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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 212 |
| AccBSI | CCGCTC | 1 cut(s) | 158 |
| AccI | GTMKAC | 1 cut(s) | 163 |
| AciI | CCGC | 4 cut(s) | 156, 416, 459, 565 |
| AcoI | YGGCCR | 2 cut(s) | 245, 562 |
| AcsI | RAATTY | 1 cut(s) | 491 |
| AfaI | GTAC | 1 cut(s) | 529 |
| AfeI | AGCGCT | 1 cut(s) | 397 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 57, 237, 323 |
| AgsI | TTSAA | 1 cut(s) | 74 |
| AjnI | CCWGG | 1 cut(s) | 190 |
| Alw21I | GWGCWC | 2 cut(s) | 31, 447 |
| Alw26I | GTCTC | 1 cut(s) | 44 |
| Aor51HI | AGCGCT | 1 cut(s) | 397 |
| AoxI | GGCC | 6 cut(s) | 59, 101, 148, 245, 378, 562 |
| ApeKI | GCWGC | 1 cut(s) | 393 |
| ApoI | RAATTY | 1 cut(s) | 491 |
| AspLEI | GCGC | 1 cut(s) | 398 |
| AspS9I | GGNCC | 3 cut(s) | 60, 101, 379 |
| AsuHPI | GGTGA | 2 cut(s) | 292, 358 |
| BaeGI | GKGCMC | 1 cut(s) | 217 |
| BanI | GGYRCC | 1 cut(s) | 212 |
| BanII | GRGCYC | 1 cut(s) | 579 |
| Bbv12I | GWGCWC | 2 cut(s) | 31, 447 |
| BbvI | GCAGC | 1 cut(s) | 405 |
| BccI | CCATC | 6 cut(s) | 59, 93, 231, 311, 317, 326 |
| BceAI | ACGGC | 2 cut(s) | 163, 232 |
| BciT130I | CCWGG | 1 cut(s) | 192 |
| BcoDI | GTCTC | 1 cut(s) | 44 |
| BfoI | RGCGCY | 1 cut(s) | 399 |
| BisI | GCNGC | 2 cut(s) | 394, 565 |
| BlsI | GCNGC | 2 cut(s) | 395, 566 |
| Bme1390I | CCNGG | 1 cut(s) | 192 |
| BmgT120I | GGNCC | 3 cut(s) | 60, 101, 379 |
| BmiI | GGNNCC | 4 cut(s) | 16, 102, 214, 409 |
| BmrFI | CCNGG | 1 cut(s) | 192 |
| BmrI | ACTGGG | 3 cut(s) | 19, 107, 257 |
| BmsI | GCATC | 2 cut(s) | 30, 121 |
| BmuI | ACTGGG | 3 cut(s) | 19, 107, 257 |
| BpmI | CTGGAG | 1 cut(s) | 213 |
| Bsa29I | ATCGAT | 1 cut(s) | 321 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 392, 422 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 57, 237, 323 |
| Bse118I | RCCGGY | 1 cut(s) | 455 |
| Bse1I | ACTGG | 6 cut(s) | 14, 102, 173, 263, 313, 529 |
| Bse3DI | GCAATG | 1 cut(s) | 574 |
| BseBI | CCWGG | 1 cut(s) | 192 |
| BseCI | ATCGAT | 1 cut(s) | 321 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 2 cut(s) | 47, 51 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 57, 237, 323 |
| BseMI | GCAATG | 1 cut(s) | 574 |
| BseNI | ACTGG | 6 cut(s) | 14, 102, 173, 263, 313, 529 |
| BseSI | GKGCMC | 1 cut(s) | 217 |
| BseXI | GCAGC | 1 cut(s) | 405 |
| BsgI | GTGCAG | 1 cut(s) | 487 |
| Bsh1285I | CGRYCG | 1 cut(s) | 456 |
| BshFI | GGCC | 6 cut(s) | 61, 103, 150, 247, 380, 564 |
| BshNI | GGYRCC | 1 cut(s) | 212 |
| BshVI | ATCGAT | 1 cut(s) | 321 |
| BsiEI | CGRYCG | 1 cut(s) | 456 |
| BsiHKAI | GWGCWC | 2 cut(s) | 31, 447 |
| BsiSI | CCGG | 1 cut(s) | 456 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 57, 237, 323 |
| BsmAI | GTCTC | 1 cut(s) | 44 |
| BsmBI | CGTCTC | 1 cut(s) | 44 |
| BsmI | GAATGC | 1 cut(s) | 33 |
| BsnI | GGCC | 6 cut(s) | 61, 103, 150, 247, 380, 564 |
