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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 298, 315 |
| AciI | CCGC | 1 cut(s) | 313 |
| AclWI | GGATC | 3 cut(s) | 34, 47, 400 |
| AdeI | CACNNNGTG | 1 cut(s) | 316 |
| AfaI | GTAC | 1 cut(s) | 191 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 271 |
| AgsI | TTSAA | 2 cut(s) | 59, 254 |
| AjnI | CCWGG | 1 cut(s) | 268 |
| AluBI | AGCT | 3 cut(s) | 118, 367, 412 |
| AluI | AGCT | 3 cut(s) | 118, 367, 412 |
| Alw21I | GWGCWC | 1 cut(s) | 369 |
| Alw26I | GTCTC | 1 cut(s) | 8 |
| AlwI | GGATC | 3 cut(s) | 34, 47, 400 |
| AoxI | GGCC | 2 cut(s) | 28, 400 |
| ApaI | GGGCCC | 1 cut(s) | 32 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 7, 39 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 90 |
| AspLEI | GCGC | 2 cut(s) | 298, 300 |
| AspS9I | GGNCC | 2 cut(s) | 28, 29 |
| AsuHPI | GGTGA | 2 cut(s) | 302, 383 |
| BaeGI | GKGCMC | 1 cut(s) | 32 |
| BamHI | GGATCC | 1 cut(s) | 39 |
| BanII | GRGCYC | 2 cut(s) | 32, 369 |
| BbsI | GAAGAC | 1 cut(s) | 93 |
| Bbv12I | GWGCWC | 1 cut(s) | 369 |
| BccI | CCATC | 1 cut(s) | 112 |
| BceAI | ACGGC | 1 cut(s) | 193 |
| BciT130I | CCWGG | 1 cut(s) | 270 |
| BcoDI | GTCTC | 1 cut(s) | 8 |
| BglII | AGATCT | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 1 cut(s) | 270 |
| BmgT120I | GGNCC | 2 cut(s) | 28, 29 |
| BmiI | GGNNCC | 3 cut(s) | 30, 41, 263 |
| BmrFI | CCNGG | 1 cut(s) | 270 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BpiI | GAAGAC | 1 cut(s) | 93 |
| BsaJI | CCNNGG | 1 cut(s) | 269 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 271 |
| Bse1I | ACTGG | 1 cut(s) | 22 |
| BseBI | CCWGG | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 269 |
| BseGI | GGATG | 2 cut(s) | 4, 155 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BseMII | CTCAG | 2 cut(s) | 342, 370 |
| BseNI | ACTGG | 1 cut(s) | 22 |
| BsePI | GCGCGC | 1 cut(s) | 296 |
| BseSI | GKGCMC | 1 cut(s) | 32 |
| Bsh1236I | CGCG | 2 cut(s) | 298, 315 |
| BshFI | GGCC | 2 cut(s) | 30, 402 |
| BsiHKAI | GWGCWC | 1 cut(s) | 369 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BsmAI | GTCTC | 1 cut(s) | 8 |
| BsnI | GGCC | 2 cut(s) | 30, 402 |
| Bsp120I | GGGCCC | 1 cut(s) | 28 |
| Bsp1286I | GDGCHC | 2 cut(s) | 32, 369 |
| Bsp143I | GATC | 4 cut(s) | 39, 217, 318, 405 |
| BspACI | CCGC | 1 cut(s) | 313 |
| BspANI | GGCC | 2 cut(s) | 30, 402 |
| BspCNI | CTCAG | 2 cut(s) | 341, 369 |
| BspFNI | CGCG | 2 cut(s) | 298, 315 |
| BspLI | GGNNCC | 3 cut(s) | 30, 41, 263 |
| BspPI | GGATC | 3 cut(s) | 34, 47, 400 |
| BsrI | ACTGG | 1 cut(s) | 22 |
| BssECI | CCNNGG | 1 cut(s) | 269 |
| BssHII | GCGCGC | 1 cut(s) | 296 |
| BssMI | GATC | 4 cut(s) | 39, 217, 318, 405 |
| Bst2UI | CCWGG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 1 cut(s) | 346 |
| BstC8I | GCNNGC | 1 cut(s) | 298 |
| BstDEI | CTNAG | 2 cut(s) | 328, 356 |
| BstF5I | GGATG | 2 cut(s) | 4, 155 |
| BstFNI | CGCG | 2 cut(s) | 298, 315 |
| BstHHI | GCGC | 2 cut(s) | 298, 300 |
| BstKTI | GATC | 4 cut(s) | 42, 220, 321, 408 |
| BstMAI | GTCTC | 1 cut(s) | 8 |
| BstMBI | GATC | 4 cut(s) | 39, 217, 318, 405 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 27, 302 |
| BstNI | CCWGG | 1 cut(s) | 270 |
| BstSCI | CCNGG | 1 cut(s) | 268 |
| BstSLI | GKGCMC | 1 cut(s) | 32 |
| BstUI | CGCG | 2 cut(s) | 298, 315 |
| BstV2I | GAAGAC | 1 cut(s) | 93 |
| BstX2I | RGATCY | 2 cut(s) | 39, 217 |
| BstYI | RGATCY | 2 cut(s) | 39, 217 |
| BsuRI | GGCC | 2 cut(s) | 30, 402 |
| BtsCI | GGATG | 2 cut(s) | 4, 155 |
| Cac8I | GCNNGC | 1 cut(s) | 298 |
