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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1801 |
| Acc36I | ACCTGC | 5 cut(s) | 1423, 1540, 1801, 1816, 1920 |
| Acc65I | GGTACC | 1 cut(s) | 553 |
| AccB1I | GGYRCC | 1 cut(s) | 553 |
| AccBSI | CCGCTC | 1 cut(s) | 1088 |
| AccI | GTMKAC | 1 cut(s) | 690 |
| AclWI | GGATC | 4 cut(s) | 187, 200, 1055, 1484 |
| AcoI | YGGCCR | 5 cut(s) | 70, 246, 955, 981, 1142 |
| AcuI | CTGAAG | 6 cut(s) | 717, 720, 858, 1155, 1350, 1491 |
| AcvI | CACGTG | 1 cut(s) | 2084 |
| AdeI | CACNNNGTG | 1 cut(s) | 1457 |
| AfaI | GTAC | 8 cut(s) | 290, 329, 350, 555, 569, 1014, 1359, 1704 |
| AfeI | AGCGCT | 1 cut(s) | 1206 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 50, 667, 901, 935, 953, 1113, 1114, 1948 |
| AgeI | ACCGGT | 1 cut(s) | 1582 |
| AgsI | TTSAA | 4 cut(s) | 209, 392, 866, 1409 |
| AjnI | CCWGG | 9 cut(s) | 406, 575, 593, 900, 952, 1108, 1539, 1720, 1830 |
| Alw21I | GWGCWC | 4 cut(s) | 507, 889, 1792, 1804 |
| Alw26I | GTCTC | 4 cut(s) | 146, 300, 1394, 2067 |
| Alw44I | GTGCAC | 1 cut(s) | 1788 |
| AlwI | GGATC | 4 cut(s) | 187, 200, 1055, 1484 |
| Ama87I | CYCGRG | 1 cut(s) | 1667 |
| Aor51HI | AGCGCT | 1 cut(s) | 1206 |
| ApaI | GGGCCC | 2 cut(s) | 612, 673 |
| ApaLI | GTGCAC | 1 cut(s) | 1788 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 752, 784 |
| AsiGI | ACCGGT | 1 cut(s) | 1582 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1230 |
| Asp718I | GGTACC | 1 cut(s) | 553 |
| AsuC2I | CCSGG | 2 cut(s) | 980, 1785 |
| AsuHPI | GGTGA | 3 cut(s) | 1290, 1520, 2008 |
| AsuNHI | GCTAGC | 3 cut(s) | 1178, 1207, 2123 |
| AvaI | CYCGRG | 1 cut(s) | 1667 |
| AvaII | GGWCC | 9 cut(s) | 747, 871, 1092, 1219, 1766, 1828, 1909, 1938, 1951 |
| AxyI | CCTNAGG | 3 cut(s) | 1341, 1608, 1882 |
| BaeGI | GKGCMC | 3 cut(s) | 612, 673, 1792 |
| BalI | TGGCCA | 3 cut(s) | 72, 957, 1144 |
| BamHI | GGATCC | 1 cut(s) | 192 |
| BanI | GGYRCC | 1 cut(s) | 553 |
| BanII | GRGCYC | 6 cut(s) | 507, 612, 673, 889, 1503, 1804 |
| BauI | CACGAG | 1 cut(s) | 1872 |
| BbrPI | CACGTG | 1 cut(s) | 2084 |
| BbsI | GAAGAC | 1 cut(s) | 846 |
| Bbv12I | GWGCWC | 4 cut(s) | 507, 889, 1792, 1804 |
| BccI | CCATC | 7 cut(s) | 38, 53, 261, 388, 1153, 1604, 1810 |
| BceAI | ACGGC | 2 cut(s) | 67, 331 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 255, 289, 491, 525 |
