Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 248, 572 |
| AccB1I | GGYRCC | 1 cut(s) | 146 |
| AccBSI | CCGCTC | 1 cut(s) | 319 |
| AccI | GTMKAC | 1 cut(s) | 97 |
| AccII | CGCG | 7 cut(s) | 226, 232, 298, 300, 323, 526, 560 |
| AciI | CCGC | 8 cut(s) | 226, 296, 300, 317, 323, 348, 524, 567 |
| AcoI | YGGCCR | 3 cut(s) | 60, 179, 451 |
| AcsI | RAATTY | 1 cut(s) | 599 |
| AfaI | GTAC | 2 cut(s) | 587, 637 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 171, 431 |
| AjnI | CCWGG | 2 cut(s) | 124, 579 |
| AluBI | AGCT | 3 cut(s) | 141, 242, 312 |
| AluI | AGCT | 3 cut(s) | 141, 242, 312 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 141 |
| AoxI | GGCC | 6 cut(s) | 35, 60, 82, 179, 324, 451 |
| ApeKI | GCWGC | 2 cut(s) | 254, 501 |
| ApoI | RAATTY | 1 cut(s) | 599 |
| AspLEI | GCGC | 3 cut(s) | 232, 300, 506 |
| AspS9I | GGNCC | 1 cut(s) | 35 |
| AsuC2I | CCSGG | 1 cut(s) | 548 |
| AsuHPI | GGTGA | 2 cut(s) | 382, 466 |
| BaeGI | GKGCMC | 1 cut(s) | 151 |
| BalI | TGGCCA | 1 cut(s) | 453 |
| BanI | GGYRCC | 1 cut(s) | 146 |
| BbvI | GCAGC | 2 cut(s) | 266, 513 |
| BccI | CCATC | 4 cut(s) | 297, 419, 425, 522 |
| BceAI | ACGGC | 2 cut(s) | 97, 166 |
| BciT130I | CCWGG | 2 cut(s) | 126, 581 |
| BcnI | CCSGG | 1 cut(s) | 548 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BfaI | CTAG | 1 cut(s) | 239 |
| BfoI | RGCGCY | 1 cut(s) | 507 |
| BfuAI | ACCTGC | 2 cut(s) | 248, 572 |
| BglII | AGATCT | 1 cut(s) | 235 |
| BisI | GCNGC | 5 cut(s) | 255, 301, 317, 324, 502 |
| BlsI | GCNGC | 5 cut(s) | 256, 302, 318, 325, 503 |
| BmcAI | AGTACT | 1 cut(s) | 587 |
| Bme1390I | CCNGG | 3 cut(s) | 126, 548, 581 |
| BmgT120I | GGNCC | 1 cut(s) | 35 |
| BmiI | GGNNCC | 3 cut(s) | 36, 148, 517 |
| BmrFI | CCNGG | 3 cut(s) | 126, 548, 581 |
| BmrI | ACTGGG | 1 cut(s) | 41 |
| BmsI | GCATC | 2 cut(s) | 40, 396 |
| BmuI | ACTGGG | 1 cut(s) | 41 |
| BpmI | CTGGAG | 2 cut(s) | 147, 602 |
| BpuMI | CCSGG | 1 cut(s) | 548 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 171, 431 |
| Bse1I | ACTGG | 5 cut(s) | 31, 36, 107, 593, 637 |
| BseBI | CCWGG | 2 cut(s) | 126, 581 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 171, 431 |
| BseNI | ACTGG | 5 cut(s) | 31, 36, 107, 593, 637 |
| BseSI | GKGCMC | 1 cut(s) | 151 |
| BseX3I | CGGCCG | 1 cut(s) | 60 |
| BseXI | GCAGC | 2 cut(s) | 266, 513 |
| BseYI | CCCAGC | 3 cut(s) | 141, 196, 489 |
| BsgI | GTGCAG | 1 cut(s) | 595 |
| Bsh1236I | CGCG | 7 cut(s) | 226, 232, 298, 300, 323, 526, 560 |
| Bsh1285I | CGRYCG | 2 cut(s) | 63, 499 |
| BshFI | GGCC | 6 cut(s) | 37, 62, 84, 181, 326, 453 |
| BshNI | GGYRCC | 1 cut(s) | 146 |
| BsiEI | CGRYCG | 2 cut(s) | 63, 499 |
| BsiSI | CCGG | 2 cut(s) | 59, 547 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 171, 431 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsmI | GAATGC | 1 cut(s) | 256 |
| BsnI | GGCC | 6 cut(s) | 37, 62, 84, 181, 326, 453 |
| Bsp1286I | GDGCHC | 1 cut(s) | 151 |
| Bsp143I | GATC | 2 cut(s) | 235, 277 |
| BspACI | CCGC | 8 cut(s) | 226, 296, 300, 317, 323, 348, 524, 567 |
| BspANI | GGCC | 6 cut(s) | 37, 62, 84, 181, 326, 453 |
| BspFNI | CGCG | 7 cut(s) | 226, 232, 298, 300, 323, 526, 560 |
| BspLI | GGNNCC | 3 cut(s) | 36, 148, 517 |
| BspMI | ACCTGC | 2 cut(s) | 248, 572 |
| BspT107I | GGYRCC | 1 cut(s) | 146 |
| BsrBI | CCGCTC | 1 cut(s) | 319 |
| BsrI | ACTGG | 5 cut(s) | 31, 36, 107, 593, 637 |
| BssMI | GATC | 2 cut(s) | 235, 277 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 581 |
| Bst4CI | ACNGT | 1 cut(s) | 497 |
| Bst6I | CTCTTC | 1 cut(s) | 622 |
| BstC8I | GCNNGC | 8 cut(s) | 39, 228, 244, 314, 321, 422, 534, 626 |
| BstFNI | CGCG | 7 cut(s) | 226, 232, 298, 300, 323, 526, 560 |
| BstH2I | RGCGCY | 1 cut(s) | 507 |
| BstHHI | GCGC | 3 cut(s) | 232, 300, 506 |
| BstKTI | GATC | 2 cut(s) | 238, 280 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 2 cut(s) | 235, 277 |
| BstMCI | CGRYCG | 2 cut(s) | 63, 499 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 59, 309 |
| BstNI | CCWGG | 2 cut(s) | 126, 581 |
| BstSCI | CCNGG | 3 cut(s) | 124, 546, 579 |
| BstSLI | GKGCMC | 1 cut(s) | 151 |
| BstUI | CGCG | 7 cut(s) | 226, 232, 298, 300, 323, 526, 560 |
| BstV1I | GCAGC | 2 cut(s) | 266, 513 |
| BstX2I | RGATCY | 1 cut(s) | 235 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 26 |
| BstYI | RGATCY | 1 cut(s) | 235 |
| BstZI | CGGCCG | 1 cut(s) | 60 |
| BsuRI | GGCC | 6 cut(s) | 37, 62, 84, 181, 326, 453 |
| BtgZI | GCGATG | 1 cut(s) | 541 |
| BtsIMutI | CAGTG | 1 cut(s) | 630 |
| BveI | ACCTGC | 2 cut(s) | 248, 572 |
| Cac8I | GCNNGC | 8 cut(s) | 39, 228, 244, 314, 321, 422, 534, 626 |
| CaiI | CAGNNNCTG | 1 cut(s) | 141 |
| CfoI | GCGC | 3 cut(s) | 232, 300, 506 |
| Cfr13I | GGNCC | 1 cut(s) | 35 |
| CseI | GACGC | 1 cut(s) | 74 |
| Csp6I | GTAC | 2 cut(s) | 586, 636 |
| CviAII | CATG | 2 cut(s) | 449, 484 |
| CviQI | GTAC | 2 cut(s) | 586, 636 |
| DpnI | GATC | 2 cut(s) | 237, 279 |
| DpnII | GATC | 2 cut(s) | 235, 277 |
| EaeI | YGGCCR | 3 cut(s) | 60, 179, 451 |
| EagI | CGGCCG | 1 cut(s) | 60 |
| Eam1104I | CTCTTC | 1 cut(s) | 622 |
| EarI | CTCTTC | 1 cut(s) | 622 |
| EclXI | CGGCCG | 1 cut(s) | 60 |
| Eco52I | CGGCCG | 1 cut(s) | 60 |
| EcoRII | CCWGG | 2 cut(s) | 124, 579 |
| FaeI | CATG | 2 cut(s) | 452, 487 |
| FaiI | YATR | 6 cut(s) | 270, 283, 450, 485, 510, 543 |
| FatI | CATG | 2 cut(s) | 448, 483 |
| FauI | CCCGC | 3 cut(s) | 219, 303, 531 |
| FblI | GTMKAC | 1 cut(s) | 97 |
| Fnu4HI | GCNGC | 5 cut(s) | 255, 301, 317, 324, 502 |
| Fsp4HI | GCNGC | 5 cut(s) | 255, 301, 317, 324, 502 |
| FspBI | CTAG | 1 cut(s) | 239 |
| GlaI | GCGC | 3 cut(s) | 231, 299, 505 |
| GluI | GCNGC | 5 cut(s) | 255, 301, 317, 324, 502 |
| GsaI | CCCAGC | 3 cut(s) | 145, 200, 493 |
| GsuI | CTGGAG | 2 cut(s) | 147, 602 |
| HaeII | RGCGCY | 1 cut(s) | 507 |
| HaeIII | GGCC | 6 cut(s) | 37, 62, 84, 181, 326, 453 |
| HapII | CCGG | 2 cut(s) | 59, 547 |
| HgaI | GACGC | 1 cut(s) | 74 |
| HhaI | GCGC | 3 cut(s) | 232, 300, 506 |
| Hin1II | CATG | 2 cut(s) | 452, 487 |
| Hin6I | GCGC | 3 cut(s) | 230, 298, 504 |
| HinP1I | GCGC | 3 cut(s) | 230, 298, 504 |
| HincII | GTYRAC | 2 cut(s) | 98, 469 |
| HindII | GTYRAC | 2 cut(s) | 98, 469 |
| HinfI | GANTC | 5 cut(s) | 9, 121, 372, 461, 570 |
| HpaII | CCGG | 2 cut(s) | 59, 547 |
| HphI | GGTGA | 2 cut(s) | 382, 466 |
| Hpy166II | GTNNAC | 2 cut(s) | 98, 469 |
| Hpy188I | TCNGA | 2 cut(s) | 16, 116 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 340 |
| Hpy8I | GTNNAC | 2 cut(s) | 98, 469 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 99 |
| HpyCH4III | ACNGT | 1 cut(s) | 497 |
| HpyCH4V | TGCA | 4 cut(s) | 254, 597, 612, 624 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 59, 309 |
| Hsp92II | CATG | 2 cut(s) | 452, 487 |
| HspAI | GCGC | 3 cut(s) | 230, 298, 504 |
| Kzo9I | GATC | 2 cut(s) | 235, 277 |
| LmnI | GCTCC | 1 cut(s) | 521 |
| Lsp1109I | GCAGC | 2 cut(s) | 266, 513 |
| LweI | GCATC | 2 cut(s) | 40, 396 |
| MaeI | CTAG | 1 cut(s) | 239 |
| MalI | GATC | 2 cut(s) | 237, 279 |
| MbiI | CCGCTC | 1 cut(s) | 319 |
| MboI | GATC | 2 cut(s) | 235, 277 |
| MboII | GAAGA | 2 cut(s) | 598, 609 |
| MflI | RGATCY | 1 cut(s) | 235 |
| MhlI | GDGCHC | 1 cut(s) | 151 |
| MlsI | TGGCCA | 1 cut(s) | 453 |
| MluCI | AATT | 2 cut(s) | 455, 599 |
| MluNI | TGGCCA | 1 cut(s) | 453 |
| MlyI | GAGTC | 1 cut(s) | 115 |
| MmeI | TCCRAC | 1 cut(s) | 39 |
