Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 3 cut(s) | 83, 163, 813 |
| AccII | CGCG | 6 cut(s) | 169, 320, 355, 423, 649, 788 |
| AciI | CCGC | 7 cut(s) | 88, 167, 320, 647, 649, 783, 786 |
| AclWI | GGATC | 1 cut(s) | 878 |
| AcoI | YGGCCR | 6 cut(s) | 302, 363, 499, 574, 761, 780 |
| AfaI | GTAC | 2 cut(s) | 299, 827 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 425, 554, 648, 789, 810 |
| AflIII | ACRYGT | 1 cut(s) | 145 |
| AhlI | ACTAGT | 1 cut(s) | 742 |
| AjnI | CCWGG | 4 cut(s) | 247, 360, 758, 835 |
| AluBI | AGCT | 3 cut(s) | 56, 328, 639 |
| AluI | AGCT | 3 cut(s) | 56, 328, 639 |
| Alw26I | GTCTC | 2 cut(s) | 109, 852 |
| AlwI | GGATC | 1 cut(s) | 878 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 4 cut(s) | 56, 446, 624, 636 |
| AspLEI | GCGC | 3 cut(s) | 274, 320, 355 |
| AspS9I | GGNCC | 5 cut(s) | 157, 158, 232, 243, 873 |
| AsuC2I | CCSGG | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 1 cut(s) | 569 |
| AvaII | GGWCC | 2 cut(s) | 232, 243 |
| BaeGI | GKGCMC | 3 cut(s) | 88, 161, 818 |
| BalI | TGGCCA | 5 cut(s) | 304, 365, 501, 576, 763 |
| BamHI | GGATCC | 1 cut(s) | 883 |
| BanI | GGYRCC | 3 cut(s) | 83, 163, 813 |
| BanII | GRGCYC | 2 cut(s) | 161, 564 |
| BbvI | GCAGC | 4 cut(s) | 43, 433, 636, 648 |
| BccI | CCATC | 6 cut(s) | 225, 313, 419, 548, 557, 607 |
| BceAI | ACGGC | 3 cut(s) | 220, 624, 795 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 263, 297 |
| BciT130I | CCWGG | 4 cut(s) | 249, 362, 760, 837 |
| BcnI | CCSGG | 1 cut(s) | 161 |
| BcoDI | GTCTC | 2 cut(s) | 109, 852 |
| BcuI | ACTAGT | 1 cut(s) | 742 |
| BfaI | CTAG | 1 cut(s) | 743 |
| BisI | GCNGC | 6 cut(s) | 57, 447, 625, 637, 783, 786 |
| BlsI | GCNGC | 6 cut(s) | 58, 448, 626, 638, 784, 787 |
| Bme1390I | CCNGG | 5 cut(s) | 161, 249, 362, 760, 837 |
| Bme18I | GGWCC | 2 cut(s) | 232, 243 |
| BmgT120I | GGNCC | 5 cut(s) | 157, 158, 232, 243, 873 |
| BmiI | GGNNCC | 7 cut(s) | 73, 85, 159, 165, 245, 815, 885 |
| BmrFI | CCNGG | 5 cut(s) | 161, 249, 362, 760, 837 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 1 cut(s) | 857 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpmI | CTGGAG | 2 cut(s) | 270, 712 |
| BpuMI | CCSGG | 1 cut(s) | 161 |
| Bsa29I | ATCGAT | 1 cut(s) | 552 |
| BsaBI | GATNNNNATC | 1 cut(s) | 429 |
| BsaI | GGTCTC | 2 cut(s) | 109, 852 |
| BsaJI | CCNNGG | 4 cut(s) | 247, 606, 647, 748 |
| BsaWI | WCCGGW | 2 cut(s) | 74, 229 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 425, 554, 648, 789, 810 |
| Bse1I | ACTGG | 7 cut(s) | 159, 305, 374, 544, 622, 678, 804 |
| Bse3DI | GCAATG | 1 cut(s) | 680 |
| Bse8I | GATNNNNATC | 1 cut(s) | 429 |
| BseBI | CCWGG | 4 cut(s) | 249, 362, 760, 837 |
| BseCI | ATCGAT | 1 cut(s) | 552 |
| BseDI | CCNNGG | 4 cut(s) | 247, 606, 647, 748 |
| BseGI | GGATG | 2 cut(s) | 305, 848 |
| BseJI | GATNNNNATC | 1 cut(s) | 429 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 425, 554, 648, 789, 810 |
| BseMI | GCAATG | 1 cut(s) | 680 |
| BseMII | CTCAG | 1 cut(s) | 142 |