| BciT130I | CCWGG | 9 cut(s) | 408, 577, 595, 902, 954, 1110, 1541, 1722, 1832 |
| BcnI | CCSGG | 2 cut(s) | 980, 1785 |
| BcoDI | GTCTC | 4 cut(s) | 146, 300, 1394, 2067 |
| BfmI | CTRYAG | 3 cut(s) | 687, 1026, 1431 |
| BfoI | RGCGCY | 3 cut(s) | 126, 1208, 1214 |
| BfuAI | ACCTGC | 5 cut(s) | 1423, 1540, 1801, 1816, 1920 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 537, 2054 |
| BmcAI | AGTACT | 2 cut(s) | 290, 1014 |
| Bme18I | GGWCC | 9 cut(s) | 747, 871, 1092, 1219, 1766, 1828, 1909, 1938, 1951 |
| BmeT110I | CYCGRG | 1 cut(s) | 1667 |
| BmrI | ACTGGG | 1 cut(s) | 1978 |
| BmsI | GCATC | 5 cut(s) | 151, 333, 918, 1321, 1877 |
| BmtI | GCTAGC | 3 cut(s) | 1182, 1211, 2127 |
| BmuI | ACTGGG | 1 cut(s) | 1978 |
| BpiI | GAAGAC | 1 cut(s) | 846 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 3 cut(s) | 915, 1428, 1704 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1302, 2041, 2076 |
| BpuEI | CTTGAG | 4 cut(s) | 601, 1509, 1788, 2030 |
| BpuMI | CCSGG | 2 cut(s) | 980, 1785 |
| BsaAI | YACGTR | 1 cut(s) | 2084 |
| BsaBI | GATNNNNATC | 1 cut(s) | 379 |
| BsaI | GGTCTC | 1 cut(s) | 146 |
| BsaWI | WCCGGW | 2 cut(s) | 1576, 1582 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 50, 667, 901, 935, 953, 1113, 1114, 1948 |
| Bse118I | RCCGGY | 4 cut(s) | 244, 628, 877, 1582 |
| Bse1I | ACTGG | 6 cut(s) | 40, 557, 969, 1133, 1445, 1984 |
| Bse21I | CCTNAGG | 3 cut(s) | 1341, 1608, 1882 |
| Bse8I | GATNNNNATC | 1 cut(s) | 379 |
| BseBI | CCWGG | 9 cut(s) | 408, 577, 595, 902, 954, 1110, 1541, 1722, 1832 |
| BseGI | GGATG | 1 cut(s) | 142 |
| BseJI | GATNNNNATC | 1 cut(s) | 379 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 50, 667, 901, 935, 953, 1113, 1114, 1948 |
| BseMII | CTCAG | 9 cut(s) | 508, 782, 1293, 1332, 1488, 1622, 2039, 2078, 2090 |
| BseNI | ACTGG | 6 cut(s) | 40, 557, 969, 1133, 1445, 1984 |
| BseRI | GAGGAG | 4 cut(s) | 879, 1358, 1653, 1707 |
| BseSI | GKGCMC | 3 cut(s) | 612, 673, 1792 |
| BseX3I | CGGCCG | 1 cut(s) | 246 |
| BseYI | CCCAGC | 3 cut(s) | 108, 895, 1157 |
| BsgI | GTGCAG | 1 cut(s) | 1298 |
| Bsh1285I | CGRYCG | 4 cut(s) | 249, 878, 1587, 1891 |
| BshNI | GGYRCC | 1 cut(s) | 553 |
| BshTI | ACCGGT | 1 cut(s) | 1582 |
| BsiEI | CGRYCG | 4 cut(s) | 249, 878, 1587, 1891 |
| BsiHKAI | GWGCWC | 4 cut(s) | 507, 889, 1792, 1804 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1667 |
| BsiSI | CCGG | 9 cut(s) | 165, 245, 629, 878, 980, 1307, 1577, 1583, 1784 |
