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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 369 |
| Acc65I | GGTACC | 1 cut(s) | 295 |
| AccB1I | GGYRCC | 1 cut(s) | 295 |
| AccBSI | CCGCTC | 1 cut(s) | 665 |
| AccII | CGCG | 6 cut(s) | 259, 353, 436, 644, 646, 648 |
| AccIII | TCCGGA | 1 cut(s) | 246 |
| AciI | CCGC | 8 cut(s) | 105, 112, 259, 436, 450, 564, 663, 693 |
| AclWI | GGATC | 5 cut(s) | 351, 386, 399, 619, 632 |
| AcoI | YGGCCR | 1 cut(s) | 300 |
| AfaI | GTAC | 4 cut(s) | 297, 503, 542, 575 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 114, 218, 374, 570 |
| AgsI | TTSAA | 3 cut(s) | 83, 101, 411 |
| AluBI | AGCT | 2 cut(s) | 56, 326 |
| AluI | AGCT | 2 cut(s) | 56, 326 |
| Alw21I | GWGCWC | 1 cut(s) | 272 |
| Alw26I | GTCTC | 1 cut(s) | 138 |
| Alw44I | GTGCAC | 1 cut(s) | 268 |
| AlwI | GGATC | 5 cut(s) | 351, 386, 399, 619, 632 |
| Ama87I | CYCGRG | 1 cut(s) | 619 |
| Aor13HI | TCCGGA | 1 cut(s) | 246 |
| AoxI | GGCC | 4 cut(s) | 116, 220, 300, 653 |
| ApaLI | GTGCAC | 1 cut(s) | 268 |
| ApeKI | GCWGC | 1 cut(s) | 56 |
| AsiSI | GCGATCGC | 1 cut(s) | 642 |
| Asp718I | GGTACC | 1 cut(s) | 295 |
| AspLEI | GCGC | 4 cut(s) | 353, 646, 648, 650 |
| AspS9I | GGNCC | 3 cut(s) | 153, 231, 381 |
| AsuC2I | CCSGG | 3 cut(s) | 157, 620, 621 |
| AsuHPI | GGTGA | 1 cut(s) | 488 |
| AvaI | CYCGRG | 1 cut(s) | 619 |
| AvaII | GGWCC | 3 cut(s) | 153, 231, 381 |
| BaeGI | GKGCMC | 1 cut(s) | 272 |
| BamHI | GGATCC | 2 cut(s) | 391, 624 |
| BanI | GGYRCC | 1 cut(s) | 295 |
| BauI | CACGAG | 1 cut(s) | 550 |
| BbsI | GAAGAC | 1 cut(s) | 192 |
| Bbv12I | GWGCWC | 1 cut(s) | 272 |
| BbvI | GCAGC | 1 cut(s) | 43 |
| BccI | CCATC | 3 cut(s) | 220, 311, 600 |
| BceAI | ACGGC | 3 cut(s) | 92, 300, 699 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 72, 103, 137, 700, 734 |
| BclI | TGATCA | 1 cut(s) | 21 |
| BcnI | CCSGG | 3 cut(s) | 157, 620, 621 |
| BcoDI | GTCTC | 1 cut(s) | 138 |
| BfaI | CTAG | 2 cut(s) | 725, 755 |
| BfmI | CTRYAG | 1 cut(s) | 633 |
| BfuAI | ACCTGC | 1 cut(s) | 369 |
| BisI | GCNGC | 4 cut(s) | 57, 437, 663, 693 |
| BlsI | GCNGC | 4 cut(s) | 58, 438, 664, 694 |
| Bme1390I | CCNGG | 3 cut(s) | 157, 620, 621 |
| Bme18I | GGWCC | 3 cut(s) | 153, 231, 381 |
| BmeT110I | CYCGRG | 1 cut(s) | 619 |
| BmgT120I | GGNCC | 3 cut(s) | 153, 231, 381 |
| BmiI | GGNNCC | 5 cut(s) | 6, 73, 297, 393, 626 |
| BmrFI | CCNGG | 3 cut(s) | 157, 620, 621 |
| BmsI | GCATC | 1 cut(s) | 545 |
| BpiI | GAAGAC | 1 cut(s) | 192 |
| BpuEI | CTTGAG | 1 cut(s) | 154 |
