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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 415 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 121 |
| AccII | CGCG | 7 cut(s) | 84, 141, 294, 296, 315, 317, 509 |
| AciI | CCGC | 6 cut(s) | 95, 139, 248, 313, 587, 635 |
| AclWI | GGATC | 5 cut(s) | 34, 47, 49, 62, 347 |
| AcoI | YGGCCR | 1 cut(s) | 636 |
| AcyI | GRCGYC | 1 cut(s) | 546 |
| AfaI | GTAC | 2 cut(s) | 152, 431 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 121, 479, 480 |
| AgsI | TTSAA | 2 cut(s) | 254, 655 |
| AjnI | CCWGG | 4 cut(s) | 42, 195, 268, 437 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 51, 83 |
| AluBI | AGCT | 2 cut(s) | 300, 367 |
| AluI | AGCT | 2 cut(s) | 300, 367 |
| Alw26I | GTCTC | 1 cut(s) | 8 |
| AlwI | GGATC | 5 cut(s) | 34, 47, 49, 62, 347 |
| AoxI | GGCC | 5 cut(s) | 28, 400, 470, 482, 636 |
| ApaI | GGGCCC | 1 cut(s) | 474 |
| ApeKI | GCWGC | 3 cut(s) | 97, 344, 668 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 614, 646 |
| AsiSI | GCGATCGC | 1 cut(s) | 292 |
| AspLEI | GCGC | 4 cut(s) | 275, 296, 317, 511 |
| AspS9I | GGNCC | 4 cut(s) | 29, 470, 471, 482 |
| AsuC2I | CCSGG | 1 cut(s) | 481 |
| BaeGI | GKGCMC | 1 cut(s) | 474 |
| BamHI | GGATCC | 2 cut(s) | 39, 54 |
| BanI | GGYRCC | 1 cut(s) | 415 |
| BanII | GRGCYC | 1 cut(s) | 474 |
| BbvI | GCAGC | 3 cut(s) | 84, 331, 655 |
| BccI | CCATC | 1 cut(s) | 647 |
| BceAI | ACGGC | 1 cut(s) | 533 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 614, 648 |
| BciT130I | CCWGG | 4 cut(s) | 44, 197, 270, 439 |
| BciVI | GTATCC | 1 cut(s) | 563 |
| BcnI | CCSGG | 1 cut(s) | 481 |
| BcoDI | GTCTC | 1 cut(s) | 8 |
| BfaI | CTAG | 1 cut(s) | 18 |
| BfmI | CTRYAG | 1 cut(s) | 283 |
| BfoI | RGCGCY | 1 cut(s) | 276 |
| BfuI | GTATCC | 1 cut(s) | 563 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 399 |
| BisI | GCNGC | 6 cut(s) | 98, 139, 313, 345, 636, 669 |
| BlsI | GCNGC | 6 cut(s) | 99, 140, 314, 346, 637, 670 |
| Bme1390I | CCNGG | 5 cut(s) | 44, 197, 270, 439, 481 |
| BmgT120I | GGNCC | 4 cut(s) | 29, 470, 471, 482 |
| BmiI | GGNNCC | 6 cut(s) | 31, 41, 56, 417, 472, 473 |
| BmrFI | CCNGG | 5 cut(s) | 44, 197, 270, 439, 481 |
| BmsI | GCATC | 2 cut(s) | 13, 195 |
| BpuMI | CCSGG | 1 cut(s) | 481 |
| BsaHI | GRCGYC | 1 cut(s) | 546 |
| BsaJI | CCNNGG | 1 cut(s) | 549 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 121, 479, 480 |
| Bse118I | RCCGGY | 1 cut(s) | 490 |
| BseBI | CCWGG | 4 cut(s) | 44, 197, 270, 439 |
| BseDI | CCNNGG | 1 cut(s) | 549 |
| BseGI | GGATG | 3 cut(s) | 4, 205, 625 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 121, 479, 480 |
| BseMII | CTCAG | 1 cut(s) | 552 |
| BseRI | GAGGAG | 1 cut(s) | 150 |
| BseSI | GKGCMC | 1 cut(s) | 474 |
| BseXI | GCAGC | 3 cut(s) | 84, 331, 655 |