| BslFI | GGGAC | 3 cut(s) | 545, 1448, 1757 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 50, 667, 901, 935, 953, 1113, 1114, 1948 |
| BsmAI | GTCTC | 4 cut(s) | 146, 300, 1394, 2067 |
| BsmBI | CGTCTC | 1 cut(s) | 300 |
| BsmFI | GGGAC | 3 cut(s) | 545, 1448, 1757 |
| BsmI | GAATGC | 1 cut(s) | 1573 |
| Bso31I | GGTCTC | 1 cut(s) | 146 |
| BsoBI | CYCGRG | 1 cut(s) | 1667 |
| Bsp120I | GGGCCC | 2 cut(s) | 608, 669 |
| Bsp1286I | GDGCHC | 7 cut(s) | 507, 612, 673, 889, 1503, 1792, 1804 |
| Bsp1407I | TGTACA | 1 cut(s) | 1357 |
| Bsp143I | GATC | 9 cut(s) | 192, 250, 412, 456, 655, 1060, 1281, 1489, 1888 |
| Bsp19I | CCATGG | 1 cut(s) | 102 |
| BspCNI | CTCAG | 9 cut(s) | 507, 783, 1294, 1333, 1489, 1621, 2038, 2077, 2089 |
| BspMAI | CTGCAG | 2 cut(s) | 1030, 1435 |
| BspMI | ACCTGC | 5 cut(s) | 1423, 1540, 1801, 1816, 1920 |
| BspOI | GCTAGC | 3 cut(s) | 1182, 1211, 2127 |
| BspPI | GGATC | 4 cut(s) | 187, 200, 1055, 1484 |
| BspQI | GCTCTTC | 1 cut(s) | 1174 |
| BspT107I | GGYRCC | 1 cut(s) | 553 |
| BspTNI | GGTCTC | 1 cut(s) | 146 |
| BsrBI | CCGCTC | 1 cut(s) | 1088 |
| BsrFI | RCCGGY | 4 cut(s) | 244, 628, 877, 1582 |
| BsrGI | TGTACA | 1 cut(s) | 1357 |
| BsrI | ACTGG | 6 cut(s) | 40, 557, 969, 1133, 1445, 1984 |
| BssAI | RCCGGY | 4 cut(s) | 244, 628, 877, 1582 |
| BssMI | GATC | 9 cut(s) | 192, 250, 412, 456, 655, 1060, 1281, 1489, 1888 |
| BssSI | CACGAG | 1 cut(s) | 1872 |
| BssT1I | CCWWGG | 3 cut(s) | 102, 1183, 1762 |
| Bst2BI | CACGAG | 1 cut(s) | 1872 |
| Bst2UI | CCWGG | 9 cut(s) | 408, 577, 595, 902, 954, 1110, 1541, 1722, 1832 |
| Bst4CI | ACNGT | 3 cut(s) | 353, 1252, 1405 |
| Bst6I | CTCTTC | 5 cut(s) | 696, 773, 867, 1174, 1467 |
| BstAUI | TGTACA | 1 cut(s) | 1357 |
| BstBAI | YACGTR | 1 cut(s) | 2084 |
| BstDSI | CCRYGG | 2 cut(s) | 102, 1215 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 933 |
| BstF5I | GGATG | 1 cut(s) | 142 |
| BstH2I | RGCGCY | 3 cut(s) | 126, 1208, 1214 |
| BstKTI | GATC | 9 cut(s) | 195, 253, 415, 459, 658, 1063, 1284, 1492, 1891 |
| BstMAI | GTCTC | 4 cut(s) | 146, 300, 1394, 2067 |
| BstMBI | GATC | 9 cut(s) | 192, 250, 412, 456, 655, 1060, 1281, 1489, 1888 |
| BstMCI | CGRYCG | 4 cut(s) | 249, 878, 1587, 1891 |
| BstNI | CCWGG | 9 cut(s) | 408, 577, 595, 902, 954, 1110, 1541, 1722, 1832 |
| BstNSI | RCATGY | 4 cut(s) | 643, 823, 1157, 1376 |