| MnlI | CCTC | 4 cut(s) | 122, 196, 487, 625 |
| Mox20I | TGGCCA | 1 cut(s) | 453 |
| MscI | TGGCCA | 1 cut(s) | 453 |
| Msp20I | TGGCCA | 1 cut(s) | 453 |
| MspI | CCGG | 2 cut(s) | 59, 547 |
| MspR9I | CCNGG | 3 cut(s) | 126, 548, 581 |
| Mva1269I | GAATGC | 1 cut(s) | 256 |
| MvaI | CCWGG | 2 cut(s) | 126, 581 |
| MvnI | CGCG | 7 cut(s) | 226, 232, 298, 300, 323, 526, 560 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 59, 309 |
| NciI | CCSGG | 1 cut(s) | 548 |
| NdeII | GATC | 2 cut(s) | 235, 277 |
| NlaIII | CATG | 2 cut(s) | 452, 487 |
| NlaIV | GGNNCC | 3 cut(s) | 36, 148, 517 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 87 |
| PctI | GAATGC | 1 cut(s) | 256 |
| PfeI | GAWTC | 4 cut(s) | 9, 372, 461, 570 |
| PfoI | TCCNGGA | 2 cut(s) | 124, 579 |
| PkrI | GCNGC | 5 cut(s) | 256, 302, 318, 325, 503 |
| PleI | GAGTC | 1 cut(s) | 115 |
| PpsI | GAGTC | 1 cut(s) | 115 |
| Psp6I | CCWGG | 2 cut(s) | 124, 579 |
| PspFI | CCCAGC | 3 cut(s) | 141, 196, 489 |
| PspGI | CCWGG | 2 cut(s) | 124, 579 |
| PspN4I | GGNNCC | 3 cut(s) | 36, 148, 517 |
| PspPI | GGNCC | 1 cut(s) | 35 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 429, 461 |
| PstNI | CAGNNNCTG | 1 cut(s) | 141 |
| PsuI | RGATCY | 1 cut(s) | 235 |
| RsaI | GTAC | 2 cut(s) | 587, 637 |
| RsaNI | GTAC | 2 cut(s) | 586, 636 |
| SalI | GTCGAC | 1 cut(s) | 96 |
| SatI | GCNGC | 5 cut(s) | 255, 301, 317, 324, 502 |
| Sau3AI | GATC | 2 cut(s) | 235, 277 |
| Sau96I | GGNCC | 1 cut(s) | 35 |
| ScaI | AGTACT | 1 cut(s) | 587 |
| SchI | GAGTC | 1 cut(s) | 115 |
| ScrFI | CCNGG | 3 cut(s) | 126, 548, 581 |
| SduI | GDGCHC | 1 cut(s) | 151 |
| SetI | ASST | 7 cut(s) | 143, 244, 262, 314, 479, 566, 617 |
| SfaNI | GCATC | 2 cut(s) | 40, 396 |
| Sse9I | AATT | 2 cut(s) | 455, 599 |
| SsiI | CCGC | 8 cut(s) | 226, 296, 300, 317, 323, 348, 524, 567 |
| SspMI | CTAG | 1 cut(s) | 239 |
| StyD4I | CCNGG | 3 cut(s) | 124, 546, 579 |
| TaaI | ACNGT | 1 cut(s) | 497 |
| TaqI | TCGA | 4 cut(s) | 7, 97, 160, 459 |
| TasI | AATT | 2 cut(s) | 455, 599 |
| TatI | WGTACW | 1 cut(s) | 585 |
| TauI | GCSGC | 3 cut(s) | 303, 319, 326 |
| TfiI | GAWTC | 4 cut(s) | 9, 372, 461, 570 |
| TscAI | CASTG | 1 cut(s) | 637 |
| TseI | GCWGC | 2 cut(s) | 254, 501 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| TspRI | CASTG | 1 cut(s) | 637 |
| XapI | RAATTY | 1 cut(s) | 599 |
| XmiI | GTMKAC | 1 cut(s) | 97 |
| XspI | CTAG | 1 cut(s) | 239 |
| ZrmI | AGTACT | 1 cut(s) | 587 |