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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 497 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 510 |
| AccBSI | CCGCTC | 2 cut(s) | 445, 528 |
| AccI | GTMKAC | 1 cut(s) | 33 |
| AccII | CGCG | 4 cut(s) | 83, 85, 552, 681 |
| AccIII | TCCGGA | 1 cut(s) | 269 |
| AciI | CCGC | 9 cut(s) | 254, 280, 443, 476, 526, 550, 662, 694, 715 |
| AclWI | GGATC | 2 cut(s) | 160, 173 |
| AcoI | YGGCCR | 4 cut(s) | 251, 431, 512, 535 |
| AcsI | RAATTY | 2 cut(s) | 321, 399 |
| AdeI | CACNNNGTG | 1 cut(s) | 510 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 54, 105, 122, 232, 507, 510 |
| AgsI | TTSAA | 2 cut(s) | 157, 420 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 588, 620 |
| AluBI | AGCT | 1 cut(s) | 685 |
| AluI | AGCT | 1 cut(s) | 685 |
| Alw21I | GWGCWC | 2 cut(s) | 687, 693 |
| Alw26I | GTCTC | 1 cut(s) | 360 |
| AlwI | GGATC | 2 cut(s) | 160, 173 |
| Ama87I | CYCGRG | 1 cut(s) | 686 |
| Aor13HI | TCCGGA | 1 cut(s) | 269 |
| AoxI | GGCC | 6 cut(s) | 113, 251, 431, 512, 535, 645 |
| ApoI | RAATTY | 2 cut(s) | 321, 399 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 467 |
| AspLEI | GCGC | 2 cut(s) | 83, 85 |
| AspS9I | GGNCC | 2 cut(s) | 45, 646 |
| AsuC2I | CCSGG | 3 cut(s) | 62, 227, 495 |
| AsuHPI | GGTGA | 5 cut(s) | 186, 236, 329, 472, 676 |
| AvaI | CYCGRG | 1 cut(s) | 686 |
| AvaII | GGWCC | 1 cut(s) | 45 |
| BalI | TGGCCA | 2 cut(s) | 433, 514 |
| BamHI | GGATCC | 1 cut(s) | 165 |
| BanI | GGYRCC | 1 cut(s) | 497 |
| BanII | GRGCYC | 2 cut(s) | 60, 687 |
| BbsI | GAAGAC | 1 cut(s) | 597 |
| Bbv12I | GWGCWC | 2 cut(s) | 687, 693 |
| BccI | CCATC | 4 cut(s) | 226, 348, 417, 657 |
| BceAI | ACGGC | 2 cut(s) | 378, 550 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 271, 305, 659, 693 |
| BcnI | CCSGG | 3 cut(s) | 62, 227, 495 |
| BcoDI | GTCTC | 1 cut(s) | 360 |
| BfaI | CTAG | 4 cut(s) | 141, 173, 327, 721 |
| BisI | GCNGC | 3 cut(s) | 254, 280, 550 |
| BlsI | GCNGC | 3 cut(s) | 255, 281, 551 |
| Bme1390I | CCNGG | 3 cut(s) | 62, 227, 495 |
| Bme18I | GGWCC | 1 cut(s) | 45 |
| BmeT110I | CYCGRG | 1 cut(s) | 686 |
| BmgT120I | GGNCC | 2 cut(s) | 45, 646 |
| BmiI | GGNNCC | 3 cut(s) | 59, 167, 499 |
| BmrFI | CCNGG | 3 cut(s) | 62, 227, 495 |
| BmrI | ACTGGG | 1 cut(s) | 86 |
| BmuI | ACTGGG | 1 cut(s) | 86 |
| BpiI | GAAGAC | 1 cut(s) | 597 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 119, 151 |
| BpuMI | CCSGG | 3 cut(s) | 62, 227, 495 |
| BsaI | GGTCTC | 1 cut(s) | 360 |
| BsaWI | WCCGGW | 3 cut(s) | 42, 269, 297 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 54, 105, 122, 232, 507, 510 |
| Bse1I | ACTGG | 1 cut(s) | 81 |
| Bse3DI | GCAATG | 1 cut(s) | 492 |
| BseAI | TCCGGA | 1 cut(s) | 269 |
| BseGI | GGATG | 1 cut(s) | 649 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 54, 105, 122, 232, 507, 510 |