| BstSFI | CTRYAG | 3 cut(s) | 687, 1026, 1431 |
| BstSLI | GKGCMC | 3 cut(s) | 612, 673, 1792 |
| BstV2I | GAAGAC | 1 cut(s) | 846 |
| BstX2I | RGATCY | 1 cut(s) | 192 |
| BstYI | RGATCY | 1 cut(s) | 192 |
| BstZI | CGGCCG | 1 cut(s) | 246 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1341, 1608, 1882 |
| BtgI | CCRYGG | 2 cut(s) | 102, 1215 |
| BtgZI | GCGATG | 2 cut(s) | 401, 2072 |
| BtsCI | GGATG | 1 cut(s) | 142 |
| BtsIMutI | CAGTG | 3 cut(s) | 33, 976, 1126 |
| BveI | ACCTGC | 5 cut(s) | 1423, 1540, 1801, 1816, 1920 |
| Cfr10I | RCCGGY | 4 cut(s) | 244, 628, 877, 1582 |
| CseI | GACGC | 4 cut(s) | 692, 1646, 1891, 2129 |
| Csp6I | GTAC | 8 cut(s) | 289, 328, 349, 554, 568, 1013, 1358, 1703 |
| CspAI | ACCGGT | 1 cut(s) | 1582 |
| CviAII | CATG | 8 cut(s) | 68, 103, 640, 820, 1154, 1373, 1516, 2162 |
| CviQI | GTAC | 8 cut(s) | 289, 328, 349, 554, 568, 1013, 1358, 1703 |
| DpnI | GATC | 9 cut(s) | 194, 252, 414, 458, 657, 1062, 1283, 1491, 1890 |
| DpnII | GATC | 9 cut(s) | 192, 250, 412, 456, 655, 1060, 1281, 1489, 1888 |
| DraIII | CACNNNGTG | 1 cut(s) | 1457 |
| EaeI | YGGCCR | 5 cut(s) | 70, 246, 955, 981, 1142 |
| EagI | CGGCCG | 1 cut(s) | 246 |
| Eam1104I | CTCTTC | 5 cut(s) | 696, 773, 867, 1174, 1467 |
| EarI | CTCTTC | 5 cut(s) | 696, 773, 867, 1174, 1467 |
| EciI | GGCGGA | 1 cut(s) | 206 |
| Ecl136II | GAGCTC | 3 cut(s) | 505, 887, 1802 |
| EclXI | CGGCCG | 1 cut(s) | 246 |
| Eco130I | CCWWGG | 3 cut(s) | 102, 1183, 1762 |
| Eco24I | GRGCYC | 6 cut(s) | 507, 612, 673, 889, 1503, 1804 |
| Eco31I | GGTCTC | 1 cut(s) | 146 |
| Eco32I | GATATC | 2 cut(s) | 22, 229 |
| Eco47I | GGWCC | 9 cut(s) | 747, 871, 1092, 1219, 1766, 1828, 1909, 1938, 1951 |
| Eco47III | AGCGCT | 1 cut(s) | 1206 |
| Eco52I | CGGCCG | 1 cut(s) | 246 |
| Eco53kI | GAGCTC | 3 cut(s) | 505, 887, 1802 |
| Eco57I | CTGAAG | 6 cut(s) | 717, 720, 858, 1155, 1350, 1491 |
| Eco72I | CACGTG | 1 cut(s) | 2084 |
| Eco81I | CCTNAGG | 3 cut(s) | 1341, 1608, 1882 |
| Eco88I | CYCGRG | 1 cut(s) | 1667 |
| EcoICRI | GAGCTC | 3 cut(s) | 505, 887, 1802 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 933 |
| EcoO109I | RGGNCCY | 4 cut(s) | 609, 852, 1909, 1951 |
| EcoRII | CCWGG | 9 cut(s) | 406, 575, 593, 900, 952, 1108, 1539, 1720, 1830 |
| EcoRV | GATATC | 2 cut(s) | 22, 229 |
| EcoT14I | CCWWGG | 3 cut(s) | 102, 1183, 1762 |
| EcoT22I | ATGCAT | 1 cut(s) | 144 |
