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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 32 |
| AccII | CGCG | 4 cut(s) | 96, 182, 217, 246 |
| AciI | CCGC | 8 cut(s) | 49, 63, 94, 156, 180, 182, 186, 217 |
| AclWI | GGATC | 1 cut(s) | 157 |
| AcoI | YGGCCR | 1 cut(s) | 183 |
| AfaI | GTAC | 2 cut(s) | 87, 103 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 30, 318 |
| AflII | CTTAAG | 1 cut(s) | 283 |
| AgsI | TTSAA | 1 cut(s) | 128 |
| AluBI | AGCT | 2 cut(s) | 68, 139 |
| AluI | AGCT | 2 cut(s) | 68, 139 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 209 |
| AlwI | GGATC | 1 cut(s) | 157 |
| Ama87I | CYCGRG | 1 cut(s) | 30 |
| AoxI | GGCC | 3 cut(s) | 183, 218, 350 |
| ApeKI | GCWGC | 2 cut(s) | 20, 65 |
| AspLEI | GCGC | 1 cut(s) | 57 |
| AspS9I | GGNCC | 3 cut(s) | 34, 321, 351 |
| AsuC2I | CCSGG | 2 cut(s) | 31, 32 |
| AvaI | CYCGRG | 1 cut(s) | 30 |
| AvaII | GGWCC | 2 cut(s) | 34, 321 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 209 |
| BbvI | GCAGC | 2 cut(s) | 32, 77 |
| BccI | CCATC | 1 cut(s) | 76 |
| BcnI | CCSGG | 2 cut(s) | 31, 32 |
| BfaI | CTAG | 1 cut(s) | 254 |
| BfrI | CTTAAG | 1 cut(s) | 283 |
| BisI | GCNGC | 7 cut(s) | 21, 63, 66, 94, 183, 186, 218 |
| BlsI | GCNGC | 7 cut(s) | 22, 64, 67, 95, 184, 187, 219 |
| Bme1390I | CCNGG | 2 cut(s) | 31, 32 |
| Bme18I | GGWCC | 2 cut(s) | 34, 321 |
| BmeT110I | CYCGRG | 1 cut(s) | 30 |
| BmgT120I | GGNCC | 3 cut(s) | 34, 321, 351 |
| BmiI | GGNNCC | 2 cut(s) | 35, 36 |
| BmrFI | CCNGG | 2 cut(s) | 31, 32 |
| BpuEI | CTTGAG | 1 cut(s) | 54 |
| BpuMI | CCSGG | 2 cut(s) | 31, 32 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 180, 347 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 30, 318 |
| Bse118I | RCCGGY | 1 cut(s) | 51 |
| BseDI | CCNNGG | 3 cut(s) | 30, 180, 347 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 30, 318 |
| BseX3I | CGGCCG | 1 cut(s) | 183 |
| BseXI | GCAGC | 2 cut(s) | 32, 77 |
| Bsh1236I | CGCG | 4 cut(s) | 96, 182, 217, 246 |
| Bsh1285I | CGRYCG | 2 cut(s) | 186, 262 |
| BshFI | GGCC | 3 cut(s) | 185, 220, 352 |
| BsiEI | CGRYCG | 2 cut(s) | 186, 262 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 209 |
| BsiHKCI | CYCGRG | 1 cut(s) | 30 |
| BsiSI | CCGG | 2 cut(s) | 31, 52 |
| BslFI | GGGAC | 3 cut(s) | 20, 25, 293 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 30, 318 |
| BsmFI | GGGAC | 3 cut(s) | 20, 25, 293 |
| BsnI | GGCC | 3 cut(s) | 185, 220, 352 |
| BsoBI | CYCGRG | 1 cut(s) | 30 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 209 |
| Bsp143I | GATC | 2 cut(s) | 162, 259 |
| Bsp68I | TCGCGA | 1 cut(s) | 246 |
| BspACI | CCGC | 8 cut(s) | 49, 63, 94, 156, 180, 182, 186, 217 |
| BspANI | GGCC | 3 cut(s) | 185, 220, 352 |
| BspFNI | CGCG | 4 cut(s) | 96, 182, 217, 246 |
| BspLI | GGNNCC | 2 cut(s) | 35, 36 |
| BspPI | GGATC | 1 cut(s) | 157 |
| BspTI | CTTAAG | 1 cut(s) | 283 |
| BsrFI | RCCGGY | 1 cut(s) | 51 |
| BssAI | RCCGGY | 1 cut(s) | 51 |
| BssECI | CCNNGG | 3 cut(s) | 30, 180, 347 |
| BssMI | GATC | 2 cut(s) | 162, 259 |
| BstAFI | CTTAAG | 1 cut(s) | 283 |
