGCCA | 4 cut(s) | 295, 356, 492, 567 |
| MroI | TCCGGA | 1 cut(s) | 6 |
| MscI | TGGCCA | 4 cut(s) | 295, 356, 492, 567 |
| Msp20I | TGGCCA | 4 cut(s) | 295, 356, 492, 567 |
| MspA1I | CMGCKG | 2 cut(s) | 81, 640 |
| MspI | CCGG | 4 cut(s) | 7, 66, 152, 221 |
| MspR9I | CCNGG | 3 cut(s) | 152, 240, 353 |
| MvaI | CCWGG | 2 cut(s) | 240, 353 |
| MvnI | CGCG | 5 cut(s) | 160, 311, 346, 414, 640 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 121, 411, 559, 624 |
| NciI | CCSGG | 1 cut(s) | 152 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 2 cut(s) | 140, 566 |
| NlaIV | GGNNCC | 4 cut(s) | 64, 150, 156, 236 |
| NruI | TCGCGA | 1 cut(s) | 414 |
| NsbI | TGCGCA | 1 cut(s) | 264 |
| NspI | RCATGY | 1 cut(s) | 140 |
| PciI | ACATGT | 1 cut(s) | 136 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 337 |
| PfeI | GAWTC | 1 cut(s) | 575 |
| PkrI | GCNGC | 5 cut(s) | 49, 370, 439, 617, 629 |
| PpuMI | RGGWCCY | 1 cut(s) | 234 |
| PscI | ACATGT | 1 cut(s) | 136 |
| Psp5II | RGGWCCY | 1 cut(s) | 234 |
| Psp6I | CCWGG | 2 cut(s) | 238, 351 |
| PspGI | CCWGG | 2 cut(s) | 238, 351 |
| PspN4I | GGNNCC | 4 cut(s) | 64, 150, 156, 236 |
| PspOMI | GGGCCC | 1 cut(s) | 148 |
| PspPI | GGNCC | 4 cut(s) | 148, 149, 223, 234 |
| PspPPI | RGGWCCY | 1 cut(s) | 234 |
| RruI | TCGCGA | 1 cut(s) | 414 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| SacII | CCGCGG | 1 cut(s) | 641 |
| SatI | GCNGC | 5 cut(s) | 48, 369, 438, 616, 628 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| Sau96I | GGNCC | 4 cut(s) | 148, 149, 223, 234 |
| ScrFI | CCNGG | 3 cut(s) | 152, 240, 353 |
| SduI | GDGCHC | 2 cut(s) | 152, 555 |
| SetI | ASST | 7 cut(s) | 49, 205, 321, 354, 376, 476, 632 |
| SfaNI | GCATC | 1 cut(s) | 64 |
| Sfr303I | CCGCGG | 1 cut(s) | 641 |
| SgrBI | CCGCGG | 1 cut(s) | 641 |
| SinI | GGWCC | 2 cut(s) | 223, 234 |
| Sse9I | AATT | 2 cut(s) | 69, 569 |
| SsiI | CCGC | 5 cut(s) | 79, 158, 615, 638, 640 |
| StyD4I | CCNGG | 3 cut(s) | 150, 238, 351 |
| TaqI | TCGA | 3 cut(s) | 211, 274, 543 |
| TasI | AATT | 2 cut(s) | 69, 569 |
| TauI | GCSGC | 1 cut(s) | 618 |
| TfiI | GAWTC | 1 cut(s) | 575 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TseI | GCWGC | 4 cut(s) | 47, 368, 437, 627 |
| TspGWI | ACGGA | 1 cut(s) | 329 |
| TspRI | CASTG | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 2 cut(s) | 223, 234 |
| XceI | RCATGY | 1 cut(s) | 140 |