| EcoT38I | GRGCYC | 6 cut(s) | 507, 612, 673, 889, 1503, 1804 |
| ErhI | CCWWGG | 3 cut(s) | 102, 1183, 1762 |
| Esp3I | CGTCTC | 1 cut(s) | 300 |
| FaeI | CATG | 8 cut(s) | 71, 106, 643, 823, 1157, 1376, 1519, 2165 |
| FaqI | GGGAC | 3 cut(s) | 545, 1448, 1757 |
| FatI | CATG | 8 cut(s) | 67, 102, 639, 819, 1153, 1372, 1515, 2161 |
| FauI | CCCGC | 5 cut(s) | 240, 536, 633, 1510, 2158 |
| FblI | GTMKAC | 1 cut(s) | 690 |
| FokI | GGATG | 1 cut(s) | 129 |
| FriOI | GRGCYC | 6 cut(s) | 507, 612, 673, 889, 1503, 1804 |
| GsaI | CCCAGC | 3 cut(s) | 112, 899, 1161 |
| GsuI | CTGGAG | 3 cut(s) | 915, 1428, 1704 |
| HaeII | RGCGCY | 3 cut(s) | 126, 1208, 1214 |
| HapII | CCGG | 9 cut(s) | 165, 245, 629, 878, 980, 1307, 1577, 1583, 1784 |
| HgaI | GACGC | 4 cut(s) | 692, 1646, 1891, 2129 |
| Hin1II | CATG | 8 cut(s) | 71, 106, 643, 823, 1157, 1376, 1519, 2165 |
| HindIII | AAGCTT | 1 cut(s) | 729 |
| HpaII | CCGG | 9 cut(s) | 165, 245, 629, 878, 980, 1307, 1577, 1583, 1784 |
| HphI | GGTGA | 3 cut(s) | 1290, 1520, 2008 |
| Hpy166II | GTNNAC | 6 cut(s) | 691, 923, 1219, 1298, 1790, 2174 |
| Hpy8I | GTNNAC | 6 cut(s) | 691, 923, 1219, 1298, 1790, 2174 |
| Hpy99I | CGWCG | 5 cut(s) | 53, 686, 764, 1061, 1604 |
| HpyAV | CCTTC | 8 cut(s) | 929, 1000, 1157, 1241, 1334, 1374, 1943, 2059 |
| HpyCH4III | ACNGT | 3 cut(s) | 353, 1252, 1405 |
| HpyCH4IV | ACGT | 3 cut(s) | 357, 1746, 2083 |
| HpySE526I | ACGT | 3 cut(s) | 357, 1746, 2083 |
| Hsp92II | CATG | 8 cut(s) | 71, 106, 643, 823, 1157, 1376, 1519, 2165 |
| KpnI | GGTACC | 1 cut(s) | 557 |
| KroI | GCCGGC | 1 cut(s) | 628 |
| KroNI | GCCGGC | 1 cut(s) | 630 |
| Kzo9I | GATC | 9 cut(s) | 192, 250, 412, 456, 655, 1060, 1281, 1489, 1888 |
| LguI | GCTCTTC | 1 cut(s) | 1174 |
| LmnI | GCTCC | 5 cut(s) | 517, 892, 1345, 1556, 1720 |
| LweI | GCATC | 5 cut(s) | 151, 333, 918, 1321, 1877 |
| MaeII | ACGT | 3 cut(s) | 357, 1746, 2083 |
| MaeIII | GTNAC | 4 cut(s) | 7, 353, 1874, 1996 |
| MalI | GATC | 9 cut(s) | 194, 252, 414, 458, 657, 1062, 1283, 1491, 1890 |
| MbiI | CCGCTC | 1 cut(s) | 1088 |
| MboI | GATC | 9 cut(s) | 192, 250, 412, 456, 655, 1060, 1281, 1489, 1888 |
| MfeI | CAATTG | 2 cut(s) | 548, 739 |
| MflI | RGATCY | 1 cut(s) | 192 |
| MhlI | GDGCHC | 7 cut(s) | 507, 612, 673, 889, 1503, 1792, 1804 |
| MlsI | TGGCCA | 3 cut(s) | 72, 957, 1144 |
| MluCI | AATT | 7 cut(s) | 74, 209, 360, 533, 548, 739, 915 |