| BstC8I | GCNNGC | 1 cut(s) | 53 |
| BstDSI | CCRYGG | 1 cut(s) | 180 |
| BstFNI | CGCG | 4 cut(s) | 96, 182, 217, 246 |
| BstHHI | GCGC | 1 cut(s) | 57 |
| BstKTI | GATC | 2 cut(s) | 165, 262 |
| BstMBI | GATC | 2 cut(s) | 162, 259 |
| BstMCI | CGRYCG | 2 cut(s) | 186, 262 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 231 |
| BstSCI | CCNGG | 2 cut(s) | 29, 30 |
| BstUI | CGCG | 4 cut(s) | 96, 182, 217, 246 |
| BstV1I | GCAGC | 2 cut(s) | 32, 77 |
| BstZI | CGGCCG | 1 cut(s) | 183 |
| BsuRI | GGCC | 3 cut(s) | 185, 220, 352 |
| BtgI | CCRYGG | 1 cut(s) | 180 |
| BtuMI | TCGCGA | 1 cut(s) | 246 |
| Cac8I | GCNNGC | 1 cut(s) | 53 |
| CciNI | GCGGCCGC | 1 cut(s) | 183 |
| CfoI | GCGC | 1 cut(s) | 57 |
| Cfr10I | RCCGGY | 1 cut(s) | 51 |
| Cfr13I | GGNCC | 3 cut(s) | 34, 321, 351 |
| Cfr42I | CCGCGG | 1 cut(s) | 183 |
| Cfr9I | CCCGGG | 1 cut(s) | 30 |
| Csp6I | GTAC | 2 cut(s) | 86, 102 |
| CviJI | RGCY | 8 cut(s) | 23, 68, 139, 185, 220, 331, 346, 352 |
| CviKI_1 | RGCY | 8 cut(s) | 23, 68, 139, 185, 220, 331, 346, 352 |
| CviQI | GTAC | 2 cut(s) | 86, 102 |
| DpnI | GATC | 2 cut(s) | 164, 261 |
| DpnII | GATC | 2 cut(s) | 162, 259 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 32 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 32 |
| EaeI | YGGCCR | 1 cut(s) | 183 |
| EagI | CGGCCG | 1 cut(s) | 183 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| EclXI | CGGCCG | 1 cut(s) | 183 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco47I | GGWCC | 2 cut(s) | 34, 321 |
| Eco52I | CGGCCG | 1 cut(s) | 183 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| Eco88I | CYCGRG | 1 cut(s) | 30 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoO109I | RGGNCCY | 2 cut(s) | 34, 321 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| FaiI | YATR | 1 cut(s) | 133 |
| FaqI | GGGAC | 3 cut(s) | 20, 25, 293 |
| FauI | CCCGC | 1 cut(s) | 163 |
| Fnu4HI | GCNGC | 7 cut(s) | 21, 63, 66, 94, 183, 186, 218 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 7 cut(s) | 21, 63, 66, 94, 183, 186, 218 |
| FspBI | CTAG | 1 cut(s) | 254 |
| GlaI | GCGC | 1 cut(s) | 56 |
| GluI | GCNGC | 7 cut(s) | 21, 63, 66, 94, 183, 186, 218 |
| HaeIII | GGCC | 3 cut(s) | 185, 220, 352 |
| HapII | CCGG | 2 cut(s) | 31, 52 |
| HhaI | GCGC | 1 cut(s) | 57 |
| Hin6I | GCGC | 1 cut(s) | 55 |
| HinP1I | GCGC | 1 cut(s) | 55 |
| HinfI | GANTC | 4 cut(s) | 26, 248, 268, 288 |
| HpaII | CCGG | 2 cut(s) | 31, 52 |
| Hpy188III | TCNNGA | 4 cut(s) | 37, 71, 245, 319 |
| HpyAV | CCTTC | 1 cut(s) | 314 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 2 cut(s) | 145, 225 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 231 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| HspAI | GCGC | 1 cut(s) | 55 |
| KflI | GGGWCCC | 1 cut(s) | 34 |
| KroI | GCCGGC | 1 cut(s) | 51 |
| KroNI | GCCGGC | 1 cut(s) | 53 |
| KspI | CCGCGG | 1 cut(s) | 183 |
| Kzo9I | GATC | 2 cut(s) | 162, 259 |
| LpnPI | CCDG | 3 cut(s) | 44, 65, 304 |
| Lsp1109I | GCAGC | 2 cut(s) | 32, 77 |
| MaeI | CTAG | 1 cut(s) | 254 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MaeIII | GTNAC | 1 cut(s) | 296 |
