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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 115 |
| AccBSI | CCGCTC | 1 cut(s) | 186 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AciI | CCGC | 2 cut(s) | 184, 486 |
| AcsI | RAATTY | 1 cut(s) | 323 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 169, 299, 393 |
| AgsI | TTSAA | 2 cut(s) | 114, 238 |
| AhlI | ACTAGT | 1 cut(s) | 500 |
| AjnI | CCWGG | 1 cut(s) | 102 |
| AoxI | GGCC | 3 cut(s) | 12, 60, 354 |
| ApaI | GGGCCC | 1 cut(s) | 16 |
| ApeKI | GCWGC | 2 cut(s) | 190, 369 |
| ApoI | RAATTY | 1 cut(s) | 323 |
| AspS9I | GGNCC | 4 cut(s) | 12, 13, 98, 355 |
| AsuC2I | CCSGG | 1 cut(s) | 16 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| AvaII | GGWCC | 1 cut(s) | 98 |
| BaeGI | GKGCMC | 1 cut(s) | 16 |
| BanII | GRGCYC | 1 cut(s) | 16 |
| BauI | CACGAG | 1 cut(s) | 164 |
| BbvI | GCAGC | 2 cut(s) | 177, 381 |
| BccI | CCATC | 2 cut(s) | 76, 302 |
| BceAI | ACGGC | 1 cut(s) | 75 |
| BciT130I | CCWGG | 1 cut(s) | 104 |
| BcnI | CCSGG | 1 cut(s) | 16 |
| BcuI | ACTAGT | 1 cut(s) | 500 |
| BfaI | CTAG | 1 cut(s) | 501 |
| BfuAI | ACCTGC | 1 cut(s) | 115 |
| BisI | GCNGC | 3 cut(s) | 184, 191, 370 |
| BlsI | GCNGC | 3 cut(s) | 185, 192, 371 |
| Bme1390I | CCNGG | 2 cut(s) | 16, 104 |
| Bme18I | GGWCC | 1 cut(s) | 98 |
| BmgT120I | GGNCC | 4 cut(s) | 12, 13, 98, 355 |
| BmiI | GGNNCC | 2 cut(s) | 14, 100 |
| BmrFI | CCNGG | 2 cut(s) | 16, 104 |
| BmrI | ACTGGG | 1 cut(s) | 19 |
| BmuI | ACTGGG | 1 cut(s) | 19 |
| BpmI | CTGGAG | 1 cut(s) | 125 |
| BpuMI | CCSGG | 1 cut(s) | 16 |
| BsaJI | CCNNGG | 3 cut(s) | 102, 351, 392 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 169, 299, 393 |
| Bse1I | ACTGG | 4 cut(s) | 14, 289, 367, 436 |
| Bse3DI | GCAATG | 1 cut(s) | 438 |
| BseBI | CCWGG | 1 cut(s) | 104 |
| BseDI | CCNNGG | 3 cut(s) | 102, 351, 392 |
| BseGI | GGATG | 1 cut(s) | 68 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 169, 299, 393 |
| BseMI | GCAATG | 1 cut(s) | 438 |
| BseNI | ACTGG | 4 cut(s) | 14, 289, 367, 436 |
| BseSI | GKGCMC | 1 cut(s) | 16 |
| BseXI | GCAGC | 2 cut(s) | 177, 381 |
| BsgI | GTGCAG | 1 cut(s) | 299 |
| BshFI | GGCC | 3 cut(s) | 14, 62, 356 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 169, 299, 393 |
| BsnI | GGCC | 3 cut(s) | 14, 62, 356 |
| Bsp120I | GGGCCC | 1 cut(s) | 12 |
| Bsp1286I | GDGCHC | 1 cut(s) | 16 |
| Bsp19I | CCATGG | 1 cut(s) | 351 |
| BspACI | CCGC | 2 cut(s) | 184, 486 |
| BspANI | GGCC | 3 cut(s) | 14, 62, 356 |
| BspLI | GGNNCC | 2 cut(s) | 14, 100 |
| BspMI | ACCTGC | 1 cut(s) | 115 |
| BsrBI | CCGCTC | 1 cut(s) | 186 |
| BsrDI | GCAATG | 1 cut(s) | 438 |
| BsrI | ACTGG | 4 cut(s) | 14, 289, 367, 436 |
| BssECI | CCNNGG | 3 cut(s) | 102, 351, 392 |
| BssSI | CACGAG | 1 cut(s) | 164 |
| BssT1I | CCWWGG | 1 cut(s) | 351 |
| Bst2BI | CACGAG | 1 cut(s) | 164 |
| Bst2UI | CCWGG | 1 cut(s) | 104 |
| Bst4CI | ACNGT | 3 cut(s) | 118, 302, 396 |