| MluNI | TGGCCA | 3 cut(s) | 72, 957, 1144 |
| MlyI | GAGTC | 3 cut(s) | 74, 566, 1871 |
| MmeI | TCCRAC | 2 cut(s) | 898, 2119 |
| Mox20I | TGGCCA | 3 cut(s) | 72, 957, 1144 |
| Mph1103I | ATGCAT | 1 cut(s) | 144 |
| MroNI | GCCGGC | 1 cut(s) | 628 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1230 |
| MscI | TGGCCA | 3 cut(s) | 72, 957, 1144 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1274 |
| Msp20I | TGGCCA | 3 cut(s) | 72, 957, 1144 |
| MspA1I | CMGCKG | 1 cut(s) | 1505 |
| MspI | CCGG | 9 cut(s) | 165, 245, 629, 878, 980, 1307, 1577, 1583, 1784 |
| MteI | GCGCNGCGC | 1 cut(s) | 947 |
| MunI | CAATTG | 2 cut(s) | 548, 739 |
| Mva1269I | GAATGC | 1 cut(s) | 1573 |
| MvaI | CCWGG | 9 cut(s) | 408, 577, 595, 902, 954, 1110, 1541, 1722, 1832 |
| NaeI | GCCGGC | 1 cut(s) | 630 |
| NciI | CCSGG | 2 cut(s) | 980, 1785 |
| NcoI | CCATGG | 1 cut(s) | 102 |
| NdeII | GATC | 9 cut(s) | 192, 250, 412, 456, 655, 1060, 1281, 1489, 1888 |
| NgoMIV | GCCGGC | 1 cut(s) | 628 |
| NheI | GCTAGC | 3 cut(s) | 1178, 1207, 2123 |
| NlaIII | CATG | 8 cut(s) | 71, 106, 643, 823, 1157, 1376, 1519, 2165 |
| NmuCI | GTSAC | 4 cut(s) | 7, 353, 1874, 1996 |
| NsiI | ATGCAT | 1 cut(s) | 144 |
| NspI | RCATGY | 4 cut(s) | 643, 823, 1157, 1376 |
| PaeI | GCATGC | 1 cut(s) | 643 |
| PaqCI | CACCTGC | 1 cut(s) | 1801 |
| PasI | CCCWGGG | 1 cut(s) | 1109 |
| PciSI | GCTCTTC | 1 cut(s) | 1174 |
| PctI | GAATGC | 1 cut(s) | 1573 |
| PdiI | GCCGGC | 1 cut(s) | 630 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1230 |
| PfeI | GAWTC | 8 cut(s) | 375, 477, 603, 1022, 1037, 1259, 1439, 1917 |
| PfoI | TCCNGGA | 2 cut(s) | 575, 1720 |
| PinAI | ACCGGT | 1 cut(s) | 1582 |
| Ple19I | CGATCG | 1 cut(s) | 1891 |
| PleI | GAGTC | 3 cut(s) | 74, 566, 1871 |
| PmaCI | CACGTG | 1 cut(s) | 2084 |
| PmlI | CACGTG | 1 cut(s) | 2084 |
| PpsI | GAGTC | 3 cut(s) | 74, 566, 1871 |
| Ppu21I | YACGTR | 1 cut(s) | 2084 |
| PpuMI | RGGWCCY | 2 cut(s) | 1909, 1951 |
| Psp124BI | GAGCTC | 3 cut(s) | 507, 889, 1804 |
| Psp5II | RGGWCCY | 2 cut(s) | 1909, 1951 |
| Psp6I | CCWGG | 9 cut(s) | 406, 575, 593, 900, 952, 1108, 1539, 1720, 1830 |
| PspCI | CACGTG | 1 cut(s) | 2084 |
| PspFI | CCCAGC | 3 cut(s) | 108, 895, 1157 |
| PspGI | CCWGG | 9 cut(s) | 406, 575, 593, 900, 952, 1108, 1539, 1720, 1830 |
| PspOMI | GGGCCC | 2 cut(s) | 608, 669 |
| PspPPI | RGGWCCY | 2 cut(s) | 1909, 1951 |