| BpuMI | CCSGG | 3 cut(s) | 157, 620, 621 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 750 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 591 |
| BsaI | GGTCTC | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 4 cut(s) | 316, 619, 620, 696 |
| BsaWI | WCCGGW | 2 cut(s) | 228, 246 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 485, 515 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 66, 67, 114, 218, 374, 570 |
| Bse118I | RCCGGY | 3 cut(s) | 218, 298, 740 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 591 |
| BseAI | TCCGGA | 1 cut(s) | 246 |
| BseCI | ATCGAT | 2 cut(s) | 27, 750 |
| BseDI | CCNNGG | 4 cut(s) | 316, 619, 620, 696 |
| BseGI | GGATG | 5 cut(s) | 178, 303, 351, 442, 506 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 591 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 114, 218, 374, 570 |
| BsePI | GCGCGC | 2 cut(s) | 644, 646 |
| BseSI | GKGCMC | 1 cut(s) | 272 |
| BseXI | GCAGC | 1 cut(s) | 43 |
| Bsh1236I | CGCG | 6 cut(s) | 259, 353, 436, 644, 646, 648 |
| Bsh1285I | CGRYCG | 3 cut(s) | 490, 642, 750 |
| BshFI | GGCC | 4 cut(s) | 118, 222, 302, 655 |
| BshNI | GGYRCC | 1 cut(s) | 295 |
| BshVI | ATCGAT | 2 cut(s) | 27, 750 |
| BsiEI | CGRYCG | 3 cut(s) | 490, 642, 750 |
| BsiHKAI | GWGCWC | 1 cut(s) | 272 |
| BsiHKCI | CYCGRG | 1 cut(s) | 619 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 114, 218, 374, 570 |
| BsmAI | GTCTC | 1 cut(s) | 138 |
| BsnI | GGCC | 4 cut(s) | 118, 222, 302, 655 |
| Bso31I | GGTCTC | 1 cut(s) | 138 |
| BsoBI | CYCGRG | 1 cut(s) | 619 |
| Bsp1286I | GDGCHC | 1 cut(s) | 272 |
| Bsp13I | TCCGGA | 1 cut(s) | 246 |
| Bsp143I | GATC | 9 cut(s) | 21, 28, 356, 391, 624, 639, 668, 747, 751 |
| BspACI | CCGC | 8 cut(s) | 105, 112, 259, 436, 450, 564, 663, 693 |
| BspANI | GGCC | 4 cut(s) | 118, 222, 302, 655 |
| BspDI | ATCGAT | 2 cut(s) | 27, 750 |
| BspEI | TCCGGA | 1 cut(s) | 246 |
| BspFNI | CGCG | 6 cut(s) | 259, 353, 436, 644, 646, 648 |
| BspLI | GGNNCC | 5 cut(s) | 6, 73, 297, 393, 626 |
| BspMI | ACCTGC | 1 cut(s) | 369 |
| BspPI | GGATC | 5 cut(s) | 351, 386, 399, 619, 632 |
| BspT107I | GGYRCC | 1 cut(s) | 295 |
| BspTNI | GGTCTC | 1 cut(s) | 138 |
| BsrBI | CCGCTC | 1 cut(s) | 665 |
| BsrFI | RCCGGY | 3 cut(s) | 218, 298, 740 |
| BssAI | RCCGGY | 3 cut(s) | 218, 298, 740 |
| BssECI | CCNNGG | 4 cut(s) | 316, 619, 620, 696 |
| BssHII | GCGCGC | 2 cut(s) | 644, 646 |
| BssMI | GATC | 9 cut(s) | 21, 28, 356, 391, 624, 639, 668, 747, 751 |
| BssSI | CACGAG | 1 cut(s) | 550 |
| Bst2BI | CACGAG | 1 cut(s) | 550 |
| Bst4CI | ACNGT | 1 cut(s) | 92 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 555 |