| BseNI | ACTGG | 7 cut(s) | 159, 305, 374, 544, 622, 678, 804 |
| BseSI | GKGCMC | 3 cut(s) | 88, 161, 818 |
| BseX3I | CGGCCG | 1 cut(s) | 780 |
| BseXI | GCAGC | 4 cut(s) | 43, 433, 636, 648 |
| Bsh1236I | CGCG | 6 cut(s) | 169, 320, 355, 423, 649, 788 |
| Bsh1285I | CGRYCG | 1 cut(s) | 783 |
| BshNI | GGYRCC | 3 cut(s) | 83, 163, 813 |
| BshVI | ATCGAT | 1 cut(s) | 552 |
| BsiEI | CGRYCG | 1 cut(s) | 783 |
| BsiSI | CCGG | 3 cut(s) | 75, 161, 230 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 425, 554, 648, 789, 810 |
| BsmAI | GTCTC | 2 cut(s) | 109, 852 |
| Bso31I | GGTCTC | 2 cut(s) | 109, 852 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 161, 564, 818 |
| Bsp143I | GATC | 2 cut(s) | 312, 883 |
| Bsp68I | TCGCGA | 1 cut(s) | 423 |
| BspACI | CCGC | 7 cut(s) | 88, 167, 320, 647, 649, 783, 786 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspDI | ATCGAT | 1 cut(s) | 552 |
| BspFNI | CGCG | 6 cut(s) | 169, 320, 355, 423, 649, 788 |
| BspLI | GGNNCC | 7 cut(s) | 73, 85, 159, 165, 245, 815, 885 |
| BspPI | GGATC | 1 cut(s) | 878 |
| BspT107I | GGYRCC | 3 cut(s) | 83, 163, 813 |
| BspTNI | GGTCTC | 2 cut(s) | 109, 852 |
| BsrDI | GCAATG | 1 cut(s) | 680 |
| BsrI | ACTGG | 7 cut(s) | 159, 305, 374, 544, 622, 678, 804 |
| BssECI | CCNNGG | 4 cut(s) | 247, 606, 647, 748 |
| BssMI | GATC | 2 cut(s) | 312, 883 |
| BssT1I | CCWWGG | 1 cut(s) | 748 |
| Bst2UI | CCWGG | 4 cut(s) | 249, 362, 760, 837 |
| Bst4CI | ACNGT | 1 cut(s) | 825 |
| BstC8I | GCNNGC | 4 cut(s) | 61, 88, 351, 437 |
| BstDEI | CTNAG | 2 cut(s) | 128, 632 |
| BstDSI | CCRYGG | 2 cut(s) | 606, 647 |
| BstF5I | GGATG | 2 cut(s) | 305, 848 |
| BstFNI | CGCG | 6 cut(s) | 169, 320, 355, 423, 649, 788 |
| BstHHI | GCGC | 3 cut(s) | 274, 320, 355 |
| BstKTI | GATC | 2 cut(s) | 315, 886 |
| BstMAI | GTCTC | 2 cut(s) | 109, 852 |
| BstMBI | GATC | 2 cut(s) | 312, 883 |
| BstMCI | CGRYCG | 1 cut(s) | 783 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 130, 420, 633, 871 |
| BstNI | CCWGG | 4 cut(s) | 249, 362, 760, 837 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstSCI | CCNGG | 5 cut(s) | 159, 247, 360, 758, 835 |
| BstSLI | GKGCMC | 3 cut(s) | 88, 161, 818 |
| BstUI | CGCG | 6 cut(s) | 169, 320, 355, 423, 649, 788 |
| BstV1I | GCAGC | 4 cut(s) | 43, 433, 636, 648 |
| BstX2I | RGATCY | 1 cut(s) | 883 |
| BstYI | RGATCY | 1 cut(s) | 883 |
| BstZI | CGGCCG | 1 cut(s) | 780 |
| Bsu15I | ATCGAT | 1 cut(s) | 552 |
| BsuTUI | ATCGAT | 1 cut(s) | 552 |
| BtgI | CCRYGG | 2 cut(s) | 606, 647 |
| BtgZI | GCGATG | 1 cut(s) | 438 |
| BtsCI | GGATG | 2 cut(s) | 305, 848 |
| BtsI | GCAGTG | 1 cut(s) | 119 |
| BtsIMutI | CAGTG | 2 cut(s) | 119, 811 |
| BtuMI | TCGCGA | 1 cut(s) | 423 |
| Cac8I | GCNNGC | 4 cut(s) | 61, 88, 351, 437 |
| CfoI | GCGC | 3 cut(s) | 274, 320, 355 |
| Cfr13I | GGNCC | 5 cut(s) | 157, 158, 232, 243, 873 |
| Cfr42I | CCGCGG | 1 cut(s) | 650 |
| ClaI | ATCGAT | 1 cut(s) | 552 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 2 cut(s) | 298, 826 |
