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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 123, 483 |
| AccB1I | GGYRCC | 3 cut(s) | 123, 483, 617 |
| AccI | GTMKAC | 2 cut(s) | 17, 564 |
| AccII | CGCG | 6 cut(s) | 224, 303, 355, 446, 591, 989 |
| AccIII | TCCGGA | 1 cut(s) | 577 |
| AclWI | GGATC | 3 cut(s) | 818, 825, 884 |
| AcyI | GRCGYC | 1 cut(s) | 732 |
| AfaI | GTAC | 3 cut(s) | 125, 485, 690 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 19, 243, 814 |
| AgsI | TTSAA | 3 cut(s) | 253, 326, 605 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 597, 629 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 77, 109 |
| AluBI | AGCT | 3 cut(s) | 402, 784, 953 |
| AluI | AGCT | 3 cut(s) | 402, 784, 953 |
| Alw21I | GWGCWC | 1 cut(s) | 597 |
| Alw26I | GTCTC | 2 cut(s) | 63, 787 |
| AlwI | GGATC | 3 cut(s) | 818, 825, 884 |
| Ama87I | CYCGRG | 5 cut(s) | 172, 192, 214, 407, 748 |
| Aor13HI | TCCGGA | 1 cut(s) | 577 |
| AoxI | GGCC | 6 cut(s) | 268, 411, 759, 880, 914, 1003 |
| ApeKI | GCWGC | 4 cut(s) | 456, 584, 703, 953 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 80, 112 |
| Asp718I | GGTACC | 2 cut(s) | 123, 483 |
| AspLEI | GCGC | 1 cut(s) | 703 |
| AspS9I | GGNCC | 5 cut(s) | 50, 269, 360, 759, 915 |
| AsuC2I | CCSGG | 4 cut(s) | 46, 749, 750, 808 |
| AsuHPI | GGTGA | 3 cut(s) | 524, 668, 713 |
| AvaI | CYCGRG | 5 cut(s) | 172, 192, 214, 407, 748 |
| AvaII | GGWCC | 2 cut(s) | 50, 360 |
| BaeGI | GKGCMC | 2 cut(s) | 179, 715 |
| BanI | GGYRCC | 3 cut(s) | 123, 483, 617 |
| BanII | GRGCYC | 3 cut(s) | 309, 612, 829 |
| Bbv12I | GWGCWC | 1 cut(s) | 597 |
| BbvI | GCAGC | 4 cut(s) | 468, 571, 715, 940 |
| BccI | CCATC | 1 cut(s) | 377 |
| BceAI | ACGGC | 1 cut(s) | 671 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 80, 114, 935, 969 |
| BclI | TGATCA | 1 cut(s) | 514 |
| BcnI | CCSGG | 4 cut(s) | 46, 749, 750, 808 |
| BcoDI | GTCTC | 2 cut(s) | 63, 787 |
| BfaI | CTAG | 4 cut(s) | 464, 557, 849, 1009 |
| BisI | GCNGC | 7 cut(s) | 293, 457, 548, 585, 704, 889, 954 |
| BlsI | GCNGC | 7 cut(s) | 294, 458, 549, 586, 705, 890, 955 |
| Bme1390I | CCNGG | 4 cut(s) | 46, 749, 750, 808 |
| Bme18I | GGWCC | 2 cut(s) | 50, 360 |
| BmeT110I | CYCGRG | 5 cut(s) | 172, 192, 214, 407, 748 |
| BmgT120I | GGNCC | 5 cut(s) | 50, 269, 360, 759, 915 |
| BmiI | GGNNCC | 6 cut(s) | 51, 125, 202, 452, 485, 619 |
| BmrFI | CCNGG | 4 cut(s) | 46, 749, 750, 808 |
| BmsI | GCATC | 2 cut(s) | 476, 715 |
| BpuEI | CTTGAG | 2 cut(s) | 806, 821 |