| BstC8I | GCNNGC | 6 cut(s) | 116, 220, 365, 646, 648, 738 |
| BstDSI | CCRYGG | 1 cut(s) | 316 |
| BstF5I | GGATG | 5 cut(s) | 178, 303, 351, 442, 506 |
| BstFNI | CGCG | 6 cut(s) | 259, 353, 436, 644, 646, 648 |
| BstHHI | GCGC | 4 cut(s) | 353, 646, 648, 650 |
| BstKTI | GATC | 9 cut(s) | 24, 31, 359, 394, 627, 642, 671, 750, 754 |
| BstMAI | GTCTC | 1 cut(s) | 138 |
| BstMBI | GATC | 9 cut(s) | 21, 28, 356, 391, 624, 639, 668, 747, 751 |
| BstMCI | CGRYCG | 3 cut(s) | 490, 642, 750 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 458, 555, 652 |
| BstSCI | CCNGG | 3 cut(s) | 155, 618, 619 |
| BstSFI | CTRYAG | 1 cut(s) | 633 |
| BstSLI | GKGCMC | 1 cut(s) | 272 |
| BstUI | CGCG | 6 cut(s) | 259, 353, 436, 644, 646, 648 |
| BstV1I | GCAGC | 1 cut(s) | 43 |
| BstV2I | GAAGAC | 1 cut(s) | 192 |
| BstX2I | RGATCY | 3 cut(s) | 356, 391, 624 |
| BstYI | RGATCY | 3 cut(s) | 356, 391, 624 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 750 |
| BsuRI | GGCC | 4 cut(s) | 118, 222, 302, 655 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 750 |
| BtgI | CCRYGG | 1 cut(s) | 316 |
| BtgZI | GCGATG | 1 cut(s) | 296 |
| BtsCI | GGATG | 5 cut(s) | 178, 303, 351, 442, 506 |
| BveI | ACCTGC | 1 cut(s) | 369 |
| Cac8I | GCNNGC | 6 cut(s) | 116, 220, 365, 646, 648, 738 |
| CfoI | GCGC | 4 cut(s) | 353, 646, 648, 650 |
| Cfr10I | RCCGGY | 3 cut(s) | 218, 298, 740 |
| Cfr13I | GGNCC | 3 cut(s) | 153, 231, 381 |
| Cfr9I | CCCGGG | 1 cut(s) | 619 |
| ClaI | ATCGAT | 2 cut(s) | 27, 750 |
| CpoI | CGGWCCG | 1 cut(s) | 153 |
| CseI | GACGC | 2 cut(s) | 197, 751 |
| Csp6I | GTAC | 4 cut(s) | 296, 502, 541, 574 |
| CspI | CGGWCCG | 1 cut(s) | 153 |
| CviAII | CATG | 1 cut(s) | 374 |
| CviQI | GTAC | 4 cut(s) | 296, 502, 541, 574 |
| DpnI | GATC | 9 cut(s) | 23, 30, 358, 393, 626, 641, 670, 749, 753 |
| DpnII | GATC | 9 cut(s) | 21, 28, 356, 391, 624, 639, 668, 747, 751 |
| EaeI | YGGCCR | 1 cut(s) | 300 |
| Eco147I | AGGCCT | 1 cut(s) | 118 |
| Eco31I | GGTCTC | 1 cut(s) | 138 |
| Eco47I | GGWCC | 3 cut(s) | 153, 231, 381 |
| Eco88I | CYCGRG | 1 cut(s) | 619 |
| EcoO109I | RGGNCCY | 1 cut(s) | 381 |
| FaeI | CATG | 1 cut(s) | 377 |
| FaiI | YATR | 6 cut(s) | 148, 375, 535, 635, 719, 778 |
| FatI | CATG | 1 cut(s) | 373 |
| FbaI | TGATCA | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 4 cut(s) | 57, 437, 663, 693 |
| FokI | GGATG | 5 cut(s) | 165, 290, 358, 429, 493 |
| Fsp4HI | GCNGC | 4 cut(s) | 57, 437, 663, 693 |
| FspBI | CTAG | 2 cut(s) | 725, 755 |
| GlaI | GCGC | 4 cut(s) | 352, 645, 647, 649 |
| GluI | GCNGC | 4 cut(s) | 57, 437, 663, 693 |
| HaeIII | GGCC | 4 cut(s) | 118, 222, 302, 655 |
| HgaI | GACGC | 2 cut(s) | 197, 751 |
| HhaI | GCGC | 4 cut(s) | 353, 646, 648, 650 |
| Hin1II | CATG | 1 cut(s) | 377 |
| Hin6I | GCGC | 4 cut(s) | 351, 644, 646, 648 |
| HinP1I | GCGC | 4 cut(s) | 351, 644, 646, 648 |
| HindIII | AAGCTT | 1 cut(s) | 324 |
| HinfI | GANTC | 4 cut(s) | 243, 407, 587, 687 |
| HphI | GGTGA | 1 cut(s) | 488 |
| Hpy166II | GTNNAC | 2 cut(s) | 270, 504 |
| Hpy188I | TCNGA | 3 cut(s) | 238, 523, 680 |
| Hpy188III | TCNNGA | 7 cut(s) | 32, 171, 182, 247, 339, 404, 491 |
| Hpy8I | GTNNAC | 2 cut(s) | 270, 504 |
| Hpy99I | CGWCG | 3 cut(s) | 96, 436, 467 |
| HpyAV | CCTTC | 4 cut(s) | 107, 233, 336, 554 |
| HpyCH4III | ACNGT | 1 cut(s) | 92 |
| HpyCH4V | TGCA | 1 cut(s) | 270 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 458, 555, 652 |
| Hsp92II | CATG | 1 cut(s) | 377 |
| HspAI | GCGC | 4 cut(s) | 351, 644, 646, 648 |
| Kpn2I | TCCGGA | 1 cut(s) | 246 |
| KpnI | GGTACC | 1 cut(s) | 299 |
| KroI | GCCGGC | 1 cut(s) | 218 |
| KroNI | GCCGGC | 1 cut(s) | 220 |
| Ksp22I | TGATCA | 1 cut(s) | 21 |
| Kzo9I | GATC | 9 cut(s) | 21, 28, 356, 391, 624, 639, 668, 747, 751 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 1 cut(s) | 43 |
| LweI | GCATC | 1 cut(s) | 545 |
| MaeI | CTAG | 2 cut(s) | 725, 755 |
| MaeIII | GTNAC | 1 cut(s) | 727 |
| MalI | GATC | 9 cut(s) | 23, 30, 358, 393, 626, 641, 670, 749, 753 |
| MauBI | CGCGCGCG | 1 cut(s) | 644 |
| MbiI | CCGCTC | 1 cut(s) | 665 |
| MboI | GATC | 9 cut(s) | 21, 28, 356, 391, 624, 639, 668, 747, 751 |
| MboII | GAAGA | 4 cut(s) | 28, 197, 419, 596 |
| MflI | RGATCY | 3 cut(s) | 356, 391, 624 |
| MhlI | GDGCHC | 1 cut(s) | 272 |
| MluCI | AATT | 2 cut(s) | 398, 567 |
| MlyI | GAGTC | 2 cut(s) | 237, 681 |
| MnlI | CCTC | 7 cut(s) | 31, 129, 178, 244, 405, 487, 691 |
| MroI | TCCGGA | 1 cut(s) | 246 |
| MroNI | GCCGGC | 1 cut(s) | 218 |
| MslI | CAYNNNNRTG | 1 cut(s) | 315 |
| MspR9I | CCNGG | 3 cut(s) | 157, 620, 621 |
| MvnI | CGCG | 6 cut(s) | 259, 353, 436, 644, 646, 648 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 458, 555, 652 |
| NaeI | GCCGGC | 1 cut(s) | 220 |
| NciI | CCSGG | 3 cut(s) | 157, 620, 621 |
| NdeII | GATC | 9 cut(s) | 21, 28, 356, 391, 624, 639, 668, 747, 751 |
| NgoMIV | GCCGGC | 1 cut(s) | 218 |
| NlaIII | CATG | 1 cut(s) | 377 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 73, 297, 393, 626 |
| NmeAIII | GCCGAG | 1 cut(s) | 721 |
| NmuCI | GTSAC | 1 cut(s) | 727 |
| PauI | GCGCGC | 2 cut(s) | 644, 646 |
