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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 215 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 367 |
| AccII | CGCG | 7 cut(s) | 18, 330, 343, 538, 540, 559, 561 |
| AciI | CCGC | 9 cut(s) | 18, 30, 81, 184, 341, 343, 472, 493, 557 |
| AclWI | GGATC | 2 cut(s) | 280, 293 |
| AcoI | YGGCCR | 3 cut(s) | 185, 240, 354 |
| AcyI | GRCGYC | 1 cut(s) | 216 |
| AdeI | CACNNNGTG | 1 cut(s) | 73 |
| AfaI | GTAC | 4 cut(s) | 126, 235, 398, 437 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 42, 152, 367, 528 |
| AgeI | ACCGGT | 1 cut(s) | 145 |
| AgsI | TTSAA | 2 cut(s) | 306, 499 |
| AjnI | CCWGG | 1 cut(s) | 512 |
| Alw21I | GWGCWC | 1 cut(s) | 69 |
| Alw26I | GTCTC | 1 cut(s) | 254 |
| AlwI | GGATC | 2 cut(s) | 280, 293 |
| Ama87I | CYCGRG | 1 cut(s) | 198 |
| AoxI | GGCC | 6 cut(s) | 3, 185, 240, 274, 354, 547 |
| AsiGI | ACCGGT | 1 cut(s) | 145 |
| AsiSI | GCGATCGC | 1 cut(s) | 536 |
| AspLEI | GCGC | 5 cut(s) | 23, 218, 540, 542, 561 |
| AspS9I | GGNCC | 3 cut(s) | 4, 170, 275 |
| AsuC2I | CCSGG | 1 cut(s) | 487 |
| AvaI | CYCGRG | 1 cut(s) | 198 |
| AvaII | GGWCC | 1 cut(s) | 170 |
| BalI | TGGCCA | 1 cut(s) | 242 |
| BamHI | GGATCC | 1 cut(s) | 285 |
| BanI | GGYRCC | 1 cut(s) | 215 |
| BanII | GRGCYC | 1 cut(s) | 199 |
| Bbv12I | GWGCWC | 1 cut(s) | 69 |
| BceAI | ACGGC | 4 cut(s) | 43, 172, 197, 545 |
| BciT130I | CCWGG | 1 cut(s) | 514 |
| BcnI | CCSGG | 1 cut(s) | 487 |
| BcoDI | GTCTC | 1 cut(s) | 254 |
| BfaI | CTAG | 1 cut(s) | 264 |
| BfoI | RGCGCY | 2 cut(s) | 24, 219 |
| BisI | GCNGC | 5 cut(s) | 19, 31, 185, 344, 557 |
| BlsI | GCNGC | 5 cut(s) | 20, 32, 186, 345, 558 |
| BmcAI | AGTACT | 1 cut(s) | 398 |
| Bme1390I | CCNGG | 2 cut(s) | 487, 514 |
| Bme18I | GGWCC | 1 cut(s) | 170 |
| BmeT110I | CYCGRG | 1 cut(s) | 198 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 170, 275 |
| BmiI | GGNNCC | 4 cut(s) | 34, 217, 287, 491 |
| BmrFI | CCNGG | 2 cut(s) | 487, 514 |
| BmsI | GCATC | 2 cut(s) | 259, 441 |
| BpuMI | CCSGG | 1 cut(s) | 487 |
| BsaHI | GRCGYC | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 3 cut(s) | 41, 237, 341 |
| BsaWI | WCCGGW | 1 cut(s) | 145 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 17, 47 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 42, 152, 367, 528 |
| Bse118I | RCCGGY | 1 cut(s) | 145 |
| BseBI | CCWGG | 1 cut(s) | 514 |
| BseDI | CCNNGG | 3 cut(s) | 41, 237, 341 |
| BseGI | GGATG | 2 cut(s) | 250, 336 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 42, 152, 367, 528 |
| BsePI | GCGCGC | 1 cut(s) | 538 |
| BseRI | GAGGAG | 1 cut(s) | 396 |
| BseX3I | CGGCCG | 1 cut(s) | 185 |
| Bsh1236I | CGCG | 7 cut(s) | 18, 330, 343, 538, 540, 559, 561 |
| Bsh1285I | CGRYCG | 3 cut(s) | 16, 188, 536 |