| BseMI | GCAATG | 1 cut(s) | 492 |
| BseNI | ACTGG | 1 cut(s) | 81 |
| BsePI | GCGCGC | 1 cut(s) | 81 |
| BseRI | GAGGAG | 2 cut(s) | 143, 569 |
| Bsh1236I | CGCG | 4 cut(s) | 83, 85, 552, 681 |
| Bsh1285I | CGRYCG | 1 cut(s) | 494 |
| BshFI | GGCC | 6 cut(s) | 115, 253, 433, 514, 537, 647 |
| BshNI | GGYRCC | 1 cut(s) | 497 |
| BsiEI | CGRYCG | 1 cut(s) | 494 |
| BsiHKAI | GWGCWC | 2 cut(s) | 687, 693 |
| BsiHKCI | CYCGRG | 1 cut(s) | 686 |
| BsiSI | CCGG | 8 cut(s) | 43, 62, 169, 227, 270, 298, 494, 697 |
| BslFI | GGGAC | 1 cut(s) | 361 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 54, 105, 122, 232, 507, 510 |
| BsmAI | GTCTC | 1 cut(s) | 360 |
| BsmFI | GGGAC | 1 cut(s) | 361 |
| BsnI | GGCC | 6 cut(s) | 115, 253, 433, 514, 537, 647 |
| Bso31I | GGTCTC | 1 cut(s) | 360 |
| BsoBI | CYCGRG | 1 cut(s) | 686 |
| Bsp1286I | GDGCHC | 3 cut(s) | 60, 687, 693 |
| Bsp13I | TCCGGA | 1 cut(s) | 269 |
| Bsp143I | GATC | 2 cut(s) | 165, 207 |
| Bsp68I | TCGCGA | 1 cut(s) | 681 |
| BspACI | CCGC | 9 cut(s) | 254, 280, 443, 476, 526, 550, 662, 694, 715 |
| BspANI | GGCC | 6 cut(s) | 115, 253, 433, 514, 537, 647 |
| BspEI | TCCGGA | 1 cut(s) | 269 |
| BspFNI | CGCG | 4 cut(s) | 83, 85, 552, 681 |
| BspLI | GGNNCC | 3 cut(s) | 59, 167, 499 |
| BspPI | GGATC | 2 cut(s) | 160, 173 |
| BspT107I | GGYRCC | 1 cut(s) | 497 |
| BspTNI | GGTCTC | 1 cut(s) | 360 |
| BsrBI | CCGCTC | 2 cut(s) | 445, 528 |
| BsrDI | GCAATG | 1 cut(s) | 492 |
| BsrI | ACTGG | 1 cut(s) | 81 |
| BssHII | GCGCGC | 1 cut(s) | 81 |
| BssMI | GATC | 2 cut(s) | 165, 207 |
| Bst4CI | ACNGT | 2 cut(s) | 241, 520 |
| Bst6I | CTCTTC | 3 cut(s) | 410, 473, 681 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 683 |
| BstF5I | GGATG | 1 cut(s) | 649 |
| BstFNI | CGCG | 4 cut(s) | 83, 85, 552, 681 |
| BstHHI | GCGC | 2 cut(s) | 83, 85 |
| BstKTI | GATC | 2 cut(s) | 168, 210 |
| BstMAI | GTCTC | 1 cut(s) | 360 |
| BstMBI | GATC | 2 cut(s) | 165, 207 |
| BstMCI | CGRYCG | 1 cut(s) | 494 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 80, 313, 482, 534 |
| BstSCI | CCNGG | 3 cut(s) | 60, 225, 493 |
| BstUI | CGCG | 4 cut(s) | 83, 85, 552, 681 |
| BstV2I | GAAGAC | 1 cut(s) | 597 |
| BstX2I | RGATCY | 1 cut(s) | 165 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 637 |
| BstYI | RGATCY | 1 cut(s) | 165 |
| BsuRI | GGCC | 6 cut(s) | 115, 253, 433, 514, 537, 647 |
| BtgZI | GCGATG | 1 cut(s) | 245 |
| BtsCI | GGATG | 1 cut(s) | 649 |
| BtsIMutI | CAGTG | 1 cut(s) | 74 |
| BtuMI | TCGCGA | 1 cut(s) | 681 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 683 |
| CfoI | GCGC | 2 cut(s) | 83, 85 |
| Cfr13I | GGNCC | 2 cut(s) | 45, 646 |
| CseI | GACGC | 1 cut(s) | 74 |
| CviAII | CATG | 2 cut(s) | 344, 378 |
| DpnI | GATC | 2 cut(s) | 167, 209 |
| DpnII | GATC | 2 cut(s) | 165, 207 |