| BpuMI | CCSGG | 4 cut(s) | 46, 749, 750, 808 |
| BsaHI | GRCGYC | 1 cut(s) | 732 |
| BsaJI | CCNNGG | 8 cut(s) | 29, 45, 408, 414, 621, 642, 747, 748 |
| BsaWI | WCCGGW | 3 cut(s) | 281, 577, 723 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 410, 440 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 19, 243, 814 |
| BseAI | TCCGGA | 1 cut(s) | 577 |
| BseDI | CCNNGG | 8 cut(s) | 29, 45, 408, 414, 621, 642, 747, 748 |
| BseGI | GGATG | 3 cut(s) | 91, 369, 400 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 19, 243, 814 |
| BseRI | GAGGAG | 2 cut(s) | 431, 803 |
| BseSI | GKGCMC | 2 cut(s) | 179, 715 |
| BseXI | GCAGC | 4 cut(s) | 468, 571, 715, 940 |
| Bsh1236I | CGCG | 6 cut(s) | 224, 303, 355, 446, 591, 989 |
| BshFI | GGCC | 6 cut(s) | 270, 413, 761, 882, 916, 1005 |
| BshNI | GGYRCC | 3 cut(s) | 123, 483, 617 |
| BsiHKAI | GWGCWC | 1 cut(s) | 597 |
| BsiHKCI | CYCGRG | 5 cut(s) | 172, 192, 214, 407, 748 |
| BsiSI | CCGG | 7 cut(s) | 45, 73, 282, 578, 724, 749, 808 |
| BslFI | GGGAC | 3 cut(s) | 412, 479, 790 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 19, 243, 814 |
| BsmAI | GTCTC | 2 cut(s) | 63, 787 |
| BsmFI | GGGAC | 3 cut(s) | 412, 479, 790 |
| BsnI | GGCC | 6 cut(s) | 270, 413, 761, 882, 916, 1005 |
| BsoBI | CYCGRG | 5 cut(s) | 172, 192, 214, 407, 748 |
| Bsp1286I | GDGCHC | 6 cut(s) | 179, 309, 597, 612, 715, 829 |
| Bsp13I | TCCGGA | 1 cut(s) | 577 |
| Bsp143I | GATC | 5 cut(s) | 514, 810, 817, 876, 933 |
| Bsp68I | TCGCGA | 1 cut(s) | 303 |
| BspANI | GGCC | 6 cut(s) | 270, 413, 761, 882, 916, 1005 |
| BspEI | TCCGGA | 1 cut(s) | 577 |
| BspFNI | CGCG | 6 cut(s) | 224, 303, 355, 446, 591, 989 |
| BspLI | GGNNCC | 6 cut(s) | 51, 125, 202, 452, 485, 619 |
| BspPI | GGATC | 3 cut(s) | 818, 825, 884 |
| BspQI | GCTCTTC | 1 cut(s) | 600 |
| BspT107I | GGYRCC | 3 cut(s) | 123, 483, 617 |
| BssECI | CCNNGG | 8 cut(s) | 29, 45, 408, 414, 621, 642, 747, 748 |
| BssMI | GATC | 5 cut(s) | 514, 810, 817, 876, 933 |
| BssNI | GRCGYC | 1 cut(s) | 732 |
| Bst4CI | ACNGT | 2 cut(s) | 360, 841 |
| Bst6I | CTCTTC | 2 cut(s) | 558, 600 |
| BstACI | GRCGYC | 1 cut(s) | 732 |
| BstC8I | GCNNGC | 7 cut(s) | 199, 305, 341, 404, 589, 593, 991 |
| BstDEI | CTNAG | 3 cut(s) | 54, 165, 471 |
| BstF5I | GGATG | 3 cut(s) | 91, 369, 400 |
| BstFNI | CGCG | 6 cut(s) | 224, 303, 355, 446, 591, 989 |
| BstHHI | GCGC | 1 cut(s) | 703 |
| BstKTI | GATC | 5 cut(s) | 517, 813, 820, 879, 936 |
| BstMAI | GTCTC | 2 cut(s) | 63, 787 |