| BshFI | GGCC | 6 cut(s) | 5, 187, 242, 276, 356, 549 |
| BshNI | GGYRCC | 1 cut(s) | 215 |
| BshTI | ACCGGT | 1 cut(s) | 145 |
| BsiEI | CGRYCG | 3 cut(s) | 16, 188, 536 |
| BsiHKAI | GWGCWC | 1 cut(s) | 69 |
| BsiHKCI | CYCGRG | 1 cut(s) | 198 |
| BsiSI | CCGG | 2 cut(s) | 146, 487 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 42, 152, 367, 528 |
| BsmAI | GTCTC | 1 cut(s) | 254 |
| BsnI | GGCC | 6 cut(s) | 5, 187, 242, 276, 356, 549 |
| BsoBI | CYCGRG | 1 cut(s) | 198 |
| Bsp1286I | GDGCHC | 2 cut(s) | 69, 199 |
| Bsp143I | GATC | 4 cut(s) | 75, 285, 533, 562 |
| Bsp68I | TCGCGA | 1 cut(s) | 330 |
| BspACI | CCGC | 9 cut(s) | 18, 30, 81, 184, 341, 343, 472, 493, 557 |
| BspANI | GGCC | 6 cut(s) | 5, 187, 242, 276, 356, 549 |
| BspFNI | CGCG | 7 cut(s) | 18, 330, 343, 538, 540, 559, 561 |
| BspLI | GGNNCC | 4 cut(s) | 34, 217, 287, 491 |
| BspPI | GGATC | 2 cut(s) | 280, 293 |
| BspT107I | GGYRCC | 1 cut(s) | 215 |
| BsrFI | RCCGGY | 1 cut(s) | 145 |
| BssAI | RCCGGY | 1 cut(s) | 145 |
| BssECI | CCNNGG | 3 cut(s) | 41, 237, 341 |
| BssHII | GCGCGC | 1 cut(s) | 538 |
| BssMI | GATC | 4 cut(s) | 75, 285, 533, 562 |
| BssNI | GRCGYC | 1 cut(s) | 216 |
| Bst2UI | CCWGG | 1 cut(s) | 514 |
| Bst4CI | ACNGT | 6 cut(s) | 14, 45, 159, 170, 208, 238 |
| BstACI | GRCGYC | 1 cut(s) | 216 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 1 cut(s) | 540 |
| BstDEI | CTNAG | 2 cut(s) | 94, 466 |
| BstDSI | CCRYGG | 3 cut(s) | 41, 237, 341 |
| BstF5I | GGATG | 2 cut(s) | 250, 336 |
| BstFNI | CGCG | 7 cut(s) | 18, 330, 343, 538, 540, 559, 561 |
| BstH2I | RGCGCY | 2 cut(s) | 24, 219 |
| BstHHI | GCGC | 5 cut(s) | 23, 218, 540, 542, 561 |
| BstKTI | GATC | 4 cut(s) | 78, 288, 536, 565 |
| BstMAI | GTCTC | 1 cut(s) | 254 |
| BstMBI | GATC | 4 cut(s) | 75, 285, 533, 562 |
| BstMCI | CGRYCG | 3 cut(s) | 16, 188, 536 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 27, 273, 451, 523, 546 |
| BstNI | CCWGG | 1 cut(s) | 514 |
| BstSCI | CCNGG | 2 cut(s) | 485, 512 |
| BstUI | CGCG | 7 cut(s) | 18, 330, 343, 538, 540, 559, 561 |
| BstX2I | RGATCY | 1 cut(s) | 285 |
| BstYI | RGATCY | 1 cut(s) | 285 |
| BstZI | CGGCCG | 1 cut(s) | 185 |
| BsuRI | GGCC | 6 cut(s) | 5, 187, 242, 276, 356, 549 |
| BtgI | CCRYGG | 3 cut(s) | 41, 237, 341 |
| BtgZI | GCGATG | 2 cut(s) | 345, 402 |
| BtsCI | GGATG | 2 cut(s) | 250, 336 |
| BtuMI | TCGCGA | 1 cut(s) | 330 |
| Cac8I | GCNNGC | 1 cut(s) | 540 |
| CfoI | GCGC | 5 cut(s) | 23, 218, 540, 542, 561 |
| Cfr10I | RCCGGY | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 170, 275 |
| Cfr42I | CCGCGG | 1 cut(s) | 344 |
| Csp6I | GTAC | 4 cut(s) | 125, 234, 397, 436 |
| CspAI | ACCGGT | 1 cut(s) | 145 |
| CviAII | CATG | 1 cut(s) | 446 |
| CviQI | GTAC | 4 cut(s) | 125, 234, 397, 436 |
| DdeI | CTNAG | 2 cut(s) | 94, 466 |
| DinI | GGCGCC | 1 cut(s) | 217 |