| DraIII | CACNNNGTG | 1 cut(s) | 510 |
| EaeI | YGGCCR | 4 cut(s) | 251, 431, 512, 535 |
| Eam1104I | CTCTTC | 3 cut(s) | 410, 473, 681 |
| EarI | CTCTTC | 3 cut(s) | 410, 473, 681 |
| EciI | GGCGGA | 1 cut(s) | 704 |
| Ecl136II | GAGCTC | 1 cut(s) | 685 |
| Eco24I | GRGCYC | 2 cut(s) | 60, 687 |
| Eco31I | GGTCTC | 1 cut(s) | 360 |
| Eco47I | GGWCC | 1 cut(s) | 45 |
| Eco53kI | GAGCTC | 1 cut(s) | 685 |
| Eco88I | CYCGRG | 1 cut(s) | 686 |
| EcoICRI | GAGCTC | 1 cut(s) | 685 |
| EcoRI | GAATTC | 1 cut(s) | 399 |
| EcoT38I | GRGCYC | 2 cut(s) | 60, 687 |
| FaeI | CATG | 2 cut(s) | 347, 381 |
| FaqI | GGGAC | 1 cut(s) | 361 |
| FatI | CATG | 2 cut(s) | 343, 377 |
| FblI | GTMKAC | 1 cut(s) | 33 |
| Fnu4HI | GCNGC | 3 cut(s) | 254, 280, 550 |
| FokI | GGATG | 1 cut(s) | 636 |
| FriOI | GRGCYC | 2 cut(s) | 60, 687 |
| Fsp4HI | GCNGC | 3 cut(s) | 254, 280, 550 |
| FspBI | CTAG | 4 cut(s) | 141, 173, 327, 721 |
| GlaI | GCGC | 2 cut(s) | 82, 84 |
| GluI | GCNGC | 3 cut(s) | 254, 280, 550 |
| HaeIII | GGCC | 6 cut(s) | 115, 253, 433, 514, 537, 647 |
| HapII | CCGG | 8 cut(s) | 43, 62, 169, 227, 270, 298, 494, 697 |
| HgaI | GACGC | 1 cut(s) | 74 |
| HhaI | GCGC | 2 cut(s) | 83, 85 |
| Hin1II | CATG | 2 cut(s) | 347, 381 |
| Hin6I | GCGC | 2 cut(s) | 81, 83 |
| HinP1I | GCGC | 2 cut(s) | 81, 83 |
| HincII | GTYRAC | 1 cut(s) | 34 |
| HindII | GTYRAC | 1 cut(s) | 34 |
| HinfI | GANTC | 3 cut(s) | 349, 416, 700 |
| HpaII | CCGG | 8 cut(s) | 43, 62, 169, 227, 270, 298, 494, 697 |
| HphI | GGTGA | 5 cut(s) | 186, 236, 329, 472, 676 |
| Hpy166II | GTNNAC | 4 cut(s) | 34, 244, 463, 523 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 179 |
| Hpy188III | TCNNGA | 4 cut(s) | 270, 327, 420, 680 |
| Hpy8I | GTNNAC | 4 cut(s) | 34, 244, 463, 523 |
| Hpy99I | CGWCG | 6 cut(s) | 10, 35, 363, 366, 399, 587 |
| HpyAV | CCTTC | 4 cut(s) | 47, 232, 298, 637 |
| HpyCH4III | ACNGT | 2 cut(s) | 241, 520 |
| HpyCH4V | TGCA | 1 cut(s) | 377 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 80, 313, 482, 534 |
| Hsp92II | CATG | 2 cut(s) | 347, 381 |
| HspAI | GCGC | 2 cut(s) | 81, 83 |
| Kpn2I | TCCGGA | 1 cut(s) | 269 |
| Kzo9I | GATC | 2 cut(s) | 165, 207 |
| LmnI | GCTCC | 2 cut(s) | 63, 533 |
| LpnPI | CCDG | 9 cut(s) | 56, 62, 75, 182, 240, 283, 311, 507, 710 |
| MaeI | CTAG | 4 cut(s) | 141, 173, 327, 721 |
| MalI | GATC | 2 cut(s) | 167, 209 |
| MbiI | CCGCTC | 2 cut(s) | 445, 528 |
| MboI | GATC | 2 cut(s) | 165, 207 |
| MboII | GAAGA | 6 cut(s) | 397, 460, 599, 602, 618, 668 |
| MflI | RGATCY | 1 cut(s) | 165 |
| MhlI | GDGCHC | 3 cut(s) | 60, 687, 693 |
| MlsI | TGGCCA | 2 cut(s) | 433, 514 |
| MluCI | AATT | 2 cut(s) | 321, 399 |
| MluNI | TGGCCA | 2 cut(s) | 433, 514 |
| MlyI | GAGTC | 2 cut(s) | 343, 694 |
| MmeI | TCCRAC | 2 cut(s) | 157, 412 |
| MnlI | CCTC | 6 cut(s) | 58, 121, 463, 476, 590, 684 |
| Mox20I | TGGCCA | 2 cut(s) | 433, 514 |
| MroI | TCCGGA | 1 cut(s) | 269 |
| MroXI | GAANNNNTTC | 1 cut(s) | 467 |
| MscI | TGGCCA | 2 cut(s) | 433, 514 |
| MslI | CAYNNNNRTG | 1 cut(s) | 342 |
| Msp20I | TGGCCA | 2 cut(s) | 433, 514 |
| MspI | CCGG | 8 cut(s) | 43, 62, 169, 227, 270, 298, 494, 697 |
| MspR9I | CCNGG | 3 cut(s) | 62, 227, 495 |
| MvnI | CGCG | 4 cut(s) | 83, 85, 552, 681 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 80, 313, 482, 534 |
| NciI | CCSGG | 3 cut(s) | 62, 227, 495 |
| NdeII | GATC | 2 cut(s) | 165, 207 |
| NlaIII | CATG | 2 cut(s) | 347, 381 |
| NlaIV | GGNNCC | 3 cut(s) | 59, 167, 499 |
| NruI | TCGCGA | 1 cut(s) | 681 |
| PaeR7I | CTCGAG | 1 cut(s) | 686 |
| PauI | GCGCGC | 1 cut(s) | 81 |
| PdmI | GAANNNNTTC | 1 cut(s) | 467 |
| PfeI | GAWTC | 1 cut(s) | 416 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 510 |
| PfoI | TCCNGGA | 1 cut(s) | 60 |
| PkrI | GCNGC | 3 cut(s) | 255, 281, 551 |
| PleI | GAGTC | 2 cut(s) | 343, 694 |
| PpsI | GAGTC | 2 cut(s) | 343, 694 |
| Psp124BI | GAGCTC | 1 cut(s) | 687 |
| PspN4I | GGNNCC | 3 cut(s) | 59, 167, 499 |
| PspPI | GGNCC | 2 cut(s) | 45, 646 |
| PspXI | VCTCGAGB | 1 cut(s) | 686 |
| PsuI | RGATCY | 1 cut(s) | 165 |
| PteI | GCGCGC | 1 cut(s) | 81 |
| RruI | TCGCGA | 1 cut(s) | 681 |
| RseI | CAYNNNNRTG | 1 cut(s) | 342 |
| SacI | GAGCTC | 1 cut(s) | 687 |
| SalI | GTCGAC | 1 cut(s) | 32 |
| SatI | GCNGC | 3 cut(s) | 254, 280, 550 |
| Sau3AI | GATC | 2 cut(s) | 165, 207 |
| Sau96I | GGNCC | 2 cut(s) | 45, 646 |
| SchI | GAGTC | 2 cut(s) | 343, 694 |
| ScrFI | CCNGG | 3 cut(s) | 62, 227, 495 |
| SduI | GDGCHC | 3 cut(s) | 60, 687, 693 |
| SetI | ASST | 8 cut(s) | 224, 249, 290, 372, 468, 676, 687, 712 |
| Sfr274I | CTCGAG | 1 cut(s) | 686 |
| SinI | GGWCC | 1 cut(s) | 45 |
| SlaI | CTCGAG | 1 cut(s) | 686 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 342 |
| SmlI | CTYRAG | 1 cut(s) | 686 |
| SmoI | CTYRAG | 1 cut(s) | 686 |
| Sse9I | AATT | 2 cut(s) | 321, 399 |
| SsiI | CCGC | 9 cut(s) | 254, 280, 443, 476, 526, 550, 662, 694, 715 |
| SspMI | CTAG | 4 cut(s) | 141, 173, 327, 721 |
| SstI | GAGCTC | 1 cut(s) | 687 |
| StyD4I | CCNGG | 3 cut(s) | 60, 225, 493 |
| TaaI | ACNGT | 2 cut(s) | 241, 520 |
| TaqI | TCGA | 7 cut(s) | 33, 291, 303, 358, 397, 582, 687 |
| TasI | AATT | 2 cut(s) | 321, 399 |
| TauI | GCSGC | 3 cut(s) | 256, 282, 552 |
| TfiI | GAWTC | 1 cut(s) | 416 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TspDTI | ATGAA | 2 cut(s) | 599, 603 |
| TspRI | CASTG | 1 cut(s) | 81 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 510 |
| VpaK11BI | GGWCC | 1 cut(s) | 45 |
| XapI | RAATTY | 2 cut(s) | 321, 399 |
| XbaI | TCTAGA | 1 cut(s) | 326 |
| XhoI | CTCGAG | 1 cut(s) | 686 |
| XmiI | GTMKAC | 1 cut(s) | 33 |
| XmnI | GAANNNNTTC | 1 cut(s) | 467 |
| XspI | CTAG | 4 cut(s) | 141, 173, 327, 721 |