| Bsp1286I | GDGCHC | 4 cut(s) | 31, 217, 447, 579 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspACI | CCGC | 4 cut(s) | 156, 416, 459, 565 |
| BspANI | GGCC | 6 cut(s) | 61, 103, 150, 247, 380, 564 |
| BspDI | ATCGAT | 1 cut(s) | 321 |
| BspLI | GGNNCC | 4 cut(s) | 16, 102, 214, 409 |
| BspT107I | GGYRCC | 1 cut(s) | 212 |
| BsrBI | CCGCTC | 1 cut(s) | 158 |
| BsrDI | GCAATG | 1 cut(s) | 574 |
| BsrFI | RCCGGY | 1 cut(s) | 455 |
| BsrI | ACTGG | 6 cut(s) | 14, 102, 173, 263, 313, 529 |
| BssAI | RCCGGY | 1 cut(s) | 455 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| Bst2UI | CCWGG | 1 cut(s) | 192 |
| Bst4CI | ACNGT | 2 cut(s) | 404, 437 |
| Bst6I | CTCTTC | 1 cut(s) | 543 |
| BstC8I | GCNNGC | 5 cut(s) | 31, 105, 152, 156, 518 |
| BstDEI | CTNAG | 1 cut(s) | 2 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 2 cut(s) | 47, 51 |
| BstH2I | RGCGCY | 1 cut(s) | 399 |
| BstHHI | GCGC | 1 cut(s) | 398 |
| BstMAI | GTCTC | 1 cut(s) | 44 |
| BstMCI | CGRYCG | 1 cut(s) | 456 |
| BstNI | CCWGG | 1 cut(s) | 192 |
| BstSCI | CCNGG | 1 cut(s) | 190 |
| BstSLI | GKGCMC | 1 cut(s) | 217 |
| BstV1I | GCAGC | 1 cut(s) | 405 |
| Bsu15I | ATCGAT | 1 cut(s) | 321 |
| BsuRI | GGCC | 6 cut(s) | 61, 103, 150, 247, 380, 564 |
| BsuTUI | ATCGAT | 1 cut(s) | 321 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtsCI | GGATG | 2 cut(s) | 47, 51 |
| BtsIMutI | CAGTG | 3 cut(s) | 306, 409, 522 |
| Cac8I | GCNNGC | 5 cut(s) | 31, 105, 152, 156, 518 |
| CfoI | GCGC | 1 cut(s) | 398 |
| Cfr10I | RCCGGY | 1 cut(s) | 455 |
| Cfr13I | GGNCC | 3 cut(s) | 60, 101, 379 |
| ClaI | ATCGAT | 1 cut(s) | 321 |
| CseI | GACGC | 1 cut(s) | 125 |
| Csp6I | GTAC | 1 cut(s) | 528 |
| CviAII | CATG | 3 cut(s) | 341, 376, 386 |
| CviQI | GTAC | 1 cut(s) | 528 |
| DdeI | CTNAG | 1 cut(s) | 2 |
| EaeI | YGGCCR | 2 cut(s) | 245, 562 |
| Eam1104I | CTCTTC | 1 cut(s) | 543 |
| EarI | CTCTTC | 1 cut(s) | 543 |
| EciI | GGCGGA | 1 cut(s) | 474 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco24I | GRGCYC | 1 cut(s) | 579 |
| Eco47III | AGCGCT | 1 cut(s) | 397 |
| EcoO109I | RGGNCCY | 1 cut(s) | 60 |
| EcoRII | CCWGG | 1 cut(s) | 190 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| EcoT38I | GRGCYC | 1 cut(s) | 579 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| Esp3I | CGTCTC | 1 cut(s) | 44 |
| FaeI | CATG | 3 cut(s) | 344, 379, 389 |
| FaiI | YATR | 7 cut(s) | 57, 334, 342, 377, 387, 421, 430 |
| FatI | CATG | 3 cut(s) | 340, 375, 385 |
| FauI | CCCGC | 1 cut(s) | 163 |
| FblI | GTMKAC | 1 cut(s) | 163 |
| Fnu4HI | GCNGC | 2 cut(s) | 394, 565 |
| FokI | GGATG | 2 cut(s) | 34, 38 |
| FriOI | GRGCYC | 1 cut(s) | 579 |
| Fsp4HI | GCNGC | 2 cut(s) | 394, 565 |
| GlaI | GCGC | 1 cut(s) | 397 |
| GluI | GCNGC | 2 cut(s) | 394, 565 |
| GsuI | CTGGAG | 1 cut(s) | 213 |
| HaeII | RGCGCY | 1 cut(s) | 399 |
| HaeIII | GGCC | 6 cut(s) | 61, 103, 150, 247, 380, 564 |
| HapII | CCGG | 1 cut(s) | 456 |
| HgaI | GACGC | 1 cut(s) | 125 |
| HhaI | GCGC | 1 cut(s) | 398 |