| DpnI | GATC | 4 cut(s) | 77, 287, 535, 564 |
| DpnII | GATC | 4 cut(s) | 75, 285, 533, 562 |
| DraIII | CACNNNGTG | 1 cut(s) | 73 |
| EaeI | YGGCCR | 3 cut(s) | 185, 240, 354 |
| EagI | CGGCCG | 1 cut(s) | 185 |
| EciI | GGCGGA | 1 cut(s) | 96 |
| EclXI | CGGCCG | 1 cut(s) | 185 |
| Eco24I | GRGCYC | 1 cut(s) | 199 |
| Eco47I | GGWCC | 1 cut(s) | 170 |
| Eco52I | CGGCCG | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 198 |
| EcoRII | CCWGG | 1 cut(s) | 512 |
| EcoT22I | ATGCAT | 1 cut(s) | 252 |
| EcoT38I | GRGCYC | 1 cut(s) | 199 |
| EgeI | GGCGCC | 1 cut(s) | 217 |
| EheI | GGCGCC | 1 cut(s) | 217 |
| FaeI | CATG | 1 cut(s) | 449 |
| FaiI | YATR | 4 cut(s) | 248, 319, 430, 447 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 103, 135 |
| FatI | CATG | 1 cut(s) | 445 |
| FauI | CCCGC | 2 cut(s) | 348, 465 |
| Fnu4HI | GCNGC | 5 cut(s) | 19, 31, 185, 344, 557 |
| FokI | GGATG | 2 cut(s) | 237, 323 |
| FriOI | GRGCYC | 1 cut(s) | 199 |
| Fsp4HI | GCNGC | 5 cut(s) | 19, 31, 185, 344, 557 |
| FspBI | CTAG | 1 cut(s) | 264 |
| GlaI | GCGC | 5 cut(s) | 22, 217, 539, 541, 560 |
| GluI | GCNGC | 5 cut(s) | 19, 31, 185, 344, 557 |
| HaeII | RGCGCY | 2 cut(s) | 24, 219 |
| HaeIII | GGCC | 6 cut(s) | 5, 187, 242, 276, 356, 549 |
| HapII | CCGG | 2 cut(s) | 146, 487 |
| HhaI | GCGC | 5 cut(s) | 23, 218, 540, 542, 561 |
| Hin1I | GRCGYC | 1 cut(s) | 216 |
| Hin1II | CATG | 1 cut(s) | 449 |
| Hin6I | GCGC | 5 cut(s) | 21, 216, 538, 540, 559 |
| HinP1I | GCGC | 5 cut(s) | 21, 216, 538, 540, 559 |
| HinfI | GANTC | 3 cut(s) | 302, 482, 506 |
| HpaII | CCGG | 2 cut(s) | 146, 487 |
| Hpy188I | TCNGA | 2 cut(s) | 418, 575 |
| Hpy188III | TCNNGA | 3 cut(s) | 259, 299, 329 |
| Hpy99I | CGWCG | 1 cut(s) | 330 |
| HpyCH4III | ACNGT | 6 cut(s) | 14, 45, 159, 170, 208, 238 |
| HpyCH4V | TGCA | 2 cut(s) | 250, 445 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 27, 273, 451, 523, 546 |
| HpyF3I | CTNAG | 2 cut(s) | 94, 466 |
| Hsp92I | GRCGYC | 1 cut(s) | 216 |
| Hsp92II | CATG | 1 cut(s) | 449 |
| HspAI | GCGC | 5 cut(s) | 21, 216, 538, 540, 559 |
| KasI | GGCGCC | 1 cut(s) | 215 |
| KspI | CCGCGG | 1 cut(s) | 344 |
| Kzo9I | GATC | 4 cut(s) | 75, 285, 533, 562 |
| LmnI | GCTCC | 3 cut(s) | 38, 64, 495 |
| LpnPI | CCDG | 6 cut(s) | 159, 258, 284, 499, 500, 526 |
| LweI | GCATC | 2 cut(s) | 259, 441 |
| MaeI | CTAG | 1 cut(s) | 264 |
| MalI | GATC | 4 cut(s) | 77, 287, 535, 564 |
| MboI | GATC | 4 cut(s) | 75, 285, 533, 562 |
| MboII | GAAGA | 1 cut(s) | 491 |
| MflI | RGATCY | 1 cut(s) | 285 |
| MhlI | GDGCHC | 2 cut(s) | 69, 199 |
| MlsI | TGGCCA | 1 cut(s) | 242 |
| MluCI | AATT | 2 cut(s) | 84, 501 |
| MluNI | TGGCCA | 1 cut(s) | 242 |
| Mly113I | GGCGCC | 1 cut(s) | 216 |
| MnlI | CCTC | 6 cut(s) | 141, 183, 230, 417, 520, 532 |
| Mox20I | TGGCCA | 1 cut(s) | 242 |