| Bsh1236I | CGCG | 7 cut(s) | 84, 141, 294, 296, 315, 317, 509 |
| Bsh1285I | CGRYCG | 1 cut(s) | 292 |
| BshFI | GGCC | 5 cut(s) | 30, 402, 472, 484, 638 |
| BshNI | GGYRCC | 1 cut(s) | 415 |
| BsiEI | CGRYCG | 1 cut(s) | 292 |
| BsiSI | CCGG | 2 cut(s) | 480, 491 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 121, 479, 480 |
| BsmAI | GTCTC | 1 cut(s) | 8 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| BsnI | GGCC | 5 cut(s) | 30, 402, 472, 484, 638 |
| Bsp120I | GGGCCC | 1 cut(s) | 470 |
| Bsp1286I | GDGCHC | 1 cut(s) | 474 |
| Bsp1407I | TGTACA | 1 cut(s) | 429 |
| Bsp143I | GATC | 7 cut(s) | 39, 54, 289, 318, 339, 517, 684 |
| Bsp68I | TCGCGA | 1 cut(s) | 84 |
| BspACI | CCGC | 6 cut(s) | 95, 139, 248, 313, 587, 635 |
| BspANI | GGCC | 5 cut(s) | 30, 402, 472, 484, 638 |
| BspCNI | CTCAG | 1 cut(s) | 553 |
| BspFNI | CGCG | 7 cut(s) | 84, 141, 294, 296, 315, 317, 509 |
| BspLI | GGNNCC | 6 cut(s) | 31, 41, 56, 417, 472, 473 |
| BspPI | GGATC | 5 cut(s) | 34, 47, 49, 62, 347 |
| BspT107I | GGYRCC | 1 cut(s) | 415 |
| BsrFI | RCCGGY | 1 cut(s) | 490 |
| BsrGI | TGTACA | 1 cut(s) | 429 |
| BssAI | RCCGGY | 1 cut(s) | 490 |
| BssECI | CCNNGG | 1 cut(s) | 549 |
| BssMI | GATC | 7 cut(s) | 39, 54, 289, 318, 339, 517, 684 |
| BssNI | GRCGYC | 1 cut(s) | 546 |
| Bst2UI | CCWGG | 4 cut(s) | 44, 197, 270, 439 |
| BstACI | GRCGYC | 1 cut(s) | 546 |
| BstAUI | TGTACA | 1 cut(s) | 429 |
| BstC8I | GCNNGC | 5 cut(s) | 298, 391, 492, 507, 691 |
| BstDEI | CTNAG | 3 cut(s) | 356, 534, 561 |
| BstDSI | CCRYGG | 1 cut(s) | 549 |
| BstF5I | GGATG | 3 cut(s) | 4, 205, 625 |
| BstFNI | CGCG | 7 cut(s) | 84, 141, 294, 296, 315, 317, 509 |
| BstH2I | RGCGCY | 1 cut(s) | 276 |
| BstHHI | GCGC | 4 cut(s) | 275, 296, 317, 511 |
| BstKTI | GATC | 7 cut(s) | 42, 57, 292, 321, 342, 520, 687 |
| BstMAI | GTCTC | 1 cut(s) | 8 |
| BstMBI | GATC | 7 cut(s) | 39, 54, 289, 318, 339, 517, 684 |
| BstMCI | CGRYCG | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 27, 279, 399 |
| BstNI | CCWGG | 4 cut(s) | 44, 197, 270, 439 |
| BstSCI | CCNGG | 5 cut(s) | 42, 195, 268, 437, 479 |
| BstSFI | CTRYAG | 1 cut(s) | 283 |
| BstSLI | GKGCMC | 1 cut(s) | 474 |
| BstUI | CGCG | 7 cut(s) | 84, 141, 294, 296, 315, 317, 509 |
| BstV1I | GCAGC | 3 cut(s) | 84, 331, 655 |
| BstX2I | RGATCY | 2 cut(s) | 39, 54 |
| BstYI | RGATCY | 2 cut(s) | 39, 54 |
| BsuI | GTATCC | 1 cut(s) | 563 |
| BsuRI | GGCC | 5 cut(s) | 30, 402, 472, 484, 638 |
| BtgI | CCRYGG | 1 cut(s) | 549 |
| BtgZI | GCGATG | 1 cut(s) | 99 |
| BtsCI | GGATG | 3 cut(s) | 4, 205, 625 |
| BtuMI | TCGCGA | 1 cut(s) | 84 |
| Cac8I | GCNNGC | 5 cut(s) | 298, 391, 492, 507, 691 |
| CfoI | GCGC | 4 cut(s) | 275, 296, 317, 511 |
| Cfr10I | RCCGGY | 1 cut(s) | 490 |
| Cfr13I | GGNCC | 4 cut(s) | 29, 470, 471, 482 |