| PstI | CTGCAG | 2 cut(s) | 1030, 1435 |
| PsuI | RGATCY | 1 cut(s) | 192 |
| PvuI | CGATCG | 1 cut(s) | 1891 |
| RsaI | GTAC | 8 cut(s) | 290, 329, 350, 555, 569, 1014, 1359, 1704 |
| RsaNI | GTAC | 8 cut(s) | 289, 328, 349, 554, 568, 1013, 1358, 1703 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1274 |
| SacI | GAGCTC | 3 cut(s) | 507, 889, 1804 |
| SapI | GCTCTTC | 1 cut(s) | 1174 |
| Sau3AI | GATC | 9 cut(s) | 192, 250, 412, 456, 655, 1060, 1281, 1489, 1888 |
| ScaI | AGTACT | 2 cut(s) | 290, 1014 |
| SchI | GAGTC | 3 cut(s) | 74, 566, 1871 |
| SduI | GDGCHC | 7 cut(s) | 507, 612, 673, 889, 1503, 1792, 1804 |
| SfaNI | GCATC | 5 cut(s) | 151, 333, 918, 1321, 1877 |
| SfcI | CTRYAG | 3 cut(s) | 687, 1026, 1431 |
| SinI | GGWCC | 9 cut(s) | 747, 871, 1092, 1219, 1766, 1828, 1909, 1938, 1951 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1274 |
| SmlI | CTYRAG | 4 cut(s) | 616, 1524, 1803, 2009 |
| SmoI | CTYRAG | 4 cut(s) | 616, 1524, 1803, 2009 |
| SphI | GCATGC | 1 cut(s) | 643 |
| Sse9I | AATT | 7 cut(s) | 74, 209, 360, 533, 548, 739, 915 |
| SspI | AATATT | 1 cut(s) | 1811 |
| SstI | GAGCTC | 3 cut(s) | 507, 889, 1804 |
| StyI | CCWWGG | 3 cut(s) | 102, 1183, 1762 |
| TaaI | ACNGT | 3 cut(s) | 353, 1252, 1405 |
| TaiI | ACGT | 3 cut(s) | 360, 1749, 2086 |
| TaqI | TCGA | 8 cut(s) | 48, 265, 681, 1602, 1707, 1891, 1971, 2052 |
| TaqII | GACCGA | 1 cut(s) | 1151 |
| TasI | AATT | 7 cut(s) | 74, 209, 360, 533, 548, 739, 915 |
| TatI | WGTACW | 4 cut(s) | 288, 327, 1012, 1357 |
| TauI | GCSGC | 7 cut(s) | 222, 279, 453, 485, 949, 1628, 1848 |
| TfiI | GAWTC | 8 cut(s) | 375, 477, 603, 1022, 1037, 1259, 1439, 1917 |
| TscAI | CASTG | 3 cut(s) | 40, 976, 1133 |
| TseFI | GTSAC | 4 cut(s) | 7, 353, 1874, 1996 |
| Tsp45I | GTSAC | 4 cut(s) | 7, 353, 1874, 1996 |
| TspDTI | ATGAA | 3 cut(s) | 1136, 1580, 2154 |
| TspGWI | ACGGA | 1 cut(s) | 708 |
| TspRI | CASTG | 3 cut(s) | 40, 976, 1133 |
| VneI | GTGCAC | 1 cut(s) | 1788 |
| VpaK11BI | GGWCC | 9 cut(s) | 747, 871, 1092, 1219, 1766, 1828, 1909, 1938, 1951 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 933 |
| XbaI | TCTAGA | 2 cut(s) | 1546, 2134 |
| XceI | RCATGY | 4 cut(s) | 643, 823, 1157, 1376 |
| XmiI | GTMKAC | 1 cut(s) | 690 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1230 |
| ZrmI | AGTACT | 2 cut(s) | 290, 1014 |
| Zsp2I | ATGCAT | 1 cut(s) | 144 |