| PceI | AGGCCT | 1 cut(s) | 118 |
| PdiI | GCCGGC | 1 cut(s) | 220 |
| PfeI | GAWTC | 2 cut(s) | 407, 587 |
| PflFI | GACNNNGTC | 1 cut(s) | 157 |
| PkrI | GCNGC | 4 cut(s) | 58, 438, 664, 694 |
| Ple19I | CGATCG | 2 cut(s) | 642, 750 |
| PleI | GAGTC | 2 cut(s) | 237, 681 |
| PpsI | GAGTC | 2 cut(s) | 237, 681 |
| PpuMI | RGGWCCY | 1 cut(s) | 381 |
| Psp5II | RGGWCCY | 1 cut(s) | 381 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 73, 297, 393, 626 |
| PspPI | GGNCC | 3 cut(s) | 153, 231, 381 |
| PspPPI | RGGWCCY | 1 cut(s) | 381 |
| PsuI | RGATCY | 3 cut(s) | 356, 391, 624 |
| PsyI | GACNNNGTC | 1 cut(s) | 157 |
| PteI | GCGCGC | 2 cut(s) | 644, 646 |
| PvuI | CGATCG | 2 cut(s) | 642, 750 |
| RgaI | GCGATCGC | 1 cut(s) | 642 |
| RsaI | GTAC | 4 cut(s) | 297, 503, 542, 575 |
| RsaNI | GTAC | 4 cut(s) | 296, 502, 541, 574 |
| RseI | CAYNNNNRTG | 1 cut(s) | 315 |
| Rsr2I | CGGWCCG | 1 cut(s) | 153 |
| RsrII | CGGWCCG | 1 cut(s) | 153 |
| SatI | GCNGC | 4 cut(s) | 57, 437, 663, 693 |
| Sau3AI | GATC | 9 cut(s) | 21, 28, 356, 391, 624, 639, 668, 747, 751 |
| Sau96I | GGNCC | 3 cut(s) | 153, 231, 381 |
| SchI | GAGTC | 2 cut(s) | 237, 681 |
| ScrFI | CCNGG | 3 cut(s) | 157, 620, 621 |
| SduI | GDGCHC | 1 cut(s) | 272 |
| SetI | ASST | 6 cut(s) | 58, 170, 328, 383, 503, 546 |
| SfaAI | GCGATCGC | 1 cut(s) | 642 |
| SfaNI | GCATC | 1 cut(s) | 545 |
| SfcI | CTRYAG | 1 cut(s) | 633 |
| SgfI | GCGATCGC | 1 cut(s) | 642 |
| SinI | GGWCC | 3 cut(s) | 153, 231, 381 |
| SmaI | CCCGGG | 1 cut(s) | 621 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 315 |
| SmlI | CTYRAG | 1 cut(s) | 169 |
| SmoI | CTYRAG | 1 cut(s) | 169 |
| Sse9I | AATT | 2 cut(s) | 398, 567 |
| SseBI | AGGCCT | 1 cut(s) | 118 |
| SsiI | CCGC | 8 cut(s) | 105, 112, 259, 436, 450, 564, 663, 693 |
| SspMI | CTAG | 2 cut(s) | 725, 755 |
| StuI | AGGCCT | 1 cut(s) | 118 |
| StyD4I | CCNGG | 3 cut(s) | 155, 618, 619 |
| TaaI | ACNGT | 1 cut(s) | 92 |
| TaqI | TCGA | 7 cut(s) | 27, 340, 602, 667, 685, 746, 750 |
| TaqII | GACCGA | 2 cut(s) | 120, 476 |
| TasI | AATT | 2 cut(s) | 398, 567 |
| TauI | GCSGC | 3 cut(s) | 439, 665, 695 |
| TfiI | GAWTC | 2 cut(s) | 407, 587 |
| TseFI | GTSAC | 1 cut(s) | 727 |
| TseI | GCWGC | 1 cut(s) | 56 |
| Tsp45I | GTSAC | 1 cut(s) | 727 |
| TspDTI | ATGAA | 2 cut(s) | 167, 522 |
| TspGWI | ACGGA | 2 cut(s) | 420, 528 |
| TspMI | CCCGGG | 1 cut(s) | 619 |
| Tth111I | GACNNNGTC | 1 cut(s) | 157 |
| VneI | GTGCAC | 1 cut(s) | 268 |
| VpaK11BI | GGWCC | 3 cut(s) | 153, 231, 381 |
| XmaI | CCCGGG | 1 cut(s) | 619 |
| XspI | CTAG | 2 cut(s) | 725, 755 |