| CseI | GACGC | 1 cut(s) | 554 |
| Csp6I | GTAC | 2 cut(s) | 151, 430 |
| CviQI | GTAC | 2 cut(s) | 151, 430 |
| DdeI | CTNAG | 3 cut(s) | 356, 534, 561 |
| DpnI | GATC | 7 cut(s) | 41, 56, 291, 320, 341, 519, 686 |
| DpnII | GATC | 7 cut(s) | 39, 54, 289, 318, 339, 517, 684 |
| EaeI | YGGCCR | 1 cut(s) | 636 |
| EciI | GGCGGA | 1 cut(s) | 602 |
| Eco24I | GRGCYC | 1 cut(s) | 474 |
| Eco32I | GATATC | 1 cut(s) | 334 |
| EcoO109I | RGGNCCY | 1 cut(s) | 471 |
| EcoRII | CCWGG | 4 cut(s) | 42, 195, 268, 437 |
| EcoRV | GATATC | 1 cut(s) | 334 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 474 |
| FaiI | YATR | 5 cut(s) | 23, 211, 285, 447, 503 |
| Fnu4HI | GCNGC | 6 cut(s) | 98, 139, 313, 345, 636, 669 |
| FokI | GGATG | 2 cut(s) | 212, 632 |
| FriOI | GRGCYC | 1 cut(s) | 474 |
| Fsp4HI | GCNGC | 6 cut(s) | 98, 139, 313, 345, 636, 669 |
| FspBI | CTAG | 1 cut(s) | 18 |
| GlaI | GCGC | 4 cut(s) | 274, 295, 316, 510 |
| GluI | GCNGC | 6 cut(s) | 98, 139, 313, 345, 636, 669 |
| HaeII | RGCGCY | 1 cut(s) | 276 |
| HaeIII | GGCC | 5 cut(s) | 30, 402, 472, 484, 638 |
| HapII | CCGG | 2 cut(s) | 480, 491 |
| HgaI | GACGC | 1 cut(s) | 554 |
| HhaI | GCGC | 4 cut(s) | 275, 296, 317, 511 |
| Hin1I | GRCGYC | 1 cut(s) | 546 |
| Hin6I | GCGC | 4 cut(s) | 273, 294, 315, 509 |
| HinP1I | GCGC | 4 cut(s) | 273, 294, 315, 509 |
| HinfI | GANTC | 3 cut(s) | 237, 261, 465 |
| HpaII | CCGG | 2 cut(s) | 480, 491 |
| Hpy166II | GTNNAC | 1 cut(s) | 553 |
| Hpy188I | TCNGA | 4 cut(s) | 172, 331, 647, 698 |
| Hpy188III | TCNNGA | 4 cut(s) | 52, 83, 337, 524 |
| Hpy8I | GTNNAC | 1 cut(s) | 553 |
| HpyAV | CCTTC | 3 cut(s) | 275, 486, 560 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 27, 279, 399 |
| HpyF3I | CTNAG | 3 cut(s) | 356, 534, 561 |
| Hsp92I | GRCGYC | 1 cut(s) | 546 |
| HspAI | GCGC | 4 cut(s) | 273, 294, 315, 509 |
| KroI | GCCGGC | 1 cut(s) | 490 |
| KroNI | GCCGGC | 1 cut(s) | 492 |
| Kzo9I | GATC | 7 cut(s) | 39, 54, 289, 318, 339, 517, 684 |
| LmnI | GCTCC | 1 cut(s) | 379 |
| Lsp1109I | GCAGC | 3 cut(s) | 84, 331, 655 |
| LweI | GCATC | 2 cut(s) | 13, 195 |
| MaeI | CTAG | 1 cut(s) | 18 |
| MaeIII | GTNAC | 1 cut(s) | 359 |
| MalI | GATC | 7 cut(s) | 41, 56, 291, 320, 341, 519, 686 |
| MboI | GATC | 7 cut(s) | 39, 54, 289, 318, 339, 517, 684 |
| MboII | GAAGA | 6 cut(s) | 67, 246, 362, 512, 587, 634 |
| MfeI | CAATTG | 2 cut(s) | 410, 601 |
| MflI | RGATCY | 2 cut(s) | 39, 54 |
| MhlI | GDGCHC | 1 cut(s) | 474 |
| MluCI | AATT | 4 cut(s) | 395, 410, 601, 650 |
| MmeI | TCCRAC | 1 cut(s) | 587 |
| MnlI | CCTC | 6 cut(s) | 136, 171, 255, 435, 556, 609 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroNI | GCCGGC | 1 cut(s) | 490 |
| MseI | TTAA | 1 cut(s) | 612 |
| MslI | CAYNNNNRTG | 1 cut(s) | 680 |
| MspA1I | CMGCKG | 1 cut(s) | 97 |
| MspI | CCGG | 2 cut(s) | 480, 491 |
| MspR9I | CCNGG | 5 cut(s) | 44, 197, 270, 439, 481 |
| MunI | CAATTG | 2 cut(s) | 410, 601 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| MvaI | CCWGG | 4 cut(s) | 44, 197, 270, 439 |
| MvnI | CGCG | 7 cut(s) | 84, 141, 294, 296, 315, 317, 509 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 27, 279, 399 |
| NaeI | GCCGGC | 1 cut(s) | 492 |
| NciI | CCSGG | 1 cut(s) | 481 |
| NdeII | GATC | 7 cut(s) | 39, 54, 289, 318, 339, 517, 684 |
| NgoMIV | GCCGGC | 1 cut(s) | 490 |
| NlaIV | GGNNCC | 6 cut(s) | 31, 41, 56, 417, 472, 473 |
| NruI | TCGCGA | 1 cut(s) | 84 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PdiI | GCCGGC | 1 cut(s) | 492 |
| PfeI | GAWTC | 3 cut(s) | 237, 261, 465 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 121 |
| PfoI | TCCNGGA | 2 cut(s) | 42, 195 |
| PkrI | GCNGC | 6 cut(s) | 99, 140, 314, 346, 637, 670 |
| Ple19I | CGATCG | 1 cut(s) | 292 |
| Psp6I | CCWGG | 4 cut(s) | 42, 195, 268, 437 |
| PspGI | CCWGG | 4 cut(s) | 42, 195, 268, 437 |
| PspN4I | GGNNCC | 6 cut(s) | 31, 41, 56, 417, 472, 473 |
| PspOMI | GGGCCC | 1 cut(s) | 470 |
| PspPI | GGNCC | 4 cut(s) | 29, 470, 471, 482 |
| PsuI | RGATCY | 2 cut(s) | 39, 54 |
| PvuI | CGATCG | 1 cut(s) | 292 |
| RgaI | GCGATCGC | 1 cut(s) | 292 |
| RruI | TCGCGA | 1 cut(s) | 84 |
| RsaI | GTAC | 2 cut(s) | 152, 431 |
| RsaNI | GTAC | 2 cut(s) | 151, 430 |
| RseI | CAYNNNNRTG | 1 cut(s) | 680 |
| SaqAI | TTAA | 1 cut(s) | 612 |
| SatI | GCNGC | 6 cut(s) | 98, 139, 313, 345, 636, 669 |
| Sau3AI | GATC | 7 cut(s) | 39, 54, 289, 318, 339, 517, 684 |
| Sau96I | GGNCC | 4 cut(s) | 29, 470, 471, 482 |
| ScrFI | CCNGG | 5 cut(s) | 44, 197, 270, 439, 481 |
| SduI | GDGCHC | 1 cut(s) | 474 |
| SetI | ASST | 5 cut(s) | 152, 185, 247, 302, 369 |
| SfaAI | GCGATCGC | 1 cut(s) | 292 |
| SfaNI | GCATC | 2 cut(s) | 13, 195 |
| SfcI | CTRYAG | 1 cut(s) | 283 |
| SgfI | GCGATCGC | 1 cut(s) | 292 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 680 |
| Sse9I | AATT | 4 cut(s) | 395, 410, 601, 650 |
| SsiI | CCGC | 6 cut(s) | 95, 139, 248, 313, 587, 635 |
| SspI | AATATT | 1 cut(s) | 225 |
| SspMI | CTAG | 1 cut(s) | 18 |
| StyD4I | CCNGG | 5 cut(s) | 42, 195, 268, 437, 479 |
| TaqI | TCGA | 1 cut(s) | 678 |
| TasI | AATT | 4 cut(s) | 395, 410, 601, 650 |
| TatI | WGTACW | 1 cut(s) | 429 |
| TauI | GCSGC | 3 cut(s) | 141, 315, 638 |
| TfiI | GAWTC | 3 cut(s) | 237, 261, 465 |
| Tru1I | TTAA | 1 cut(s) | 612 |
| Tru9I | TTAA | 1 cut(s) | 612 |
| TseI | GCWGC | 3 cut(s) | 97, 344, 668 |
| TspDTI | ATGAA | 1 cut(s) | 529 |
| TspGWI | ACGGA | 2 cut(s) | 273, 570 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 121 |
| XspI | CTAG | 1 cut(s) | 18 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |