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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 223 |
| Acc65I | GGTACC | 1 cut(s) | 191 |
| AccB1I | GGYRCC | 1 cut(s) | 191 |
| AccI | GTMKAC | 2 cut(s) | 292, 328 |
| AccII | CGCG | 3 cut(s) | 70, 521, 587 |
| AccIII | TCCGGA | 1 cut(s) | 112 |
| AciI | CCGC | 6 cut(s) | 68, 86, 585, 596, 599, 795 |
| AclWI | GGATC | 1 cut(s) | 45 |
| AcoI | YGGCCR | 2 cut(s) | 593, 619 |
| AcuI | CTGAAG | 2 cut(s) | 496, 714 |
| AcyI | GRCGYC | 1 cut(s) | 481 |
| AfaI | GTAC | 2 cut(s) | 193, 652 |
| AfeI | AGCGCT | 1 cut(s) | 611 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 506, 539, 573, 574, 591, 624 |
| AjnI | CCWGG | 5 cut(s) | 76, 213, 231, 538, 590 |
| AluBI | AGCT | 5 cut(s) | 136, 428, 525, 663, 669 |
| AluI | AGCT | 5 cut(s) | 136, 428, 525, 663, 669 |
| Alw21I | GWGCWC | 3 cut(s) | 430, 463, 527 |
| Alw26I | GTCTC | 1 cut(s) | 374 |
| AlwI | GGATC | 1 cut(s) | 45 |
| Aor13HI | TCCGGA | 1 cut(s) | 112 |
| Aor51HI | AGCGCT | 1 cut(s) | 611 |
| AoxI | GGCC | 8 cut(s) | 176, 258, 489, 535, 541, 593, 619, 646 |
| ApeKI | GCWGC | 3 cut(s) | 88, 120, 784 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 230, 262, 390, 422 |
| Asp718I | GGTACC | 1 cut(s) | 191 |
| AspLEI | GCGC | 5 cut(s) | 72, 93, 584, 589, 612 |
| AspS9I | GGNCC | 3 cut(s) | 246, 259, 536 |
| AsuC2I | CCSGG | 1 cut(s) | 534 |
| AsuHPI | GGTGA | 1 cut(s) | 607 |
| AvaII | GGWCC | 1 cut(s) | 246 |
| BanI | GGYRCC | 1 cut(s) | 191 |
| BanII | GRGCYC | 3 cut(s) | 311, 430, 527 |
| BbsI | GAAGAC | 2 cut(s) | 484, 720 |
| Bbv12I | GWGCWC | 3 cut(s) | 430, 463, 527 |
| BbvCI | CCTCAGC | 1 cut(s) | 670 |
| BbvI | GCAGC | 3 cut(s) | 100, 107, 771 |
| BccI | CCATC | 1 cut(s) | 102 |
| BceAI | ACGGC | 1 cut(s) | 633 |
| BciT130I | CCWGG | 5 cut(s) | 78, 215, 233, 540, 592 |
| BcnI | CCSGG | 1 cut(s) | 534 |
| BcoDI | GTCTC | 1 cut(s) | 374 |
| BfaI | CTAG | 1 cut(s) | 256 |
| BfmI | CTRYAG | 3 cut(s) | 325, 664, 788 |
| BfoI | RGCGCY | 2 cut(s) | 94, 613 |
| BisI | GCNGC | 6 cut(s) | 89, 121, 585, 596, 599, 785 |
| BlsI | GCNGC | 6 cut(s) | 90, 122, 586, 597, 600, 786 |
| Bme1390I | CCNGG | 6 cut(s) | 78, 215, 233, 534, 540, 592 |
| Bme18I | GGWCC | 1 cut(s) | 246 |
| BmgT120I | GGNCC | 3 cut(s) | 246, 259, 536 |
| BmiI | GGNNCC | 2 cut(s) | 193, 261 |
| BmrFI | CCNGG | 6 cut(s) | 78, 215, 233, 534, 540, 592 |
| BmsI | GCATC | 2 cut(s) | 200, 556 |
| BpiI | GAAGAC | 2 cut(s) | 484, 720 |
| Bpu10I | CCTNAGC | 2 cut(s) | 429, 670 |
| BpuMI | CCSGG | 1 cut(s) | 534 |
| BsaHI | GRCGYC | 1 cut(s) | 481 |
| BsaJI | CCNNGG | 3 cut(s) | 124, 538, 590 |
| BsaWI | WCCGGW | 1 cut(s) | 112 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 509, 539 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 506, 539, 573, 574, 591, 624 |
| Bse118I | RCCGGY | 3 cut(s) | 266, 543, 617 |
| Bse1I | ACTGG | 2 cut(s) | 387, 638 |
| BseAI | TCCGGA | 1 cut(s) | 112 |
| BseBI | CCWGG | 5 cut(s) | 78, 215, 233, 540, 592 |
| BseDI | CCNNGG | 3 cut(s) | 124, 538, 590 |
| BseGI | GGATG | 1 cut(s) | 109 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 506, 539, 573, 574, 591, 624 |
| BseMII | CTCAG | 3 cut(s) | 146, 443, 661 |
| BseNI | ACTGG | 2 cut(s) | 387, 638 |
| BseRI | GAGGAG | 1 cut(s) | 517 |
| BseXI | GCAGC | 3 cut(s) | 100, 107, 771 |
| Bsh1236I | CGCG | 3 cut(s) | 70, 521, 587 |
| Bsh1285I | CGRYCG | 1 cut(s) | 68 |
| BshFI | GGCC | 8 cut(s) | 178, 260, 491, 537, 543, 595, 621, 648 |
| BshNI | GGYRCC | 1 cut(s) | 191 |
| BsiEI | CGRYCG | 1 cut(s) | 68 |
| BsiHKAI | GWGCWC | 3 cut(s) | 430, 463, 527 |
| BsiSI | CCGG | 5 cut(s) | 113, 267, 534, 544, 618 |
| BslFI | GGGAC | 1 cut(s) | 347 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 506, 539, 573, 574, 591, 624 |
| BsmAI | GTCTC | 1 cut(s) | 374 |
| BsmFI | GGGAC | 1 cut(s) | 347 |
| BsmI | GAATGC | 1 cut(s) | 81 |
| BsnI | GGCC | 8 cut(s) | 178, 260, 491, 537, 543, 595, 621, 648 |
| Bsp1286I | GDGCHC | 4 cut(s) | 311, 430, 463, 527 |
| Bsp13I | TCCGGA | 1 cut(s) | 112 |
| Bsp143I | GATC | 1 cut(s) | 50 |
| BspACI | CCGC | 6 cut(s) | 68, 86, 585, 596, 599, 795 |
| BspANI | GGCC | 8 cut(s) | 178, 260, 491, 537, 543, 595, 621, 648 |
| BspCNI | CTCAG | 3 cut(s) | 145, 442, 662 |
| BspEI | TCCGGA | 1 cut(s) | 112 |
| BspFNI | CGCG | 3 cut(s) | 70, 521, 587 |
| BspLI | GGNNCC | 2 cut(s) | 193, 261 |
| BspPI | GGATC | 1 cut(s) | 45 |
| BspT107I | GGYRCC | 1 cut(s) | 191 |
| BsrFI | RCCGGY | 3 cut(s) | 266, 543, 617 |
| BsrI | ACTGG | 2 cut(s) | 387, 638 |
| BssAI | RCCGGY | 3 cut(s) | 266, 543, 617 |
| BssECI | CCNNGG | 3 cut(s) | 124, 538, 590 |
| BssMI | GATC | 1 cut(s) | 50 |
| BssNI | GRCGYC | 1 cut(s) | 481 |
| Bst2UI | CCWGG | 5 cut(s) | 78, 215, 233, 540, 592 |
| Bst4CI | ACNGT | 2 cut(s) | 205, 713 |
| Bst6I | CTCTTC | 2 cut(s) | 411, 683 |
| BstACI | GRCGYC | 1 cut(s) | 481 |
| BstC8I | GCNNGC | 8 cut(s) | 74, 283, 426, 463, 467, 523, 545, 795 |
| BstDEI | CTNAG | 3 cut(s) | 132, 429, 670 |
| BstF5I | GGATG | 1 cut(s) | 109 |
| BstFNI | CGCG | 3 cut(s) | 70, 521, 587 |
| BstH2I | RGCGCY | 2 cut(s) | 94, 613 |
| BstHHI | GCGC | 5 cut(s) | 72, 93, 584, 589, 612 |
| BstKTI | GATC | 1 cut(s) | 53 |
| BstMAI | GTCTC | 1 cut(s) | 374 |
| BstMBI | GATC | 1 cut(s) | 50 |
| BstMCI | CGRYCG | 1 cut(s) | 68 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 78, 434, 595, 607, 618, 654, 790 |
| BstNI | CCWGG | 5 cut(s) | 78, 215, 233, 540, 592 |
| BstSCI | CCNGG | 6 cut(s) | 76, 213, 231, 532, 538, 590 |
| BstSFI | CTRYAG | 3 cut(s) | 325, 664, 788 |
| BstUI | CGCG | 3 cut(s) | 70, 521, 587 |
| BstV1I | GCAGC | 3 cut(s) | 100, 107, 771 |
| BstV2I | GAAGAC | 2 cut(s) | 484, 720 |
| BsuRI | GGCC | 8 cut(s) | 178, 260, 491, 537, 543, 595, 621, 648 |
| BtsCI | GGATG | 1 cut(s) | 109 |
| BtsIMutI | CAGTG | 1 cut(s) | 201 |
| Cac8I | GCNNGC | 8 cut(s) | 74, 283, 426, 463, 467, 523, 545, 795 |
| CfoI | GCGC | 5 cut(s) | 72, 93, 584, 589, 612 |
| Cfr10I | RCCGGY | 3 cut(s) | 266, 543, 617 |
| Cfr13I | GGNCC | 3 cut(s) | 246, 259, 536 |
| CseI | GACGC | 2 cut(s) | 330, 489 |
| Csp6I | GTAC | 2 cut(s) | 192, 651 |
| CviQI | GTAC | 2 cut(s) | 192, 651 |
| DdeI | CTNAG | 3 cut(s) | 132, 429, 670 |
| DpnI | GATC | 1 cut(s) | 52 |
| DpnII | GATC | 1 cut(s) | 50 |
| EaeI | YGGCCR | 2 cut(s) | 593, 619 |
| Eam1104I | CTCTTC | 2 cut(s) | 411, 683 |
| EarI | CTCTTC | 2 cut(s) | 411, 683 |
| Ecl136II | GAGCTC | 2 cut(s) | 428, 525 |
| Eco147I | AGGCCT | 1 cut(s) | 491 |
| Eco24I | GRGCYC | 3 cut(s) | 311, 430, 527 |
| Eco47I | GGWCC | 1 cut(s) | 246 |
| Eco47III | AGCGCT | 1 cut(s) | 611 |
| Eco53kI | GAGCTC | 2 cut(s) | 428, 525 |
| Eco57I | CTGAAG | 2 cut(s) | 496, 714 |
| EcoICRI | GAGCTC | 2 cut(s) | 428, 525 |
| EcoO109I | RGGNCCY | 1 cut(s) | 259 |
| EcoRII | CCWGG | 5 cut(s) | 76, 213, 231, 538, 590 |
| EcoT38I | GRGCYC | 3 cut(s) | 311, 430, 527 |
| FaiI | YATR | 9 cut(s) | 34, 139, 148, 208, 223, 279, 349, 440, 781 |
| FaqI | GGGAC | 1 cut(s) | 347 |
| FauI | CCCGC | 1 cut(s) | 802 |
| FblI | GTMKAC | 2 cut(s) | 292, 328 |
| Fnu4HI | GCNGC | 6 cut(s) | 89, 121, 585, 596, 599, 785 |
| FokI | GGATG | 1 cut(s) | 96 |
| FriOI | GRGCYC | 3 cut(s) | 311, 430, 527 |
| Fsp4HI | GCNGC | 6 cut(s) | 89, 121, 585, 596, 599, 785 |
| FspBI | CTAG | 1 cut(s) | 256 |