| BstMBI | GATC | 5 cut(s) | 514, 810, 817, 876, 933 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 203, 581, 638, 692, 854, 888, 928, 950, 995 |
| BstSCI | CCNGG | 4 cut(s) | 44, 747, 748, 806 |
| BstSLI | GKGCMC | 2 cut(s) | 179, 715 |
| BstUI | CGCG | 6 cut(s) | 224, 303, 355, 446, 591, 989 |
| BstV1I | GCAGC | 4 cut(s) | 468, 571, 715, 940 |
| BstX2I | RGATCY | 1 cut(s) | 817 |
| BstYI | RGATCY | 1 cut(s) | 817 |
| BsuRI | GGCC | 6 cut(s) | 270, 413, 761, 882, 916, 1005 |
| BtsCI | GGATG | 3 cut(s) | 91, 369, 400 |
| BtuMI | TCGCGA | 1 cut(s) | 303 |
| Cac8I | GCNNGC | 7 cut(s) | 199, 305, 341, 404, 589, 593, 991 |
| CfoI | GCGC | 1 cut(s) | 703 |
| Cfr13I | GGNCC | 5 cut(s) | 50, 269, 360, 759, 915 |
| Cfr9I | CCCGGG | 1 cut(s) | 748 |
| CseI | GACGC | 3 cut(s) | 213, 590, 740 |
| Csp6I | GTAC | 3 cut(s) | 124, 484, 689 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 241, 276 |
| CviAII | CATG | 2 cut(s) | 187, 860 |
| CviQI | GTAC | 3 cut(s) | 124, 484, 689 |
| DdeI | CTNAG | 3 cut(s) | 54, 165, 471 |
| DpnI | GATC | 5 cut(s) | 516, 812, 819, 878, 935 |
| DpnII | GATC | 5 cut(s) | 514, 810, 817, 876, 933 |
| Eam1104I | CTCTTC | 2 cut(s) | 558, 600 |
| EarI | CTCTTC | 2 cut(s) | 558, 600 |
| EciI | GGCGGA | 1 cut(s) | 554 |
| Eco147I | AGGCCT | 1 cut(s) | 1005 |
| Eco24I | GRGCYC | 3 cut(s) | 309, 612, 829 |
| Eco32I | GATATC | 1 cut(s) | 390 |
| Eco47I | GGWCC | 2 cut(s) | 50, 360 |
| Eco88I | CYCGRG | 5 cut(s) | 172, 192, 214, 407, 748 |
| EcoO109I | RGGNCCY | 1 cut(s) | 50 |
| EcoRV | GATATC | 1 cut(s) | 390 |
| EcoT38I | GRGCYC | 3 cut(s) | 309, 612, 829 |
| FaeI | CATG | 2 cut(s) | 190, 863 |
| FaiI | YATR | 7 cut(s) | 188, 243, 501, 509, 545, 779, 861 |
| FaqI | GGGAC | 3 cut(s) | 412, 479, 790 |
| FatI | CATG | 2 cut(s) | 186, 859 |
| FauI | CCCGC | 5 cut(s) | 344, 451, 596, 982, 986 |
| FbaI | TGATCA | 1 cut(s) | 514 |
| FblI | GTMKAC | 2 cut(s) | 17, 564 |
| Fnu4HI | GCNGC | 7 cut(s) | 293, 457, 548, 585, 704, 889, 954 |
| FokI | GGATG | 3 cut(s) | 98, 356, 407 |
| FriOI | GRGCYC | 3 cut(s) | 309, 612, 829 |
| Fsp4HI | GCNGC | 7 cut(s) | 293, 457, 548, 585, 704, 889, 954 |
| FspBI | CTAG | 4 cut(s) | 464, 557, 849, 1009 |
| GlaI | GCGC | 1 cut(s) | 702 |
| GluI | GCNGC | 7 cut(s) | 293, 457, 548, 585, 704, 889, 954 |
| HaeIII | GGCC | 6 cut(s) | 270, 413, 761, 882, 916, 1005 |
| HapII | CCGG | 7 cut(s) | 45, 73, 282, 578, 724, 749, 808 |
| HgaI | GACGC | 3 cut(s) | 213, 590, 740 |
| HhaI | GCGC | 1 cut(s) | 703 |
| Hin1I | GRCGYC | 1 cut(s) | 732 |
| Hin1II | CATG | 2 cut(s) | 190, 863 |