| MalI | GATC | 2 cut(s) | 164, 261 |
| MboI | GATC | 2 cut(s) | 162, 259 |
| MboII | GAAGA | 2 cut(s) | 125, 143 |
| MhlI | GDGCHC | 2 cut(s) | 141, 209 |
| MluCI | AATT | 1 cut(s) | 355 |
| MlyI | GAGTC | 2 cut(s) | 20, 242 |
| MnlI | CCTC | 2 cut(s) | 334, 342 |
| MreI | CGCCGGCG | 1 cut(s) | 51 |
| MroNI | GCCGGC | 1 cut(s) | 51 |
| MseI | TTAA | 1 cut(s) | 284 |
| MspA1I | CMGCKG | 1 cut(s) | 182 |
| MspCI | CTTAAG | 1 cut(s) | 283 |
| MspI | CCGG | 2 cut(s) | 31, 52 |
| MspR9I | CCNGG | 2 cut(s) | 31, 32 |
| MvnI | CGCG | 4 cut(s) | 96, 182, 217, 246 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 231 |
| NaeI | GCCGGC | 1 cut(s) | 53 |
| NciI | CCSGG | 2 cut(s) | 31, 32 |
| NdeII | GATC | 2 cut(s) | 162, 259 |
| NgoMIV | GCCGGC | 1 cut(s) | 51 |
| NlaIV | GGNNCC | 2 cut(s) | 35, 36 |
| NotI | GCGGCCGC | 1 cut(s) | 183 |
| NruI | TCGCGA | 1 cut(s) | 246 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 97 |
| PdiI | GCCGGC | 1 cut(s) | 53 |
| PfeI | GAWTC | 2 cut(s) | 268, 288 |
| PkrI | GCNGC | 7 cut(s) | 22, 64, 67, 95, 184, 187, 219 |
| Ple19I | CGATCG | 1 cut(s) | 262 |
| PleI | GAGTC | 2 cut(s) | 20, 242 |
| PpsI | GAGTC | 2 cut(s) | 20, 242 |
| PpuMI | RGGWCCY | 2 cut(s) | 34, 321 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| Psp5II | RGGWCCY | 2 cut(s) | 34, 321 |
| PspN4I | GGNNCC | 2 cut(s) | 35, 36 |
| PspPI | GGNCC | 3 cut(s) | 34, 321, 351 |
| PspPPI | RGGWCCY | 2 cut(s) | 34, 321 |
| PvuI | CGATCG | 1 cut(s) | 262 |
| RruI | TCGCGA | 1 cut(s) | 246 |
| RsaI | GTAC | 2 cut(s) | 87, 103 |
| RsaNI | GTAC | 2 cut(s) | 86, 102 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SacII | CCGCGG | 1 cut(s) | 183 |
| SaqAI | TTAA | 1 cut(s) | 284 |
| SatI | GCNGC | 7 cut(s) | 21, 63, 66, 94, 183, 186, 218 |
| Sau3AI | GATC | 2 cut(s) | 162, 259 |
| Sau96I | GGNCC | 3 cut(s) | 34, 321, 351 |
| SchI | GAGTC | 2 cut(s) | 20, 242 |
| ScrFI | CCNGG | 2 cut(s) | 31, 32 |
| SduI | GDGCHC | 2 cut(s) | 141, 209 |
| SetI | ASST | 5 cut(s) | 70, 103, 141, 306, 326 |
| Sfr303I | CCGCGG | 1 cut(s) | 183 |
| SgrAI | CRCCGGYG | 1 cut(s) | 51 |
| SgrBI | CCGCGG | 1 cut(s) | 183 |
| SinI | GGWCC | 2 cut(s) | 34, 321 |
| SmaI | CCCGGG | 1 cut(s) | 32 |
| SmlI | CTYRAG | 2 cut(s) | 69, 283 |
| SmoI | CTYRAG | 2 cut(s) | 69, 283 |
| Sse9I | AATT | 1 cut(s) | 355 |
| SsiI | CCGC | 8 cut(s) | 49, 63, 94, 156, 180, 182, 186, 217 |
| SspMI | CTAG | 1 cut(s) | 254 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| StyD4I | CCNGG | 2 cut(s) | 29, 30 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TaqI | TCGA | 3 cut(s) | 262, 307, 341 |
| TasI | AATT | 1 cut(s) | 355 |
| TauI | GCSGC | 5 cut(s) | 65, 96, 185, 188, 220 |
| TfiI | GAWTC | 2 cut(s) | 268, 288 |
| Tru1I | TTAA | 1 cut(s) | 284 |
| Tru9I | TTAA | 1 cut(s) | 284 |
| TseI | GCWGC | 2 cut(s) | 20, 65 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspMI | CCCGGG | 1 cut(s) | 30 |
| Vha464I | CTTAAG | 1 cut(s) | 283 |
| VpaK11BI | GGWCC | 2 cut(s) | 34, 321 |
| XmaI | CCCGGG | 1 cut(s) | 30 |
| XspI | CTAG | 1 cut(s) | 254 |