| CviAII | CATG | 2 cut(s) | 146, 845 |
| CviQI | GTAC | 2 cut(s) | 298, 826 |
| DdeI | CTNAG | 2 cut(s) | 128, 632 |
| DpnI | GATC | 2 cut(s) | 314, 885 |
| DpnII | GATC | 2 cut(s) | 312, 883 |
| EaeI | YGGCCR | 6 cut(s) | 302, 363, 499, 574, 761, 780 |
| EagI | CGGCCG | 1 cut(s) | 780 |
| EclXI | CGGCCG | 1 cut(s) | 780 |
| Eco130I | CCWWGG | 1 cut(s) | 748 |
| Eco24I | GRGCYC | 2 cut(s) | 161, 564 |
| Eco31I | GGTCTC | 2 cut(s) | 109, 852 |
| Eco32I | GATATC | 1 cut(s) | 490 |
| Eco47I | GGWCC | 2 cut(s) | 232, 243 |
| Eco52I | CGGCCG | 1 cut(s) | 780 |
| EcoO109I | RGGNCCY | 1 cut(s) | 243 |
| EcoRII | CCWGG | 4 cut(s) | 247, 360, 758, 835 |
| EcoRV | GATATC | 1 cut(s) | 490 |
| EcoT14I | CCWWGG | 1 cut(s) | 748 |
| EcoT22I | ATGCAT | 1 cut(s) | 850 |
| EcoT38I | GRGCYC | 2 cut(s) | 161, 564 |
| ErhI | CCWWGG | 1 cut(s) | 748 |
| FaeI | CATG | 2 cut(s) | 149, 848 |
| FaiI | YATR | 6 cut(s) | 96, 147, 406, 573, 833, 846 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 700, 732 |
| FatI | CATG | 2 cut(s) | 145, 844 |
| FauI | CCCGC | 1 cut(s) | 95 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 447, 625, 637, 783, 786 |
| FokI | GGATG | 2 cut(s) | 292, 835 |
| FriOI | GRGCYC | 2 cut(s) | 161, 564 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 447, 625, 637, 783, 786 |
| FspBI | CTAG | 1 cut(s) | 743 |
| FspI | TGCGCA | 1 cut(s) | 273 |
| GlaI | GCGC | 3 cut(s) | 273, 319, 354 |
| GluI | GCNGC | 6 cut(s) | 57, 447, 625, 637, 783, 786 |
| GsuI | CTGGAG | 2 cut(s) | 270, 712 |
| HapII | CCGG | 3 cut(s) | 75, 161, 230 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 3 cut(s) | 274, 320, 355 |
| Hin1II | CATG | 2 cut(s) | 149, 848 |
| Hin6I | GCGC | 3 cut(s) | 272, 318, 353 |
| HinP1I | GCGC | 3 cut(s) | 272, 318, 353 |
| HinfI | GANTC | 2 cut(s) | 4, 584 |
| HpaII | CCGG | 3 cut(s) | 75, 161, 230 |
| HphI | GGTGA | 1 cut(s) | 569 |
| Hpy188I | TCNGA | 4 cut(s) | 152, 239, 494, 589 |
| Hpy188III | TCNNGA | 6 cut(s) | 32, 112, 182, 422, 691, 857 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 3 cut(s) | 234, 425, 460 |
| HpyCH4III | ACNGT | 1 cut(s) | 825 |
| HpyCH4V | TGCA | 4 cut(s) | 624, 670, 707, 848 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 130, 420, 633, 871 |
| HpyF3I | CTNAG | 2 cut(s) | 128, 632 |
| Hsp92II | CATG | 2 cut(s) | 149, 848 |
| HspAI | GCGC | 3 cut(s) | 272, 318, 353 |
| KspI | CCGCGG | 1 cut(s) | 650 |
| Kzo9I | GATC | 2 cut(s) | 312, 883 |
| LmnI | GCTCC | 2 cut(s) | 325, 644 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 433, 636, 648 |
| LweI | GCATC | 1 cut(s) | 857 |
| MaeI | CTAG | 1 cut(s) | 743 |
| MaeIII | GTNAC | 1 cut(s) | 511 |
| MalI | GATC | 2 cut(s) | 314, 885 |
| MboI | GATC | 2 cut(s) | 312, 883 |
| MboII | GAAGA | 2 cut(s) | 50, 708 |
| MflI | RGATCY | 1 cut(s) | 883 |
| MhlI | GDGCHC | 4 cut(s) | 88, 161, 564, 818 |
| MlsI | TGGCCA | 5 cut(s) | 304, 365, 501, 576, 763 |
| MluCI | AATT | 2 cut(s) | 78, 578 |
| MluNI | TGGCCA | 5 cut(s) | 304, 365, 501, 576, 763 |