| GlaI | GCGC | 5 cut(s) | 71, 92, 583, 588, 611 |
| GluI | GCNGC | 6 cut(s) | 89, 121, 585, 596, 599, 785 |
| HaeII | RGCGCY | 2 cut(s) | 94, 613 |
| HaeIII | GGCC | 8 cut(s) | 178, 260, 491, 537, 543, 595, 621, 648 |
| HapII | CCGG | 5 cut(s) | 113, 267, 534, 544, 618 |
| HgaI | GACGC | 2 cut(s) | 330, 489 |
| HhaI | GCGC | 5 cut(s) | 72, 93, 584, 589, 612 |
| Hin1I | GRCGYC | 1 cut(s) | 481 |
| Hin6I | GCGC | 5 cut(s) | 70, 91, 582, 587, 610 |
| HinP1I | GCGC | 5 cut(s) | 70, 91, 582, 587, 610 |
| HincII | GTYRAC | 2 cut(s) | 293, 377 |
| HindII | GTYRAC | 2 cut(s) | 293, 377 |
| HinfI | GANTC | 4 cut(s) | 13, 241, 386, 675 |
| HpaII | CCGG | 5 cut(s) | 113, 267, 534, 544, 618 |
| HphI | GGTGA | 1 cut(s) | 607 |
| Hpy166II | GTNNAC | 5 cut(s) | 249, 293, 329, 377, 561 |
| Hpy188I | TCNGA | 6 cut(s) | 107, 449, 476, 513, 692, 733 |
| Hpy188III | TCNNGA | 5 cut(s) | 63, 113, 300, 431, 558 |
| Hpy8I | GTNNAC | 5 cut(s) | 249, 293, 329, 377, 561 |
| Hpy99I | CGWCG | 1 cut(s) | 702 |
| HpyAV | CCTTC | 5 cut(s) | 262, 306, 336, 567, 638 |
| HpyCH4III | ACNGT | 2 cut(s) | 205, 713 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 78, 434, 595, 607, 618, 654, 790 |
| HpyF3I | CTNAG | 3 cut(s) | 132, 429, 670 |
| Hsp92I | GRCGYC | 1 cut(s) | 481 |
| HspAI | GCGC | 5 cut(s) | 70, 91, 582, 587, 610 |
| Kpn2I | TCCGGA | 1 cut(s) | 112 |
| KpnI | GGTACC | 1 cut(s) | 195 |
| KroI | GCCGGC | 1 cut(s) | 543 |
| KroNI | GCCGGC | 1 cut(s) | 545 |
| Kzo9I | GATC | 1 cut(s) | 50 |
| LmnI | GCTCC | 2 cut(s) | 155, 530 |
| Lsp1109I | GCAGC | 3 cut(s) | 100, 107, 771 |
| LweI | GCATC | 2 cut(s) | 200, 556 |
| MaeI | CTAG | 1 cut(s) | 256 |
| MalI | GATC | 1 cut(s) | 52 |
| MboI | GATC | 1 cut(s) | 50 |
| MfeI | CAATTG | 1 cut(s) | 186 |
| MhlI | GDGCHC | 4 cut(s) | 311, 430, 463, 527 |
| MluCI | AATT | 5 cut(s) | 171, 186, 218, 553, 747 |
| MlyI | GAGTC | 2 cut(s) | 380, 669 |
| MroI | TCCGGA | 1 cut(s) | 112 |
| MroNI | GCCGGC | 1 cut(s) | 543 |
| MseI | TTAA | 1 cut(s) | 750 |
| MspA1I | CMGCKG | 1 cut(s) | 669 |
| MspI | CCGG | 5 cut(s) | 113, 267, 534, 544, 618 |
| MspR9I | CCNGG | 6 cut(s) | 78, 215, 233, 534, 540, 592 |
| MteI | GCGCNGCGC | 1 cut(s) | 585 |
| MunI | CAATTG | 1 cut(s) | 186 |
| Mva1269I | GAATGC | 1 cut(s) | 81 |
| MvaI | CCWGG | 5 cut(s) | 78, 215, 233, 540, 592 |
| MvnI | CGCG | 3 cut(s) | 70, 521, 587 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 78, 434, 595, 607, 618, 654, 790 |
