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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 118, 314 |
| AciI | CCGC | 2 cut(s) | 122, 379 |
| AcoI | YGGCCR | 2 cut(s) | 172, 342 |
| AcyI | GRCGYC | 1 cut(s) | 119 |
| AfaI | GTAC | 2 cut(s) | 323, 364 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 20, 21, 276, 283, 324, 351, 365, 385 |
| AgsI | TTSAA | 1 cut(s) | 283 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 304 |
| AhlI | ACTAGT | 1 cut(s) | 58 |
| AluBI | AGCT | 2 cut(s) | 334, 441 |
| AluI | AGCT | 2 cut(s) | 334, 441 |
| AoxI | GGCC | 5 cut(s) | 160, 172, 342, 375, 388 |
| ApaI | GGGCCC | 1 cut(s) | 379 |
| AspLEI | GCGC | 2 cut(s) | 40, 121 |
| AspS9I | GGNCC | 5 cut(s) | 113, 356, 375, 376, 388 |
| AsuC2I | CCSGG | 2 cut(s) | 111, 277 |
| AsuHPI | GGTGA | 1 cut(s) | 99 |
| AvaII | GGWCC | 2 cut(s) | 113, 356 |
| BaeGI | GKGCMC | 1 cut(s) | 379 |
| BanI | GGYRCC | 2 cut(s) | 118, 314 |
| BanII | GRGCYC | 1 cut(s) | 379 |
| BbsI | GAAGAC | 2 cut(s) | 261, 437 |
| BccI | CCATC | 2 cut(s) | 140, 176 |
| BceAI | ACGGC | 3 cut(s) | 29, 329, 375 |
| BcnI | CCSGG | 2 cut(s) | 111, 277 |
| BcuI | ACTAGT | 1 cut(s) | 58 |
| BfaI | CTAG | 2 cut(s) | 29, 59 |
| BfoI | RGCGCY | 2 cut(s) | 41, 122 |
| BisI | GCNGC | 1 cut(s) | 122 |
| BlsI | GCNGC | 1 cut(s) | 123 |
| Bme1390I | CCNGG | 2 cut(s) | 111, 277 |
| Bme18I | GGWCC | 2 cut(s) | 113, 356 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 5 cut(s) | 113, 356, 375, 376, 388 |
| BmiI | GGNNCC | 5 cut(s) | 114, 120, 316, 357, 377 |
| BmrFI | CCNGG | 2 cut(s) | 111, 277 |
| BmsI | GCATC | 1 cut(s) | 41 |
| BpiI | GAAGAC | 2 cut(s) | 261, 437 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 323, 355 |
| BpuMI | CCSGG | 2 cut(s) | 111, 277 |
| BsaHI | GRCGYC | 1 cut(s) | 119 |
| BsaJI | CCNNGG | 3 cut(s) | 82, 259, 275 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 20, 21, 276, 283, 324, 351, 365, 385 |
| BseDI | CCNNGG | 3 cut(s) | 82, 259, 275 |
| BseGI | GGATG | 3 cut(s) | 50, 132, 150 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 20, 21, 276, 283, 324, 351, 365, 385 |
| BseRI | GAGGAG | 2 cut(s) | 71, 423 |
| BseSI | GKGCMC | 1 cut(s) | 379 |
| BseX3I | CGGCCG | 2 cut(s) | 172, 342 |
| Bsh1285I | CGRYCG | 2 cut(s) | 175, 345 |
| BshFI | GGCC | 5 cut(s) | 162, 174, 344, 377, 390 |
| BshNI | GGYRCC | 2 cut(s) | 118, 314 |
| BsiEI | CGRYCG | 2 cut(s) | 175, 345 |
| BsiSI | CCGG | 3 cut(s) | 110, 116, 277 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 20, 21, 276, 283, 324, 351, 365, 385 |
| BsnI | GGCC | 5 cut(s) | 162, 174, 344, 377, 390 |
| Bsp120I | GGGCCC | 1 cut(s) | 375 |
| Bsp1286I | GDGCHC | 1 cut(s) | 379 |
| BspACI | CCGC | 2 cut(s) | 122, 379 |
| BspANI | GGCC | 5 cut(s) | 162, 174, 344, 377, 390 |
| BspLI | GGNNCC | 5 cut(s) | 114, 120, 316, 357, 377 |
| BspQI | GCTCTTC | 1 cut(s) | 324 |
| BspT107I | GGYRCC | 2 cut(s) | 118, 314 |
| BssECI | CCNNGG | 3 cut(s) | 82, 259, 275 |
| BssNI | GRCGYC | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 1 cut(s) | 260 |
| Bst6I | CTCTTC | 1 cut(s) | 324 |
| BstACI | GRCGYC | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 3 cut(s) | 42, 207, 379 |
| BstDSI | CCRYGG | 1 cut(s) | 259 |
| BstF5I | GGATG | 3 cut(s) | 50, 132, 150 |
| BstH2I | RGCGCY | 2 cut(s) | 41, 122 |
| BstHHI | GCGC | 2 cut(s) | 40, 121 |
| BstMCI | CGRYCG | 2 cut(s) | 175, 345 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 387 |
| BstSCI | CCNGG | 2 cut(s) | 109, 275 |
| BstSLI | GKGCMC | 1 cut(s) | 379 |
| BstV2I | GAAGAC | 2 cut(s) | 261, 437 |
| BstZI | CGGCCG | 2 cut(s) | 172, 342 |
| BsuRI | GGCC | 5 cut(s) | 162, 174, 344, 377, 390 |
| BtgI | CCRYGG | 1 cut(s) | 259 |
| BtsCI | GGATG | 3 cut(s) | 50, 132, 150 |
| Cac8I | GCNNGC | 3 cut(s) | 42, 207, 379 |
| CfoI | GCGC | 2 cut(s) | 40, 121 |
| Cfr13I | GGNCC | 5 cut(s) | 113, 356, 375, 376, 388 |
| CseI | GACGC | 1 cut(s) | 152 |
| Csp6I | GTAC | 2 cut(s) | 322, 363 |
| CviAII | CATG | 1 cut(s) | 296 |
| CviJI | RGCY | 8 cut(s) | 162, 174, 219, 334, 344, 377, 390, 441 |
| CviKI_1 | RGCY | 8 cut(s) | 162, 174, 219, 334, 344, 377, 390, 441 |
| CviQI | GTAC | 2 cut(s) | 322, 363 |
| DinI | GGCGCC | 1 cut(s) | 120 |
| DriI | GACNNNNNGTC | 1 cut(s) | 304 |
| EaeI | YGGCCR | 2 cut(s) | 172, 342 |
| EagI | CGGCCG | 2 cut(s) | 172, 342 |
| Eam1104I | CTCTTC | 1 cut(s) | 324 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 304 |
| EarI | CTCTTC | 1 cut(s) | 324 |
| EclXI | CGGCCG | 2 cut(s) | 172, 342 |
| Eco24I | GRGCYC | 1 cut(s) | 379 |
| Eco47I | GGWCC | 2 cut(s) | 113, 356 |
| Eco52I | CGGCCG | 2 cut(s) | 172, 342 |
| EcoO109I | RGGNCCY | 1 cut(s) | 375 |
| EcoT38I | GRGCYC | 1 cut(s) | 379 |
| EgeI | GGCGCC | 1 cut(s) | 120 |
| EheI | GGCGCC | 1 cut(s) | 120 |
| FaeI | CATG | 1 cut(s) | 299 |
| FaiI | YATR | 5 cut(s) | 17, 56, 102, 159, 297 |
| FatI | CATG | 1 cut(s) | 295 |
| FauI | CCCGC | 1 cut(s) | 386 |
| Fnu4HI | GCNGC | 1 cut(s) | 122 |
| FokI | GGATG | 3 cut(s) | 37, 119, 137 |
| FriOI | GRGCYC | 1 cut(s) | 379 |
| Fsp4HI | GCNGC | 1 cut(s) | 122 |
| FspBI | CTAG | 2 cut(s) | 29, 59 |
| GlaI | GCGC | 2 cut(s) | 39, 120 |
| GluI | GCNGC | 1 cut(s) | 122 |
| HaeII | RGCGCY | 2 cut(s) | 41, 122 |
| HaeIII | GGCC | 5 cut(s) | 162, 174, 344, 377, 390 |
| HapII | CCGG | 3 cut(s) | 110, 116, 277 |
| HgaI | GACGC | 1 cut(s) | 152 |
| HhaI | GCGC | 2 cut(s) | 40, 121 |
| Hin1I | GRCGYC | 1 cut(s) | 119 |
| Hin1II | CATG | 1 cut(s) | 299 |
| Hin6I | GCGC | 2 cut(s) | 38, 119 |
| HinP1I | GCGC | 2 cut(s) | 38, 119 |
| HinfI | GANTC | 4 cut(s) | 87, 128, 198, 433 |
| HpaII | CCGG | 3 cut(s) | 110, 116, 277 |
| HphI | GGTGA | 1 cut(s) | 99 |
| Hpy166II | GTNNAC | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 2 cut(s) | 86, 193 |
| Hpy188III | TCNNGA | 2 cut(s) | 136, 247 |
| Hpy8I | GTNNAC | 1 cut(s) | 415 |
| Hpy99I | CGWCG | 2 cut(s) | 13, 146 |
| HpyAV | CCTTC | 1 cut(s) | 188 |
| HpyCH4III | ACNGT | 1 cut(s) | 260 |
| HpyCH4V | TGCA | 1 cut(s) | 205 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 387 |