| Mph1103I | ATGCAT | 1 cut(s) | 252 |
| MscI | TGGCCA | 1 cut(s) | 242 |
| Msp20I | TGGCCA | 1 cut(s) | 242 |
| MspA1I | CMGCKG | 1 cut(s) | 343 |
| MspI | CCGG | 2 cut(s) | 146, 487 |
| MspR9I | CCNGG | 2 cut(s) | 487, 514 |
| MvaI | CCWGG | 1 cut(s) | 514 |
| MvnI | CGCG | 7 cut(s) | 18, 330, 343, 538, 540, 559, 561 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 27, 273, 451, 523, 546 |
| NarI | GGCGCC | 1 cut(s) | 216 |
| NciI | CCSGG | 1 cut(s) | 487 |
| NdeII | GATC | 4 cut(s) | 75, 285, 533, 562 |
| NlaIII | CATG | 1 cut(s) | 449 |
| NlaIV | GGNNCC | 4 cut(s) | 34, 217, 287, 491 |
| NruI | TCGCGA | 1 cut(s) | 330 |
| NsiI | ATGCAT | 1 cut(s) | 252 |
| PauI | GCGCGC | 1 cut(s) | 538 |
| PfeI | GAWTC | 3 cut(s) | 302, 482, 506 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 367 |
| PinAI | ACCGGT | 1 cut(s) | 145 |
| PkrI | GCNGC | 5 cut(s) | 20, 32, 186, 345, 558 |
| Ple19I | CGATCG | 1 cut(s) | 536 |
| PluTI | GGCGCC | 1 cut(s) | 219 |
| Psp6I | CCWGG | 1 cut(s) | 512 |
| PspGI | CCWGG | 1 cut(s) | 512 |
| PspN4I | GGNNCC | 4 cut(s) | 34, 217, 287, 491 |
| PspPI | GGNCC | 3 cut(s) | 4, 170, 275 |
| PsuI | RGATCY | 1 cut(s) | 285 |
| PteI | GCGCGC | 1 cut(s) | 538 |
| PvuI | CGATCG | 1 cut(s) | 536 |
| RgaI | GCGATCGC | 1 cut(s) | 536 |
| RruI | TCGCGA | 1 cut(s) | 330 |
| RsaI | GTAC | 4 cut(s) | 126, 235, 398, 437 |
| RsaNI | GTAC | 4 cut(s) | 125, 234, 397, 436 |
| SacII | CCGCGG | 1 cut(s) | 344 |
| SatI | GCNGC | 5 cut(s) | 19, 31, 185, 344, 557 |
| Sau3AI | GATC | 4 cut(s) | 75, 285, 533, 562 |
| Sau96I | GGNCC | 3 cut(s) | 4, 170, 275 |
| ScaI | AGTACT | 1 cut(s) | 398 |
| ScrFI | CCNGG | 2 cut(s) | 487, 514 |
| SduI | GDGCHC | 2 cut(s) | 69, 199 |
| SetI | ASST | 1 cut(s) | 441 |
| SfaAI | GCGATCGC | 1 cut(s) | 536 |
| SfaNI | GCATC | 2 cut(s) | 259, 441 |
| SfoI | GGCGCC | 1 cut(s) | 217 |
| Sfr303I | CCGCGG | 1 cut(s) | 344 |
| SgfI | GCGATCGC | 1 cut(s) | 536 |
| SgrAI | CRCCGGYG | 1 cut(s) | 145 |
| SgrBI | CCGCGG | 1 cut(s) | 344 |
| SinI | GGWCC | 1 cut(s) | 170 |
| Sse9I | AATT | 2 cut(s) | 84, 501 |
| SsiI | CCGC | 9 cut(s) | 18, 30, 81, 184, 341, 343, 472, 493, 557 |
| SspDI | GGCGCC | 1 cut(s) | 215 |
| SspMI | CTAG | 1 cut(s) | 264 |
| StyD4I | CCNGG | 2 cut(s) | 485, 512 |
| TaaI | ACNGT | 6 cut(s) | 14, 45, 159, 170, 208, 238 |
| TaqI | TCGA | 1 cut(s) | 258 |
| TasI | AATT | 2 cut(s) | 84, 501 |
| TatI | WGTACW | 2 cut(s) | 124, 396 |
| TauI | GCSGC | 5 cut(s) | 21, 33, 187, 346, 559 |
| TfiI | GAWTC | 3 cut(s) | 302, 482, 506 |
| TspDTI | ATGAA | 3 cut(s) | 105, 306, 405 |
| TspGWI | ACGGA | 1 cut(s) | 314 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 367 |
| VpaK11BI | GGWCC | 1 cut(s) | 170 |
| XspI | CTAG | 1 cut(s) | 264 |
| ZrmI | AGTACT | 1 cut(s) | 398 |
| Zsp2I | ATGCAT | 1 cut(s) | 252 |