| Hin6I | GCGC | 1 cut(s) | 701 |
| HinP1I | GCGC | 1 cut(s) | 701 |
| HincII | GTYRAC | 3 cut(s) | 18, 67, 669 |
| HindII | GTYRAC | 3 cut(s) | 18, 67, 669 |
| HinfI | GANTC | 6 cut(s) | 23, 76, 140, 489, 743, 803 |
| HpaI | GTTAAC | 1 cut(s) | 67 |
| HpaII | CCGG | 7 cut(s) | 45, 73, 282, 578, 724, 749, 808 |
| HphI | GGTGA | 3 cut(s) | 524, 668, 713 |
| Hpy166II | GTNNAC | 6 cut(s) | 18, 67, 276, 363, 565, 669 |
| Hpy188I | TCNGA | 3 cut(s) | 387, 394, 824 |
| Hpy188III | TCNNGA | 5 cut(s) | 214, 302, 518, 578, 800 |
| Hpy8I | GTNNAC | 6 cut(s) | 18, 67, 276, 363, 565, 669 |
| Hpy99I | CGWCG | 3 cut(s) | 19, 22, 360 |
| HpyAV | CCTTC | 4 cut(s) | 260, 441, 653, 838 |
| HpyCH4III | ACNGT | 2 cut(s) | 360, 841 |
| HpyCH4V | TGCA | 1 cut(s) | 343 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 203, 581, 638, 692, 854, 888, 928, 950, 995 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 165, 471 |
| Hsp92I | GRCGYC | 1 cut(s) | 732 |
| Hsp92II | CATG | 2 cut(s) | 190, 863 |
| HspAI | GCGC | 1 cut(s) | 701 |
| Kpn2I | TCCGGA | 1 cut(s) | 577 |
| KpnI | GGTACC | 2 cut(s) | 127, 487 |
| Ksp22I | TGATCA | 1 cut(s) | 514 |
| KspAI | GTTAAC | 1 cut(s) | 67 |
| Kzo9I | GATC | 5 cut(s) | 514, 810, 817, 876, 933 |
| LguI | GCTCTTC | 1 cut(s) | 600 |
| LmnI | GCTCC | 3 cut(s) | 206, 284, 580 |
| Lsp1109I | GCAGC | 4 cut(s) | 468, 571, 715, 940 |
| LweI | GCATC | 2 cut(s) | 476, 715 |
| MaeI | CTAG | 4 cut(s) | 464, 557, 849, 1009 |
| MalI | GATC | 5 cut(s) | 516, 812, 819, 878, 935 |
| MboI | GATC | 5 cut(s) | 514, 810, 817, 876, 933 |
| MboII | GAAGA | 3 cut(s) | 241, 545, 617 |
| MfeI | CAATTG | 1 cut(s) | 871 |
| MflI | RGATCY | 1 cut(s) | 817 |
| MhlI | GDGCHC | 6 cut(s) | 179, 309, 597, 612, 715, 829 |
| MluCI | AATT | 3 cut(s) | 146, 321, 871 |
| MlyI | GAGTC | 3 cut(s) | 32, 483, 812 |
| MroI | TCCGGA | 1 cut(s) | 577 |
| MseI | TTAA | 1 cut(s) | 66 |
| MslI | CAYNNNNRTG | 1 cut(s) | 374 |
| MspI | CCGG | 7 cut(s) | 45, 73, 282, 578, 724, 749, 808 |
| MspR9I | CCNGG | 4 cut(s) | 46, 749, 750, 808 |
| MunI | CAATTG | 1 cut(s) | 871 |
| MvnI | CGCG | 6 cut(s) | 224, 303, 355, 446, 591, 989 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 203, 581, 638, 692, 854, 888, 928, 950, 995 |
| NciI | CCSGG | 4 cut(s) | 46, 749, 750, 808 |
| NdeII | GATC | 5 cut(s) | 514, 810, 817, 876, 933 |
| NlaIII | CATG | 2 cut(s) | 190, 863 |
| NlaIV | GGNNCC | 6 cut(s) | 51, 125, 202, 452, 485, 619 |
| NmeAIII | GCCGAG | 3 cut(s) | 54, 439, 667 |