| CfoI | GCGC | 2 cut(s) | 298, 300 |
| Cfr13I | GGNCC | 2 cut(s) | 28, 29 |
| Csp6I | GTAC | 1 cut(s) | 190 |
| CviJI | RGCY | 8 cut(s) | 30, 118, 133, 305, 340, 367, 402, 412 |
| CviKI_1 | RGCY | 8 cut(s) | 30, 118, 133, 305, 340, 367, 402, 412 |
| CviQI | GTAC | 1 cut(s) | 190 |
| DdeI | CTNAG | 2 cut(s) | 328, 356 |
| DpnI | GATC | 4 cut(s) | 41, 219, 320, 407 |
| DpnII | GATC | 4 cut(s) | 39, 217, 318, 405 |
| DraIII | CACNNNGTG | 1 cut(s) | 316 |
| Ecl136II | GAGCTC | 1 cut(s) | 367 |
| Eco24I | GRGCYC | 2 cut(s) | 32, 369 |
| Eco32I | GATATC | 1 cut(s) | 334 |
| Eco53kI | GAGCTC | 1 cut(s) | 367 |
| EcoICRI | GAGCTC | 1 cut(s) | 367 |
| EcoO109I | RGGNCCY | 1 cut(s) | 29 |
| EcoRII | CCWGG | 1 cut(s) | 268 |
| EcoRV | GATATC | 1 cut(s) | 334 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 2 cut(s) | 32, 369 |
| FaiI | YATR | 5 cut(s) | 136, 184, 285, 294, 430 |
| FokI | GGATG | 1 cut(s) | 142 |
| FriOI | GRGCYC | 2 cut(s) | 32, 369 |
| GlaI | GCGC | 2 cut(s) | 297, 299 |
| HaeIII | GGCC | 2 cut(s) | 30, 402 |
| HhaI | GCGC | 2 cut(s) | 298, 300 |
| Hin6I | GCGC | 2 cut(s) | 296, 298 |
| HinP1I | GCGC | 2 cut(s) | 296, 298 |
| HinfI | GANTC | 3 cut(s) | 55, 237, 275 |
| HphI | GGTGA | 2 cut(s) | 302, 383 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 217, 331 |
| Hpy188III | TCNNGA | 2 cut(s) | 13, 52 |
| HpyAV | CCTTC | 1 cut(s) | 275 |
| HpyCH4III | ACNGT | 1 cut(s) | 346 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 27, 302 |
| HpyF3I | CTNAG | 2 cut(s) | 328, 356 |
| HspAI | GCGC | 2 cut(s) | 296, 298 |
| Kzo9I | GATC | 4 cut(s) | 39, 217, 318, 405 |
| LweI | GCATC | 1 cut(s) | 13 |
| MaeIII | GTNAC | 1 cut(s) | 359 |
| MalI | GATC | 4 cut(s) | 41, 219, 320, 407 |
| MboI | GATC | 4 cut(s) | 39, 217, 318, 405 |
| MboII | GAAGA | 2 cut(s) | 98, 246 |
| MflI | RGATCY | 2 cut(s) | 39, 217 |
| MhlI | GDGCHC | 2 cut(s) | 32, 369 |
| MluCI | AATT | 1 cut(s) | 280 |
| MnlI | CCTC | 3 cut(s) | 53, 108, 255 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 90 |
| MspR9I | CCNGG | 1 cut(s) | 270 |
| MvaI | CCWGG | 1 cut(s) | 270 |
| MvnI | CGCG | 2 cut(s) | 298, 315 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 27, 302 |
| NdeII | GATC | 4 cut(s) | 39, 217, 318, 405 |
| NlaIV | GGNNCC | 3 cut(s) | 30, 41, 263 |
| NmeAIII | GCCGAG | 1 cut(s) | 107 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PauI | GCGCGC | 1 cut(s) | 296 |
| PdmI | GAANNNNTTC | 1 cut(s) | 90 |
| PfeI | GAWTC | 3 cut(s) | 55, 237, 275 |
| Psp124BI | GAGCTC | 1 cut(s) | 369 |
| Psp6I | CCWGG | 1 cut(s) | 268 |
| PspGI | CCWGG | 1 cut(s) | 268 |
| PspN4I | GGNNCC | 3 cut(s) | 30, 41, 263 |
| PspOMI | GGGCCC | 1 cut(s) | 28 |
| PspPI | GGNCC | 2 cut(s) | 28, 29 |
| PsuI | RGATCY | 2 cut(s) | 39, 217 |
| PteI | GCGCGC | 1 cut(s) | 296 |
| RsaI | GTAC | 1 cut(s) | 191 |
| RsaNI | GTAC | 1 cut(s) | 190 |
| SacI | GAGCTC | 1 cut(s) | 369 |
| Sau3AI | GATC | 4 cut(s) | 39, 217, 318, 405 |
| Sau96I | GGNCC | 2 cut(s) | 28, 29 |
| ScrFI | CCNGG | 1 cut(s) | 270 |
| SduI | GDGCHC | 2 cut(s) | 32, 369 |
| SetI | ASST | 6 cut(s) | 100, 120, 166, 195, 369, 414 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| Sse9I | AATT | 1 cut(s) | 280 |
| SsiI | CCGC | 1 cut(s) | 313 |
| SstI | GAGCTC | 1 cut(s) | 369 |
| StyD4I | CCNGG | 1 cut(s) | 268 |
| TaaI | ACNGT | 1 cut(s) | 346 |
| TaqI | TCGA | 3 cut(s) | 12, 45, 107 |
| TasI | AATT | 1 cut(s) | 280 |
| TfiI | GAWTC | 3 cut(s) | 55, 237, 275 |
| TspDTI | ATGAA | 1 cut(s) | 366 |
| XmnI | GAANNNNTTC | 1 cut(s) | 90 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |