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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 231, 723 |
| Acc36I | ACCTGC | 1 cut(s) | 454 |
| Acc65I | GGTACC | 1 cut(s) | 442 |
| AccB1I | GGYRCC | 1 cut(s) | 442 |
| AccBSI | CCGCTC | 2 cut(s) | 174, 524 |
| AccII | CGCG | 8 cut(s) | 660, 789, 875, 881, 942, 1129, 1131, 1211 |
| AccIII | TCCGGA | 1 cut(s) | 245 |
| AclWI | GGATC | 4 cut(s) | 125, 173, 186, 458 |
| AcoI | YGGCCR | 3 cut(s) | 54, 61, 1035 |
| AcuI | CTGAAG | 2 cut(s) | 120, 126 |
| AcyI | GRCGYC | 1 cut(s) | 1167 |
| AfaI | GTAC | 2 cut(s) | 444, 663 |
| AfeI | AGCGCT | 2 cut(s) | 46, 327 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 297, 518, 589, 1147 |
| AflIII | ACRYGT | 1 cut(s) | 250 |
| AgsI | TTSAA | 2 cut(s) | 1025, 1100 |
| AjnI | CCWGG | 1 cut(s) | 638 |
| Alw21I | GWGCWC | 4 cut(s) | 90, 390, 763, 1191 |
| Alw26I | GTCTC | 3 cut(s) | 926, 969, 1113 |
| AlwI | GGATC | 4 cut(s) | 125, 173, 186, 458 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 98 |
| Ama87I | CYCGRG | 2 cut(s) | 626, 1055 |
| Aor13HI | TCCGGA | 1 cut(s) | 245 |
| Aor51HI | AGCGCT | 2 cut(s) | 46, 327 |
| AoxI | GGCC | 9 cut(s) | 54, 61, 555, 579, 807, 913, 1035, 1047, 1092 |
| AseI | ATTAAT | 1 cut(s) | 858 |
| Asp718I | GGTACC | 1 cut(s) | 442 |
| AspLEI | GCGC | 6 cut(s) | 19, 47, 328, 883, 1129, 1131 |
| AspS9I | GGNCC | 7 cut(s) | 240, 410, 556, 580, 725, 1005, 1048 |
| AsuC2I | CCSGG | 2 cut(s) | 392, 744 |
| AsuHPI | GGTGA | 3 cut(s) | 290, 496, 808 |
| AvaI | CYCGRG | 2 cut(s) | 626, 1055 |
| AvaII | GGWCC | 4 cut(s) | 240, 410, 725, 1005 |
| AxyI | CCTNAGG | 1 cut(s) | 573 |
| BamHI | GGATCC | 1 cut(s) | 178 |
| BanI | GGYRCC | 1 cut(s) | 442 |
| BanII | GRGCYC | 3 cut(s) | 363, 390, 763 |
| Bbv12I | GWGCWC | 4 cut(s) | 90, 390, 763, 1191 |
| BbvCI | CCTCAGC | 1 cut(s) | 417 |
| BccI | CCATC | 3 cut(s) | 569, 698, 769 |
| BceAI | ACGGC | 3 cut(s) | 18, 41, 1062 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1178, 1212 |
| BciT130I | CCWGG | 1 cut(s) | 640 |
| BcnI | CCSGG | 2 cut(s) | 392, 744 |
| BcoDI | GTCTC | 3 cut(s) | 926, 969, 1113 |
| BfaI | CTAG | 9 cut(s) | 27, 69, 320, 491, 644, 722, 888, 1088, 1145 |
| BfmI | CTRYAG | 1 cut(s) | 513 |
| BfoI | RGCGCY | 2 cut(s) | 48, 329 |
| BfuAI | ACCTGC | 1 cut(s) | 454 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1034 |
| BglII | AGATCT | 1 cut(s) | 822 |
| Bme1390I | CCNGG | 3 cut(s) | 392, 640, 744 |
| Bme18I | GGWCC | 4 cut(s) | 240, 410, 725, 1005 |
| BmeT110I | CYCGRG | 2 cut(s) | 626, 1055 |
| BmgT120I | GGNCC | 7 cut(s) | 240, 410, 556, 580, 725, 1005, 1048 |
| BmiI | GGNNCC | 7 cut(s) | 180, 444, 540, 558, 582, 1007, 1068 |
| BmrFI | CCNGG | 3 cut(s) | 392, 640, 744 |
| BmsI | GCATC | 1 cut(s) | 598 |
| Bpu10I | CCTNAGC | 4 cut(s) | 417, 762, 897, 1122 |
| BpuEI | CTTGAG | 1 cut(s) | 339 |
| BpuMI | CCSGG | 2 cut(s) | 392, 744 |
| BsaHI | GRCGYC | 1 cut(s) | 1167 |
| BsaJI | CCNNGG | 3 cut(s) | 51, 194, 910 |
| BsaWI | WCCGGW | 1 cut(s) | 245 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 513, 543 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 297, 518, 589, 1147 |
| Bse118I | RCCGGY | 1 cut(s) | 237 |
| Bse1I | ACTGG | 3 cut(s) | 64, 231, 467 |
| Bse21I | CCTNAGG | 1 cut(s) | 573 |
| Bse3DI | GCAATG | 2 cut(s) | 620, 1110 |
| BseAI | TCCGGA | 1 cut(s) | 245 |
| BseBI | CCWGG | 1 cut(s) | 640 |
| BseDI | CCNNGG | 3 cut(s) | 51, 194, 910 |
| BseGI | GGATG | 4 cut(s) | 211, 676, 709, 1189 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 297, 518, 589, 1147 |
| BseMI | GCAATG | 2 cut(s) | 620, 1110 |
| BseMII | CTCAG | 7 cut(s) | 408, 587, 776, 795, 911, 1124, 1136 |
| BseNI | ACTGG | 3 cut(s) | 64, 231, 467 |
| BsePI | GCGCGC | 1 cut(s) | 1127 |
| BseRI | GAGGAG | 1 cut(s) | 25 |
| BseX3I | CGGCCG | 1 cut(s) | 54 |
| BseYI | CCCAGC | 1 cut(s) | 1050 |
| Bsh1236I | CGCG | 8 cut(s) | 660, 789, 875, 881, 942, 1129, 1131, 1211 |
| Bsh1285I | CGRYCG | 5 cut(s) | 57, 396, 594, 873, 879 |
| BshFI | GGCC | 9 cut(s) | 56, 63, 557, 581, 809, 915, 1037, 1049, 1094 |
| BshNI | GGYRCC | 1 cut(s) | 442 |
| BsiEI | CGRYCG | 5 cut(s) | 57, 396, 594, 873, 879 |
| BsiHKAI | GWGCWC | 4 cut(s) | 90, 390, 763, 1191 |
| BsiHKCI | CYCGRG | 2 cut(s) | 626, 1055 |
| BsiSI | CCGG | 5 cut(s) | 238, 246, 392, 548, 743 |
| BslFI | GGGAC | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 297, 518, 589, 1147 |
| BsmAI | GTCTC | 3 cut(s) | 926, 969, 1113 |
| BsmFI | GGGAC | 1 cut(s) | 362 |
| BsnI | GGCC | 9 cut(s) | 56, 63, 557, 581, 809, 915, 1037, 1049, 1094 |
| BsoBI | CYCGRG | 2 cut(s) | 626, 1055 |
| Bsp1286I | GDGCHC | 5 cut(s) | 90, 363, 390, 763, 1191 |
| Bsp13I | TCCGGA | 1 cut(s) | 245 |
| Bsp143I | GATC | 5 cut(s) | 130, 178, 220, 463, 822 |
| Bsp19I | CCATGG | 1 cut(s) | 194 |
| Bsp68I | TCGCGA | 1 cut(s) | 942 |
| BspANI | GGCC | 9 cut(s) | 56, 63, 557, 581, 809, 915, 1037, 1049, 1094 |
| BspCNI | CTCAG | 7 cut(s) | 409, 586, 775, 796, 910, 1123, 1135 |
| BspEI | TCCGGA | 1 cut(s) | 245 |
| BspFNI | CGCG | 8 cut(s) | 660, 789, 875, 881, 942, 1129, 1131, 1211 |
| BspLI | GGNNCC | 7 cut(s) | 180, 444, 540, 558, 582, 1007, 1068 |
| BspMAI | CTGCAG | 1 cut(s) | 517 |
| BspMI | ACCTGC | 1 cut(s) | 454 |
| BspPI | GGATC | 4 cut(s) | 125, 173, 186, 458 |
| BspQI | GCTCTTC | 1 cut(s) | 271 |
| BspT107I | GGYRCC | 1 cut(s) | 442 |
| BsrBI | CCGCTC | 2 cut(s) | 174, 524 |
| BsrDI | GCAATG | 2 cut(s) | 620, 1110 |
| BsrFI | RCCGGY | 1 cut(s) | 237 |
| BsrI | ACTGG | 3 cut(s) | 64, 231, 467 |
| BssAI | RCCGGY | 1 cut(s) | 237 |
| BssECI | CCNNGG | 3 cut(s) | 51, 194, 910 |
| BssHII | GCGCGC | 1 cut(s) | 1127 |
| BssMI | GATC | 5 cut(s) | 130, 178, 220, 463, 822 |
| BssNI | GRCGYC | 1 cut(s) | 1167 |
| BssT1I | CCWWGG | 1 cut(s) | 194 |
| Bst2UI | CCWGG | 1 cut(s) | 640 |
| Bst4CI | ACNGT | 4 cut(s) | 142, 376, 436, 834 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 271 |
| BstACI | GRCGYC | 1 cut(s) | 1167 |
| BstDEI | CTNAG | 8 cut(s) | 417, 573, 762, 804, 897, 1110, 1117, 1122 |
| BstDSI | CCRYGG | 1 cut(s) | 194 |
| BstF5I | GGATG | 4 cut(s) | 211, 676, 709, 1189 |
| BstFNI | CGCG | 8 cut(s) | 660, 789, 875, 881, 942, 1129, 1131, 1211 |
| BstH2I | RGCGCY | 2 cut(s) | 48, 329 |
| BstHHI | GCGC | 6 cut(s) | 19, 47, 328, 883, 1129, 1131 |
| BstKTI | GATC | 5 cut(s) | 133, 181, 223, 466, 825 |
| BstMAI | GTCTC | 3 cut(s) | 926, 969, 1113 |
| BstMBI | GATC | 5 cut(s) | 130, 178, 220, 463, 822 |
| BstMCI | CGRYCG | 5 cut(s) | 57, 396, 594, 873, 879 |
| BstNI | CCWGG | 1 cut(s) | 640 |
| BstNSI | RCATGY | 1 cut(s) | 254 |
| BstSCI | CCNGG | 3 cut(s) | 390, 638, 742 |
| BstSFI | CTRYAG | 1 cut(s) | 513 |
| BstUI | CGCG | 8 cut(s) | 660, 789, 875, 881, 942, 1129, 1131, 1211 |
| BstX2I | RGATCY | 2 cut(s) | 178, 822 |
| BstYI | RGATCY | 2 cut(s) | 178, 822 |
| BstZI | CGGCCG | 1 cut(s) | 54 |
| Bsu36I | CCTNAGG | 1 cut(s) | 573 |
| BsuRI | GGCC | 9 cut(s) | 56, 63, 557, 581, 809, 915, 1037, 1049, 1094 |
| BtgI | CCRYGG | 1 cut(s) | 194 |
| BtsCI | GGATG | 4 cut(s) | 211, 676, 709, 1189 |
| BtsI | GCAGTG | 2 cut(s) | 522, 1047 |
| BtsIMutI | CAGTG | 4 cut(s) | 186, 522, 801, 1047 |
| BtuMI | TCGCGA | 1 cut(s) | 942 |
| BveI | ACCTGC | 1 cut(s) | 454 |
| CaiI | CAGNNNCTG | 1 cut(s) | 98 |
| CfoI | GCGC | 6 cut(s) | 19, 47, 328, 883, 1129, 1131 |
| Cfr10I | RCCGGY | 1 cut(s) | 237 |
| Cfr13I | GGNCC | 7 cut(s) | 240, 410, 556, 580, 725, 1005, 1048 |
| CseI | GACGC | 3 cut(s) | 623, 738, 1175 |
| Csp6I | GTAC | 2 cut(s) | 443, 662 |
| CviAII | CATG | 4 cut(s) | 21, 195, 251, 506 |
| CviQI | GTAC | 2 cut(s) | 443, 662 |
| DdeI | CTNAG | 8 cut(s) | 417, 573, 762, 804, 897, 1110, 1117, 1122 |
| DpnI | GATC | 5 cut(s) | 132, 180, 222, 465, 824 |
| DpnII | GATC | 5 cut(s) | 130, 178, 220, 463, 822 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 231, 723 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 231, 723 |
| EaeI | YGGCCR | 3 cut(s) | 54, 61, 1035 |
| EagI | CGGCCG | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 271 |
| EarI | CTCTTC | 2 cut(s) | 195, 271 |
| EciI | GGCGGA | 1 cut(s) | 742 |
| Ecl136II | GAGCTC | 2 cut(s) | 388, 761 |
| EclXI | CGGCCG | 1 cut(s) | 54 |
| Eco130I | CCWWGG | 1 cut(s) | 194 |
| Eco147I | AGGCCT | 1 cut(s) | 915 |
| Eco24I | GRGCYC | 3 cut(s) | 363, 390, 763 |
| Eco47I | GGWCC | 4 cut(s) | 240, 410, 725, 1005 |
| Eco47III | AGCGCT | 2 cut(s) | 46, 327 |
| Eco52I | CGGCCG | 1 cut(s) | 54 |
| Eco53kI | GAGCTC | 2 cut(s) | 388, 761 |
| Eco57I | CTGAAG | 2 cut(s) | 120, 126 |
| Eco81I | CCTNAGG | 1 cut(s) | 573 |
| Eco88I | CYCGRG | 2 cut(s) | 626, 1055 |
| EcoICRI | GAGCTC | 2 cut(s) | 388, 761 |
| EcoO109I | RGGNCCY | 2 cut(s) | 580, 725 |
| EcoRII | CCWGG | 1 cut(s) | 638 |
| EcoT14I | CCWWGG | 1 cut(s) | 194 |
| EcoT38I | GRGCYC | 3 cut(s) | 363, 390, 763 |
| ErhI | CCWWGG | 1 cut(s) | 194 |
| FaeI | CATG | 4 cut(s) | 24, 198, 254, 509 |
| FaiI | YATR | 7 cut(s) | 22, 196, 252, 482, 507, 689, 828 |
| FaqI | GGGAC | 1 cut(s) | 362 |
| FatI | CATG | 4 cut(s) | 20, 194, 250, 505 |
| FauI | CCCGC | 5 cut(s) | 302, 370, 387, 517, 1204 |
| FokI | GGATG | 4 cut(s) | 218, 663, 716, 1196 |
| FriOI | GRGCYC | 3 cut(s) | 363, 390, 763 |
| FspBI | CTAG | 9 cut(s) | 27, 69, 320, 491, 644, 722, 888, 1088, 1145 |
| GlaI | GCGC | 6 cut(s) | 18, 46, 327, 882, 1128, 1130 |
| GsaI | CCCAGC | 1 cut(s) | 1054 |
| HaeII | RGCGCY | 2 cut(s) | 48, 329 |
| HaeIII | GGCC | 9 cut(s) | 56, 63, 557, 581, 809, 915, 1037, 1049, 1094 |
| HapII | CCGG | 5 cut(s) | 238, 246, 392, 548, 743 |
| HgaI | GACGC | 3 cut(s) | 623, 738, 1175 |
| HhaI | GCGC | 6 cut(s) | 19, 47, 328, 883, 1129, 1131 |
| Hin1I | GRCGYC | 1 cut(s) | 1167 |
| Hin1II | CATG | 4 cut(s) | 24, 198, 254, 509 |
| Hin6I | GCGC | 6 cut(s) | 17, 45, 326, 881, 1127, 1129 |
| HinP1I | GCGC | 6 cut(s) | 17, 45, 326, 881, 1127, 1129 |
| HinfI | GANTC | 6 cut(s) | 110, 316, 332, 487, 494, 994 |
| HpaII | CCGG | 5 cut(s) | 238, 246, 392, 548, 743 |
| HphI | GGTGA | 3 cut(s) | 290, 496, 808 |
| Hpy166II | GTNNAC | 1 cut(s) | 816 |
| Hpy188I | TCNGA | 5 cut(s) | 9, 178, 974, 1016, 1113 |
| Hpy8I | GTNNAC | 1 cut(s) | 816 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 128 |