| NaeI | GCCGGC | 1 cut(s) | 545 |
| NciI | CCSGG | 1 cut(s) | 534 |
| NdeII | GATC | 1 cut(s) | 50 |
| NgoMIV | GCCGGC | 1 cut(s) | 543 |
| NlaIV | GGNNCC | 2 cut(s) | 193, 261 |
| NmeAIII | GCCGAG | 1 cut(s) | 149 |
| PceI | AGGCCT | 1 cut(s) | 491 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 289, 298 |
| PctI | GAATGC | 1 cut(s) | 81 |
| PdiI | GCCGGC | 1 cut(s) | 545 |
| PfeI | GAWTC | 2 cut(s) | 13, 241 |
| PkrI | GCNGC | 6 cut(s) | 90, 122, 586, 597, 600, 786 |
| PleI | GAGTC | 2 cut(s) | 380, 669 |
| PpsI | GAGTC | 2 cut(s) | 380, 669 |
| PsiI | TTATAA | 1 cut(s) | 223 |
| Psp124BI | GAGCTC | 2 cut(s) | 430, 527 |
| Psp6I | CCWGG | 5 cut(s) | 76, 213, 231, 538, 590 |
| PspGI | CCWGG | 5 cut(s) | 76, 213, 231, 538, 590 |
| PspN4I | GGNNCC | 2 cut(s) | 193, 261 |
| PspPI | GGNCC | 3 cut(s) | 246, 259, 536 |
| PvuII | CAGCTG | 1 cut(s) | 669 |
| RsaI | GTAC | 2 cut(s) | 193, 652 |
| RsaNI | GTAC | 2 cut(s) | 192, 651 |
| SacI | GAGCTC | 2 cut(s) | 430, 527 |
| SalI | GTCGAC | 1 cut(s) | 291 |
| SaqAI | TTAA | 1 cut(s) | 750 |
| SatI | GCNGC | 6 cut(s) | 89, 121, 585, 596, 599, 785 |
| Sau3AI | GATC | 1 cut(s) | 50 |
| Sau96I | GGNCC | 3 cut(s) | 246, 259, 536 |
| SchI | GAGTC | 2 cut(s) | 380, 669 |
| ScrFI | CCNGG | 6 cut(s) | 78, 215, 233, 534, 540, 592 |
| SduI | GDGCHC | 4 cut(s) | 311, 430, 463, 527 |
| SfaNI | GCATC | 2 cut(s) | 200, 556 |
| SfcI | CTRYAG | 3 cut(s) | 325, 664, 788 |
| SinI | GGWCC | 1 cut(s) | 246 |
| Sse9I | AATT | 5 cut(s) | 171, 186, 218, 553, 747 |
| SseBI | AGGCCT | 1 cut(s) | 491 |
| SsiI | CCGC | 6 cut(s) | 68, 86, 585, 596, 599, 795 |
| SspMI | CTAG | 1 cut(s) | 256 |
| SstI | GAGCTC | 2 cut(s) | 430, 527 |
| StuI | AGGCCT | 1 cut(s) | 491 |
| StyD4I | CCNGG | 6 cut(s) | 76, 213, 231, 532, 538, 590 |
| TaaI | ACNGT | 2 cut(s) | 205, 713 |
| TaqI | TCGA | 3 cut(s) | 292, 311, 494 |
| TaqII | GACCGA | 1 cut(s) | 234 |
| TasI | AATT | 5 cut(s) | 171, 186, 218, 553, 747 |
| TauI | GCSGC | 3 cut(s) | 587, 598, 601 |
| TfiI | GAWTC | 2 cut(s) | 13, 241 |
| Tru1I | TTAA | 1 cut(s) | 750 |
| Tru9I | TTAA | 1 cut(s) | 750 |
| TscAI | CASTG | 1 cut(s) | 208 |
| TseI | GCWGC | 3 cut(s) | 88, 120, 784 |
| TspDTI | ATGAA | 1 cut(s) | 154 |
| TspRI | CASTG | 1 cut(s) | 208 |
| VpaK11BI | GGWCC | 1 cut(s) | 246 |
| XmiI | GTMKAC | 2 cut(s) | 292, 328 |
| XspI | CTAG | 1 cut(s) | 256 |