| Hsp92I | GRCGYC | 1 cut(s) | 119 |
| Hsp92II | CATG | 1 cut(s) | 299 |
| HspAI | GCGC | 2 cut(s) | 38, 119 |
| KasI | GGCGCC | 1 cut(s) | 118 |
| LguI | GCTCTTC | 1 cut(s) | 324 |
| LmnI | GCTCC | 1 cut(s) | 84 |
| LpnPI | CCDG | 3 cut(s) | 123, 129, 290 |
| LweI | GCATC | 1 cut(s) | 41 |
| MaeI | CTAG | 2 cut(s) | 29, 59 |
| MaeIII | GTNAC | 1 cut(s) | 46 |
| MboII | GAAGA | 3 cut(s) | 266, 341, 442 |
| MfeI | CAATTG | 1 cut(s) | 309 |
| MhlI | GDGCHC | 1 cut(s) | 379 |
| MluCI | AATT | 3 cut(s) | 288, 309, 396 |
| Mly113I | GGCGCC | 1 cut(s) | 119 |
| MlyI | GAGTC | 3 cut(s) | 81, 192, 427 |
| MmeI | TCCRAC | 1 cut(s) | 193 |
| MnlI | CCTC | 6 cut(s) | 83, 92, 115, 164, 199, 401 |
| MseI | TTAA | 1 cut(s) | 336 |
| MslI | CAYNNNNRTG | 1 cut(s) | 59 |
| MspI | CCGG | 3 cut(s) | 110, 116, 277 |
| MspR9I | CCNGG | 2 cut(s) | 111, 277 |
| MunI | CAATTG | 1 cut(s) | 309 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 387 |
| NarI | GGCGCC | 1 cut(s) | 119 |
| NciI | CCSGG | 2 cut(s) | 111, 277 |
| NlaIII | CATG | 1 cut(s) | 299 |
| NlaIV | GGNNCC | 5 cut(s) | 114, 120, 316, 357, 377 |
| NmeAIII | GCCGAG | 2 cut(s) | 320, 343 |
| NmuCI | GTSAC | 1 cut(s) | 46 |
| PciSI | GCTCTTC | 1 cut(s) | 324 |
| PfeI | GAWTC | 1 cut(s) | 128 |
| PflFI | GACNNNGTC | 1 cut(s) | 146 |
| PkrI | GCNGC | 1 cut(s) | 123 |
| PleI | GAGTC | 3 cut(s) | 81, 192, 427 |
| PluTI | GGCGCC | 1 cut(s) | 122 |
| PpsI | GAGTC | 3 cut(s) | 81, 192, 427 |
| PspN4I | GGNNCC | 5 cut(s) | 114, 120, 316, 357, 377 |
| PspOMI | GGGCCC | 1 cut(s) | 375 |
| PspPI | GGNCC | 5 cut(s) | 113, 356, 375, 376, 388 |
| PsyI | GACNNNGTC | 1 cut(s) | 146 |
| RsaI | GTAC | 2 cut(s) | 323, 364 |
| RsaNI | GTAC | 2 cut(s) | 322, 363 |
| RseI | CAYNNNNRTG | 1 cut(s) | 59 |
| SapI | GCTCTTC | 1 cut(s) | 324 |
| SaqAI | TTAA | 1 cut(s) | 336 |
| SatI | GCNGC | 1 cut(s) | 122 |
| Sau96I | GGNCC | 5 cut(s) | 113, 356, 375, 376, 388 |
| SchI | GAGTC | 3 cut(s) | 81, 192, 427 |
| ScrFI | CCNGG | 2 cut(s) | 111, 277 |
| SduI | GDGCHC | 1 cut(s) | 379 |
| SetI | ASST | 3 cut(s) | 75, 336, 443 |
| SfaNI | GCATC | 1 cut(s) | 41 |
| SfoI | GGCGCC | 1 cut(s) | 120 |
| SinI | GGWCC | 2 cut(s) | 113, 356 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 59 |
| SpeI | ACTAGT | 1 cut(s) | 58 |
| Sse9I | AATT | 3 cut(s) | 288, 309, 396 |
| SsiI | CCGC | 2 cut(s) | 122, 379 |
| SspDI | GGCGCC | 1 cut(s) | 118 |
| SspMI | CTAG | 2 cut(s) | 29, 59 |
| StyD4I | CCNGG | 2 cut(s) | 109, 275 |
| TaaI | ACNGT | 1 cut(s) | 260 |
| TaqI | TCGA | 1 cut(s) | 436 |
| TaqII | GACCGA | 1 cut(s) | 266 |
| TasI | AATT | 3 cut(s) | 288, 309, 396 |
| TauI | GCSGC | 1 cut(s) | 124 |
| TfiI | GAWTC | 1 cut(s) | 128 |
| Tru1I | TTAA | 1 cut(s) | 336 |
| Tru9I | TTAA | 1 cut(s) | 336 |
| TseFI | GTSAC | 1 cut(s) | 46 |
| Tsp45I | GTSAC | 1 cut(s) | 46 |
| TspGWI | ACGGA | 1 cut(s) | 174 |
| Tth111I | GACNNNGTC | 1 cut(s) | 146 |
| VpaK11BI | GGWCC | 2 cut(s) | 113, 356 |
| XspI | CTAG | 2 cut(s) | 29, 59 |