| HpyAV | CCTTC | 4 cut(s) | 254, 275, 645, 854 |
| HpyCH4III | ACNGT | 4 cut(s) | 142, 376, 436, 834 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 515, 920 |
| HpyF3I | CTNAG | 8 cut(s) | 417, 573, 762, 804, 897, 1110, 1117, 1122 |
| Hsp92I | GRCGYC | 1 cut(s) | 1167 |
| Hsp92II | CATG | 4 cut(s) | 24, 198, 254, 509 |
| HspAI | GCGC | 6 cut(s) | 17, 45, 326, 881, 1127, 1129 |
| Kpn2I | TCCGGA | 1 cut(s) | 245 |
| KpnI | GGTACC | 1 cut(s) | 446 |
| Kzo9I | GATC | 5 cut(s) | 130, 178, 220, 463, 822 |
| LguI | GCTCTTC | 1 cut(s) | 271 |
| LmnI | GCTCC | 5 cut(s) | 393, 514, 521, 622, 1150 |
| LweI | GCATC | 1 cut(s) | 598 |
| MaeI | CTAG | 9 cut(s) | 27, 69, 320, 491, 644, 722, 888, 1088, 1145 |
| MaeIII | GTNAC | 2 cut(s) | 834, 1042 |
| MalI | GATC | 5 cut(s) | 132, 180, 222, 465, 824 |
| MbiI | CCGCTC | 2 cut(s) | 174, 524 |
| MboI | GATC | 5 cut(s) | 130, 178, 220, 463, 822 |
| MboII | GAAGA | 5 cut(s) | 105, 119, 212, 258, 773 |
| MfeI | CAATTG | 1 cut(s) | 1031 |
| MflI | RGATCY | 2 cut(s) | 178, 822 |
| MhlI | GDGCHC | 5 cut(s) | 90, 363, 390, 763, 1191 |
| MluCI | AATT | 3 cut(s) | 39, 1031, 1171 |
| MlyI | GAGTC | 1 cut(s) | 503 |
| MroI | TCCGGA | 1 cut(s) | 245 |
| MseI | TTAA | 1 cut(s) | 858 |
| MslI | CAYNNNNRTG | 1 cut(s) | 606 |
| MspA1I | CMGCKG | 2 cut(s) | 149, 452 |
| MspI | CCGG | 5 cut(s) | 238, 246, 392, 548, 743 |
| MspR9I | CCNGG | 3 cut(s) | 392, 640, 744 |
| MunI | CAATTG | 1 cut(s) | 1031 |
| MvaI | CCWGG | 1 cut(s) | 640 |
| MvnI | CGCG | 8 cut(s) | 660, 789, 875, 881, 942, 1129, 1131, 1211 |
| NciI | CCSGG | 2 cut(s) | 392, 744 |
| NcoI | CCATGG | 1 cut(s) | 194 |
| NdeII | GATC | 5 cut(s) | 130, 178, 220, 463, 822 |
| NlaIII | CATG | 4 cut(s) | 24, 198, 254, 509 |
| NlaIV | GGNNCC | 7 cut(s) | 180, 444, 540, 558, 582, 1007, 1068 |
| NmeAIII | GCCGAG | 2 cut(s) | 32, 835 |
| NmuCI | GTSAC | 1 cut(s) | 1042 |
| NruI | TCGCGA | 1 cut(s) | 942 |
| NspI | RCATGY | 1 cut(s) | 254 |
| PaeR7I | CTCGAG | 1 cut(s) | 1055 |
| PauI | GCGCGC | 1 cut(s) | 1127 |
| PceI | AGGCCT | 1 cut(s) | 915 |
| PciI | ACATGT | 1 cut(s) | 250 |
| PciSI | GCTCTTC | 1 cut(s) | 271 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 790 |
| PfeI | GAWTC | 5 cut(s) | 110, 316, 332, 487, 994 |
| PleI | GAGTC | 1 cut(s) | 502 |
| PpsI | GAGTC | 1 cut(s) | 502 |
| PpuMI | RGGWCCY | 1 cut(s) | 725 |
| PscI | ACATGT | 1 cut(s) | 250 |
| PshBI | ATTAAT | 1 cut(s) | 858 |
| Psp124BI | GAGCTC | 2 cut(s) | 390, 763 |
| Psp5II | RGGWCCY | 1 cut(s) | 725 |
| Psp6I | CCWGG | 1 cut(s) | 638 |
| PspFI | CCCAGC | 1 cut(s) | 1050 |
| PspGI | CCWGG | 1 cut(s) | 638 |
| PspN4I | GGNNCC | 7 cut(s) | 180, 444, 540, 558, 582, 1007, 1068 |
| PspPI | GGNCC | 7 cut(s) | 240, 410, 556, 580, 725, 1005, 1048 |
| PspPPI | RGGWCCY | 1 cut(s) | 725 |
| PspXI | VCTCGAGB | 1 cut(s) | 1055 |
| PstI | CTGCAG | 1 cut(s) | 517 |
| PstNI | CAGNNNCTG | 1 cut(s) | 98 |
| PsuI | RGATCY | 2 cut(s) | 178, 822 |
| PteI | GCGCGC | 1 cut(s) | 1127 |
| PvuII | CAGCTG | 1 cut(s) | 149 |
| RruI | TCGCGA | 1 cut(s) | 942 |
| RsaI | GTAC | 2 cut(s) | 444, 663 |
| RsaNI | GTAC | 2 cut(s) | 443, 662 |
| RseI | CAYNNNNRTG | 1 cut(s) | 606 |
| SacI | GAGCTC | 2 cut(s) | 390, 763 |
| SapI | GCTCTTC | 1 cut(s) | 271 |
| SaqAI | TTAA | 1 cut(s) | 858 |
| Sau3AI | GATC | 5 cut(s) | 130, 178, 220, 463, 822 |
| Sau96I | GGNCC | 7 cut(s) | 240, 410, 556, 580, 725, 1005, 1048 |
| SchI | GAGTC | 1 cut(s) | 503 |
| ScrFI | CCNGG | 3 cut(s) | 392, 640, 744 |
| SduI | GDGCHC | 5 cut(s) | 90, 363, 390, 763, 1191 |
| SfaNI | GCATC | 1 cut(s) | 598 |
| SfcI | CTRYAG | 1 cut(s) | 513 |
| Sfr274I | CTCGAG | 1 cut(s) | 1055 |
| SinI | GGWCC | 4 cut(s) | 240, 410, 725, 1005 |
| SlaI | CTCGAG | 1 cut(s) | 1055 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 606 |
| SmlI | CTYRAG | 2 cut(s) | 354, 1055 |
| SmoI | CTYRAG | 2 cut(s) | 354, 1055 |
| Sse9I | AATT | 3 cut(s) | 39, 1031, 1171 |
| SseBI | AGGCCT | 1 cut(s) | 915 |
| SspMI | CTAG | 9 cut(s) | 27, 69, 320, 491, 644, 722, 888, 1088, 1145 |
| SstI | GAGCTC | 2 cut(s) | 390, 763 |
| StuI | AGGCCT | 1 cut(s) | 915 |
| StyD4I | CCNGG | 3 cut(s) | 390, 638, 742 |
| StyI | CCWWGG | 1 cut(s) | 194 |
| TaaI | ACNGT | 4 cut(s) | 142, 376, 436, 834 |
| TaqI | TCGA | 3 cut(s) | 223, 666, 1056 |
| TasI | AATT | 3 cut(s) | 39, 1031, 1171 |
| TauI | GCSGC | 5 cut(s) | 33, 452, 789, 1040, 1094 |
| TfiI | GAWTC | 5 cut(s) | 110, 316, 332, 487, 994 |
| Tru1I | TTAA | 1 cut(s) | 858 |
| Tru9I | TTAA | 1 cut(s) | 858 |
| TscAI | CASTG | 4 cut(s) | 193, 522, 808, 1047 |
| TseFI | GTSAC | 1 cut(s) | 1042 |
| Tsp45I | GTSAC | 1 cut(s) | 1042 |
| TspDTI | ATGAA | 3 cut(s) | 708, 843, 876 |
| TspGWI | ACGGA | 2 cut(s) | 868, 1018 |
| TspRI | CASTG | 4 cut(s) | 193, 522, 808, 1047 |
| VpaK11BI | GGWCC | 4 cut(s) | 240, 410, 725, 1005 |
| VspI | ATTAAT | 1 cut(s) | 858 |
| XbaI | TCTAGA | 2 cut(s) | 68, 490 |
| XceI | RCATGY | 1 cut(s) | 254 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1177 |
| XhoI | CTCGAG | 1 cut(s) | 1055 |
| XspI | CTAG | 9 cut(s) | 27, 69, 320, 491, 644, 722, 888, 1088, 1145 |