| Hin1II | CATG | 3 cut(s) | 344, 379, 389 |
| Hin6I | GCGC | 1 cut(s) | 396 |
| HinP1I | GCGC | 1 cut(s) | 396 |
| HincII | GTYRAC | 1 cut(s) | 164 |
| HindII | GTYRAC | 1 cut(s) | 164 |
| HinfI | GANTC | 4 cut(s) | 187, 353, 462, 535 |
| HpaII | CCGG | 1 cut(s) | 456 |
| HphI | GGTGA | 2 cut(s) | 292, 358 |
| Hpy166II | GTNNAC | 1 cut(s) | 164 |
| Hpy188I | TCNGA | 1 cut(s) | 182 |
| Hpy188III | TCNNGA | 1 cut(s) | 440 |
| Hpy8I | GTNNAC | 1 cut(s) | 164 |
| Hpy99I | CGWCG | 2 cut(s) | 165, 550 |
| HpyAV | CCTTC | 3 cut(s) | 80, 177, 373 |
| HpyCH4III | ACNGT | 2 cut(s) | 404, 437 |
| HpyCH4V | TGCA | 2 cut(s) | 504, 516 |
| HpyF3I | CTNAG | 1 cut(s) | 2 |
| Hsp92II | CATG | 3 cut(s) | 344, 379, 389 |
| HspAI | GCGC | 1 cut(s) | 396 |
| LmnI | GCTCC | 1 cut(s) | 413 |
| Lsp1109I | GCAGC | 1 cut(s) | 405 |
| LweI | GCATC | 2 cut(s) | 30, 121 |
| MbiI | CCGCTC | 1 cut(s) | 158 |
| MboII | GAAGA | 2 cut(s) | 490, 530 |
| MhlI | GDGCHC | 4 cut(s) | 31, 217, 447, 579 |
| MluCI | AATT | 3 cut(s) | 74, 347, 491 |
| MlyI | GAGTC | 3 cut(s) | 181, 347, 529 |
| MmeI | TCCRAC | 1 cut(s) | 105 |
| MnlI | CCTC | 5 cut(s) | 188, 262, 379, 520, 563 |
| MspI | CCGG | 1 cut(s) | 456 |
| MspR9I | CCNGG | 1 cut(s) | 192 |
| Mva1269I | GAATGC | 1 cut(s) | 33 |
| MvaI | CCWGG | 1 cut(s) | 192 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NlaIII | CATG | 3 cut(s) | 344, 379, 389 |
| NlaIV | GGNNCC | 4 cut(s) | 16, 102, 214, 409 |
| NmeAIII | GCCGAG | 1 cut(s) | 558 |
| PctI | GAATGC | 1 cut(s) | 33 |
| PfeI | GAWTC | 1 cut(s) | 462 |
| PfoI | TCCNGGA | 1 cut(s) | 190 |
| PkrI | GCNGC | 2 cut(s) | 395, 566 |
| PleI | GAGTC | 3 cut(s) | 181, 347, 529 |
| PpsI | GAGTC | 3 cut(s) | 181, 347, 529 |
| Psp6I | CCWGG | 1 cut(s) | 190 |
| PspGI | CCWGG | 1 cut(s) | 190 |
| PspN4I | GGNNCC | 4 cut(s) | 16, 102, 214, 409 |
| PspPI | GGNCC | 3 cut(s) | 60, 101, 379 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 321, 353 |
| RsaI | GTAC | 1 cut(s) | 529 |
| RsaNI | GTAC | 1 cut(s) | 528 |
| SalI | GTCGAC | 1 cut(s) | 162 |
| SatI | GCNGC | 2 cut(s) | 394, 565 |
| Sau96I | GGNCC | 3 cut(s) | 60, 101, 379 |
| SchI | GAGTC | 3 cut(s) | 181, 347, 529 |
| ScrFI | CCNGG | 1 cut(s) | 192 |
| SduI | GDGCHC | 4 cut(s) | 31, 217, 447, 579 |
| SetI | ASST | 2 cut(s) | 365, 371 |
| SfaNI | GCATC | 2 cut(s) | 30, 121 |
| Sse9I | AATT | 3 cut(s) | 74, 347, 491 |
| SsiI | CCGC | 4 cut(s) | 156, 416, 459, 565 |
| StyD4I | CCNGG | 1 cut(s) | 190 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaaI | ACNGT | 2 cut(s) | 404, 437 |
| TaqI | TCGA | 5 cut(s) | 163, 226, 321, 371, 439 |
| TasI | AATT | 3 cut(s) | 74, 347, 491 |
| TauI | GCSGC | 1 cut(s) | 567 |
| TfiI | GAWTC | 1 cut(s) | 462 |
| TscAI | CASTG | 3 cut(s) | 313, 409, 529 |
| TseI | GCWGC | 1 cut(s) | 393 |
| TspDTI | ATGAA | 1 cut(s) | 484 |
| TspGWI | ACGGA | 1 cut(s) | 108 |
| TspRI | CASTG | 3 cut(s) | 313, 409, 529 |
| XapI | RAATTY | 1 cut(s) | 491 |
| XmiI | GTMKAC | 1 cut(s) | 163 |