| MmeI | TCCRAC | 2 cut(s) | 130, 684 |
| MnlI | CCTC | 8 cut(s) | 28, 209, 245, 278, 319, 429, 781, 828 |
| Mox20I | TGGCCA | 5 cut(s) | 304, 365, 501, 576, 763 |
| Mph1103I | ATGCAT | 1 cut(s) | 850 |
| MscI | TGGCCA | 5 cut(s) | 304, 365, 501, 576, 763 |
| Msp20I | TGGCCA | 5 cut(s) | 304, 365, 501, 576, 763 |
| MspA1I | CMGCKG | 2 cut(s) | 90, 649 |
| MspI | CCGG | 3 cut(s) | 75, 161, 230 |
| MspR9I | CCNGG | 5 cut(s) | 161, 249, 362, 760, 837 |
| MvaI | CCWGG | 4 cut(s) | 249, 362, 760, 837 |
| MvnI | CGCG | 6 cut(s) | 169, 320, 355, 423, 649, 788 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 130, 420, 633, 871 |
| NciI | CCSGG | 1 cut(s) | 161 |
| NdeII | GATC | 2 cut(s) | 312, 883 |
| NlaIII | CATG | 2 cut(s) | 149, 848 |
| NlaIV | GGNNCC | 7 cut(s) | 73, 85, 159, 165, 245, 815, 885 |
| NruI | TCGCGA | 1 cut(s) | 423 |
| NsbI | TGCGCA | 1 cut(s) | 273 |
| NsiI | ATGCAT | 1 cut(s) | 850 |
| NspI | RCATGY | 1 cut(s) | 149 |
| PciI | ACATGT | 1 cut(s) | 145 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 346, 785 |
| PfeI | GAWTC | 1 cut(s) | 584 |
| PkrI | GCNGC | 6 cut(s) | 58, 448, 626, 638, 784, 787 |
| PpuMI | RGGWCCY | 1 cut(s) | 243 |
| PscI | ACATGT | 1 cut(s) | 145 |
| Psp5II | RGGWCCY | 1 cut(s) | 243 |
| Psp6I | CCWGG | 4 cut(s) | 247, 360, 758, 835 |
| PspGI | CCWGG | 4 cut(s) | 247, 360, 758, 835 |
| PspN4I | GGNNCC | 7 cut(s) | 73, 85, 159, 165, 245, 815, 885 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 5 cut(s) | 157, 158, 232, 243, 873 |
| PspPPI | RGGWCCY | 1 cut(s) | 243 |
| PsuI | RGATCY | 1 cut(s) | 883 |
| RruI | TCGCGA | 1 cut(s) | 423 |
| RsaI | GTAC | 2 cut(s) | 299, 827 |
| RsaNI | GTAC | 2 cut(s) | 298, 826 |
| SacII | CCGCGG | 1 cut(s) | 650 |
| SatI | GCNGC | 6 cut(s) | 57, 447, 625, 637, 783, 786 |
| Sau3AI | GATC | 2 cut(s) | 312, 883 |
| Sau96I | GGNCC | 5 cut(s) | 157, 158, 232, 243, 873 |
| ScrFI | CCNGG | 5 cut(s) | 161, 249, 362, 760, 837 |
| SduI | GDGCHC | 4 cut(s) | 88, 161, 564, 818 |
| SetI | ASST | 7 cut(s) | 58, 214, 330, 363, 385, 485, 641 |
| SfaNI | GCATC | 1 cut(s) | 857 |
| Sfr303I | CCGCGG | 1 cut(s) | 650 |
| SgrBI | CCGCGG | 1 cut(s) | 650 |
| SinI | GGWCC | 2 cut(s) | 232, 243 |
| SpeI | ACTAGT | 1 cut(s) | 742 |
| Sse9I | AATT | 2 cut(s) | 78, 578 |
| SsiI | CCGC | 7 cut(s) | 88, 167, 320, 647, 649, 783, 786 |
| SspMI | CTAG | 1 cut(s) | 743 |
| StyD4I | CCNGG | 5 cut(s) | 159, 247, 360, 758, 835 |
| StyI | CCWWGG | 1 cut(s) | 748 |
| TaaI | ACNGT | 1 cut(s) | 825 |
| TaqI | TCGA | 5 cut(s) | 220, 283, 311, 552, 856 |
| TasI | AATT | 2 cut(s) | 78, 578 |
| TauI | GCSGC | 2 cut(s) | 785, 788 |
| TfiI | GAWTC | 1 cut(s) | 584 |
| TscAI | CASTG | 2 cut(s) | 126, 811 |
| TseI | GCWGC | 4 cut(s) | 56, 446, 624, 636 |
| TspDTI | ATGAA | 1 cut(s) | 702 |
| TspRI | CASTG | 2 cut(s) | 126, 811 |
| VpaK11BI | GGWCC | 2 cut(s) | 232, 243 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XspI | CTAG | 1 cut(s) | 743 |
| Zsp2I | ATGCAT | 1 cut(s) | 850 |