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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 71 |
| AccBSI | CCGCTC | 1 cut(s) | 340 |
| AccII | CGCG | 1 cut(s) | 321 |
| AciI | CCGC | 6 cut(s) | 167, 261, 276, 321, 338, 369 |
| AcyI | GRCGYC | 1 cut(s) | 189 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 323 |
| AgsI | TTSAA | 1 cut(s) | 310 |
| AjnI | CCWGG | 1 cut(s) | 247 |
| Alw26I | GTCTC | 1 cut(s) | 246 |
| AoxI | GGCC | 3 cut(s) | 157, 221, 439 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 2 cut(s) | 56, 344 |
| AspS9I | GGNCC | 3 cut(s) | 157, 158, 222 |
| AsuC2I | CCSGG | 2 cut(s) | 151, 182 |
| AsuHPI | GGTGA | 3 cut(s) | 104, 277, 427 |
| BaeGI | GKGCMC | 2 cut(s) | 74, 161 |
| BanI | GGYRCC | 1 cut(s) | 71 |
| BanII | GRGCYC | 1 cut(s) | 161 |
| BbsI | GAAGAC | 1 cut(s) | 200 |
| BbvI | GCAGC | 2 cut(s) | 43, 331 |
| BccI | CCATC | 4 cut(s) | 150, 200, 440, 455 |
| BceAI | ACGGC | 1 cut(s) | 69 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 61, 72, 95 |
| BciT130I | CCWGG | 1 cut(s) | 249 |
| BcnI | CCSGG | 2 cut(s) | 151, 182 |
| BcoDI | GTCTC | 1 cut(s) | 246 |
| BfaI | CTAG | 1 cut(s) | 98 |
| BisI | GCNGC | 4 cut(s) | 57, 276, 338, 345 |
| BlsI | GCNGC | 4 cut(s) | 58, 277, 339, 346 |
| Bme1390I | CCNGG | 3 cut(s) | 151, 182, 249 |
| BmgT120I | GGNCC | 3 cut(s) | 157, 158, 222 |
| BmiI | GGNNCC | 3 cut(s) | 6, 73, 159 |
| BmrFI | CCNGG | 3 cut(s) | 151, 182, 249 |
| BmsI | GCATC | 3 cut(s) | 87, 291, 417 |
| BpiI | GAAGAC | 1 cut(s) | 200 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 397, 429 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| BpuMI | CCSGG | 2 cut(s) | 151, 182 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaHI | GRCGYC | 1 cut(s) | 189 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 323 |
| Bse118I | RCCGGY | 2 cut(s) | 219, 437 |
| Bse1I | ACTGG | 1 cut(s) | 230 |
| BseBI | CCWGG | 1 cut(s) | 249 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseGI | GGATG | 1 cut(s) | 423 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BseNI | ACTGG | 1 cut(s) | 230 |
| BseSI | GKGCMC | 2 cut(s) | 74, 161 |
| BseXI | GCAGC | 2 cut(s) | 43, 331 |
| BseYI | CCCAGC | 1 cut(s) | 160 |
| Bsh1236I | CGCG | 1 cut(s) | 321 |
| Bsh1285I | CGRYCG | 1 cut(s) | 265 |
| BshFI | GGCC | 3 cut(s) | 159, 223, 441 |
| BshNI | GGYRCC | 1 cut(s) | 71 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 1 cut(s) | 265 |
| BsiSI | CCGG | 4 cut(s) | 150, 182, 220, 438 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 323 |
| BsmAI | GTCTC | 1 cut(s) | 246 |
| BsmI | GAATGC | 2 cut(s) | 90, 277 |
| BsnI | GGCC | 3 cut(s) | 159, 223, 441 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 2 cut(s) | 74, 161 |
| Bsp143I | GATC | 1 cut(s) | 28 |
| BspACI | CCGC | 6 cut(s) | 167, 261, 276, 321, 338, 369 |
| BspANI | GGCC | 3 cut(s) | 159, 223, 441 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 1 cut(s) | 321 |
| BspLI | GGNNCC | 3 cut(s) | 6, 73, 159 |
| BspT107I | GGYRCC | 1 cut(s) | 71 |
| BsrBI | CCGCTC | 1 cut(s) | 340 |
| BsrFI | RCCGGY | 2 cut(s) | 219, 437 |
| BsrI | ACTGG | 1 cut(s) | 230 |
| BssAI | RCCGGY | 2 cut(s) | 219, 437 |
| BssMI | GATC | 1 cut(s) | 28 |
| BssNI | GRCGYC | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 1 cut(s) | 249 |
| BstACI | GRCGYC | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 4 cut(s) | 221, 280, 342, 443 |
| BstDEI | CTNAG | 1 cut(s) | 12 |
| BstF5I | GGATG | 1 cut(s) | 423 |
| BstFNI | CGCG | 1 cut(s) | 321 |
| BstKTI | GATC | 1 cut(s) | 31 |
| BstMAI | GTCTC | 1 cut(s) | 246 |
| BstMBI | GATC | 1 cut(s) | 28 |
| BstMCI | CGRYCG | 1 cut(s) | 265 |
| BstNI | CCWGG | 1 cut(s) | 249 |
| BstSCI | CCNGG | 3 cut(s) | 149, 180, 247 |
| BstSLI | GKGCMC | 2 cut(s) | 74, 161 |
| BstUI | CGCG | 1 cut(s) | 321 |
| BstV1I | GCAGC | 2 cut(s) | 43, 331 |
| BstV2I | GAAGAC | 1 cut(s) | 200 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 3 cut(s) | 159, 223, 441 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtsCI | GGATG | 1 cut(s) | 423 |
| Cac8I | GCNNGC | 4 cut(s) | 221, 280, 342, 443 |
| Cfr10I | RCCGGY | 2 cut(s) | 219, 437 |
| Cfr13I | GGNCC | 3 cut(s) | 157, 158, 222 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 197 |
| CviAII | CATG | 1 cut(s) | 469 |
| CviJI | RGCY | 5 cut(s) | 5, 56, 159, 223, 441 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 56, 159, 223, 441 |
| DdeI | CTNAG | 1 cut(s) | 12 |
| DpnI | GATC | 1 cut(s) | 30 |
| DpnII | GATC | 1 cut(s) | 28 |
| Eco24I | GRGCYC | 1 cut(s) | 161 |
| EcoRII | CCWGG | 1 cut(s) | 247 |
| EcoT38I | GRGCYC | 1 cut(s) | 161 |
| FaeI | CATG | 1 cut(s) | 472 |
| FaiI | YATR | 5 cut(s) | 202, 204, 304, 464, 470 |
| FatI | CATG | 1 cut(s) | 468 |
| Fnu4HI | GCNGC | 4 cut(s) | 57, 276, 338, 345 |
| FokI | GGATG | 1 cut(s) | 410 |
| FriOI | GRGCYC | 1 cut(s) | 161 |
| Fsp4HI | GCNGC | 4 cut(s) | 57, 276, 338, 345 |
| FspBI | CTAG | 1 cut(s) | 98 |
| GluI | GCNGC | 4 cut(s) | 57, 276, 338, 345 |
| GsaI | CCCAGC | 1 cut(s) | 164 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeIII | GGCC | 3 cut(s) | 159, 223, 441 |
| HapII | CCGG | 4 cut(s) | 150, 182, 220, 438 |
| HgaI | GACGC | 1 cut(s) | 197 |
| Hin1I | GRCGYC | 1 cut(s) | 189 |
| Hin1II | CATG | 1 cut(s) | 472 |
| HincII | GTYRAC | 1 cut(s) | 489 |
| HindII | GTYRAC | 1 cut(s) | 489 |
| HinfI | GANTC | 2 cut(s) | 244, 481 |
| HpaII | CCGG | 4 cut(s) | 150, 182, 220, 438 |
| HphI | GGTGA | 3 cut(s) | 104, 277, 427 |
| Hpy166II | GTNNAC | 1 cut(s) | 489 |
| Hpy188I | TCNGA | 3 cut(s) | 63, 139, 239 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 98, 361 |
| Hpy8I | GTNNAC | 1 cut(s) | 489 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 1 cut(s) | 234 |
| HpyCH4V | TGCA | 1 cut(s) | 468 |
| HpyF3I | CTNAG | 1 cut(s) | 12 |
| Hsp92I | GRCGYC | 1 cut(s) | 189 |
| Hsp92II | CATG | 1 cut(s) | 472 |
| KroI | GCCGGC | 1 cut(s) | 219 |
| KroNI | GCCGGC | 1 cut(s) | 221 |
| Kzo9I | GATC | 1 cut(s) | 28 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 331 |
| LweI | GCATC | 3 cut(s) | 87, 291, 417 |
| MaeI | CTAG | 1 cut(s) | 98 |
| MalI | GATC | 1 cut(s) | 30 |
| MbiI | CCGCTC | 1 cut(s) | 340 |
| MboI | GATC | 1 cut(s) | 28 |
| MboII | GAAGA | 4 cut(s) | 47, 50, 200, 305 |
| MhlI | GDGCHC | 2 cut(s) | 74, 161 |
| MluCI | AATT | 2 cut(s) | 41, 475 |
| MlyI | GAGTC | 2 cut(s) | 238, 475 |
| MmeI | TCCRAC | 1 cut(s) | 162 |
| MnlI | CCTC | 5 cut(s) | 245, 327, 362, 437, 445 |
| MroNI | GCCGGC | 1 cut(s) | 219 |
| MseI | TTAA | 1 cut(s) | 44 |
| MspI | CCGG | 4 cut(s) | 150, 182, 220, 438 |
| MspR9I | CCNGG | 3 cut(s) | 151, 182, 249 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 277 |
| MvaI | CCWGG | 1 cut(s) | 249 |
| MvnI | CGCG | 1 cut(s) | 321 |
| NaeI | GCCGGC | 1 cut(s) | 221 |
| NciI | CCSGG | 2 cut(s) | 151, 182 |
| NdeII | GATC | 1 cut(s) | 28 |
| NgoMIV | GCCGGC | 1 cut(s) | 219 |
| NlaIII | CATG | 1 cut(s) | 472 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 73, 159 |
| PctI | GAATGC | 2 cut(s) | 90, 277 |
| PdiI | GCCGGC | 1 cut(s) | 221 |
| PflFI | GACNNNGTC | 1 cut(s) | 484 |
| PfoI | TCCNGGA | 2 cut(s) | 180, 247 |
| PkrI | GCNGC | 4 cut(s) | 58, 277, 339, 346 |
| PleI | GAGTC | 2 cut(s) | 238, 475 |
| PpsI | GAGTC | 2 cut(s) | 238, 475 |
| Psp6I | CCWGG | 1 cut(s) | 247 |
| PspFI | CCCAGC | 1 cut(s) | 160 |
| PspGI | CCWGG | 1 cut(s) | 247 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 73, 159 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 3 cut(s) | 157, 158, 222 |
| PsyI | GACNNNGTC | 1 cut(s) | 484 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 4 cut(s) | 57, 276, 338, 345 |
| Sau3AI | GATC | 1 cut(s) | 28 |
| Sau96I | GGNCC | 3 cut(s) | 157, 158, 222 |
| SchI | GAGTC | 2 cut(s) | 238, 475 |
| ScrFI | CCNGG | 3 cut(s) | 151, 182, 249 |
| SduI | GDGCHC | 2 cut(s) | 74, 161 |
| SetI | ASST | 1 cut(s) | 462 |
| SfaNI | GCATC | 3 cut(s) | 87, 291, 417 |
| Sse9I | AATT | 2 cut(s) | 41, 475 |
| SsiI | CCGC | 6 cut(s) | 167, 261, 276, 321, 338, 369 |
| SspMI | CTAG | 1 cut(s) | 98 |
| StyD4I | CCNGG | 3 cut(s) | 149, 180, 247 |
| TaqI | TCGA | 2 cut(s) | 27, 450 |
| TasI | AATT | 2 cut(s) | 41, 475 |
| TauI | GCSGC | 2 cut(s) | 278, 340 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TseI | GCWGC | 2 cut(s) | 56, 344 |
| Tth111I | GACNNNGTC | 1 cut(s) | 484 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XspI | CTAG | 1 cut(s) | 98 |