| NruI | TCGCGA | 1 cut(s) | 303 |
| PceI | AGGCCT | 1 cut(s) | 1005 |
| PciSI | GCTCTTC | 1 cut(s) | 600 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 26, 588 |
| PfeI | GAWTC | 3 cut(s) | 76, 140, 743 |
| PflFI | GACNNNGTC | 1 cut(s) | 22 |
| PfoI | TCCNGGA | 1 cut(s) | 806 |
| PkrI | GCNGC | 7 cut(s) | 294, 458, 549, 586, 705, 890, 955 |
| PleI | GAGTC | 3 cut(s) | 31, 483, 811 |
| PpsI | GAGTC | 3 cut(s) | 31, 483, 811 |
| PpuMI | RGGWCCY | 1 cut(s) | 50 |
| Psp5II | RGGWCCY | 1 cut(s) | 50 |
| PspN4I | GGNNCC | 6 cut(s) | 51, 125, 202, 452, 485, 619 |
| PspPI | GGNCC | 5 cut(s) | 50, 269, 360, 759, 915 |
| PspPPI | RGGWCCY | 1 cut(s) | 50 |
| PsuI | RGATCY | 1 cut(s) | 817 |
| PsyI | GACNNNGTC | 1 cut(s) | 22 |
| RruI | TCGCGA | 1 cut(s) | 303 |
| RsaI | GTAC | 3 cut(s) | 125, 485, 690 |
| RsaNI | GTAC | 3 cut(s) | 124, 484, 689 |
| RseI | CAYNNNNRTG | 1 cut(s) | 374 |
| SalI | GTCGAC | 1 cut(s) | 16 |
| SapI | GCTCTTC | 1 cut(s) | 600 |
| SaqAI | TTAA | 1 cut(s) | 66 |
| SatI | GCNGC | 7 cut(s) | 293, 457, 548, 585, 704, 889, 954 |
| Sau3AI | GATC | 5 cut(s) | 514, 810, 817, 876, 933 |
| Sau96I | GGNCC | 5 cut(s) | 50, 269, 360, 759, 915 |
| SchI | GAGTC | 3 cut(s) | 32, 483, 812 |
| ScrFI | CCNGG | 4 cut(s) | 46, 749, 750, 808 |
| SduI | GDGCHC | 6 cut(s) | 179, 309, 597, 612, 715, 829 |
| SetI | ASST | 9 cut(s) | 125, 185, 321, 404, 482, 664, 771, 786, 955 |
| SfaNI | GCATC | 2 cut(s) | 476, 715 |
| SgrDI | CGTCGACG | 1 cut(s) | 16 |
| SinI | GGWCC | 2 cut(s) | 50, 360 |
| SmaI | CCCGGG | 1 cut(s) | 750 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 374 |
| SmlI | CTYRAG | 2 cut(s) | 785, 800 |
| SmoI | CTYRAG | 2 cut(s) | 785, 800 |
| Sse9I | AATT | 3 cut(s) | 146, 321, 871 |
| SseBI | AGGCCT | 1 cut(s) | 1005 |
| SspMI | CTAG | 4 cut(s) | 464, 557, 849, 1009 |
| StuI | AGGCCT | 1 cut(s) | 1005 |
| StyD4I | CCNGG | 4 cut(s) | 44, 747, 748, 806 |
| TaaI | ACNGT | 2 cut(s) | 360, 841 |
| TaqI | TCGA | 3 cut(s) | 17, 434, 894 |
| TasI | AATT | 3 cut(s) | 146, 321, 871 |
| TauI | GCSGC | 3 cut(s) | 295, 550, 891 |
| TfiI | GAWTC | 3 cut(s) | 76, 140, 743 |
| Tru1I | TTAA | 1 cut(s) | 66 |
| Tru9I | TTAA | 1 cut(s) | 66 |
| TseI | GCWGC | 4 cut(s) | 456, 584, 703, 953 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 35 |
| TspMI | CCCGGG | 1 cut(s) | 748 |
| Tth111I | GACNNNGTC | 1 cut(s) | 22 |
| VpaK11BI | GGWCC | 2 cut(s) | 50, 360 |
| XmaI | CCCGGG | 1 cut(s) | 748 |
| XmiI | GTMKAC | 2 cut(s) | 17, 564 |
| XspI | CTAG | 4 cut(s) | 464, 557, 849, 1009 |