| BstC8I | GCNNGC | 3 cut(s) | 181, 188, 402 |
| BstDEI | CTNAG | 1 cut(s) | 507 |
| BstDSI | CCRYGG | 2 cut(s) | 351, 392 |
| BstF5I | GGATG | 1 cut(s) | 68 |
| BstNI | CCWGG | 1 cut(s) | 104 |
| BstSCI | CCNGG | 2 cut(s) | 14, 102 |
| BstSLI | GKGCMC | 1 cut(s) | 16 |
| BstV1I | GCAGC | 2 cut(s) | 177, 381 |
| BsuRI | GGCC | 3 cut(s) | 14, 62, 356 |
| BtgI | CCRYGG | 2 cut(s) | 351, 392 |
| BtsCI | GGATG | 1 cut(s) | 68 |
| BveI | ACCTGC | 1 cut(s) | 115 |
| Cac8I | GCNNGC | 3 cut(s) | 181, 188, 402 |
| Cfr13I | GGNCC | 4 cut(s) | 12, 13, 98, 355 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 1 cut(s) | 352 |
| CviJI | RGCY | 7 cut(s) | 14, 62, 356, 400, 404, 460, 496 |
| CviKI_1 | RGCY | 7 cut(s) | 14, 62, 356, 400, 404, 460, 496 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 1 cut(s) | 507 |
| EciI | GGCGGA | 1 cut(s) | 475 |
| Eco130I | CCWWGG | 1 cut(s) | 351 |
| Eco24I | GRGCYC | 1 cut(s) | 16 |
| Eco47I | GGWCC | 1 cut(s) | 98 |
| EcoO109I | RGGNCCY | 1 cut(s) | 98 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoRII | CCWGG | 1 cut(s) | 102 |
| EcoT14I | CCWWGG | 1 cut(s) | 351 |
| EcoT38I | GRGCYC | 1 cut(s) | 16 |
| ErhI | CCWWGG | 1 cut(s) | 351 |
| FaeI | CATG | 1 cut(s) | 355 |
| FaiI | YATR | 4 cut(s) | 150, 353, 378, 423 |
| FatI | CATG | 1 cut(s) | 351 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 3 cut(s) | 184, 191, 370 |
| FokI | GGATG | 1 cut(s) | 55 |
| FriOI | GRGCYC | 1 cut(s) | 16 |
| Fsp4HI | GCNGC | 3 cut(s) | 184, 191, 370 |
| FspBI | CTAG | 1 cut(s) | 501 |
| GluI | GCNGC | 3 cut(s) | 184, 191, 370 |
| GsuI | CTGGAG | 1 cut(s) | 125 |
| HaeIII | GGCC | 3 cut(s) | 14, 62, 356 |
| HapII | CCGG | 1 cut(s) | 16 |
| Hin1II | CATG | 1 cut(s) | 355 |
| HincII | GTYRAC | 1 cut(s) | 76 |
| HindII | GTYRAC | 1 cut(s) | 76 |
| HinfI | GANTC | 2 cut(s) | 43, 329 |
| HpaII | CCGG | 1 cut(s) | 16 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 305 |
| Hpy188I | TCNGA | 2 cut(s) | 94, 334 |
| Hpy188III | TCNNGA | 2 cut(s) | 37, 449 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 305 |
| Hpy99I | CGWCG | 2 cut(s) | 77, 302 |
| HpyAV | CCTTC | 3 cut(s) | 89, 169, 205 |
| HpyCH4III | ACNGT | 3 cut(s) | 118, 302, 396 |
| HpyCH4V | TGCA | 3 cut(s) | 316, 369, 465 |
| HpyF3I | CTNAG | 1 cut(s) | 507 |
| Hsp92II | CATG | 1 cut(s) | 355 |
| Lsp1109I | GCAGC | 2 cut(s) | 177, 381 |
| MaeI | CTAG | 1 cut(s) | 501 |
| MbiI | CCGCTC | 1 cut(s) | 186 |
| MhlI | GDGCHC | 1 cut(s) | 16 |
| MluCI | AATT | 2 cut(s) | 238, 323 |
| MlyI | GAGTC | 1 cut(s) | 37 |
| MnlI | CCTC | 3 cut(s) | 64, 100, 173 |
| MspI | CCGG | 1 cut(s) | 16 |
| MspR9I | CCNGG | 2 cut(s) | 16, 104 |
| MvaI | CCWGG | 1 cut(s) | 104 |
| NciI | CCSGG | 1 cut(s) | 16 |
| NcoI | CCATGG | 1 cut(s) | 351 |
| NlaIII | CATG | 1 cut(s) | 355 |
| NlaIV | GGNNCC | 2 cut(s) | 14, 100 |
| PfeI | GAWTC | 1 cut(s) | 329 |
| PkrI | GCNGC | 3 cut(s) | 185, 192, 371 |
| PleI | GAGTC | 1 cut(s) | 37 |
| PpsI | GAGTC | 1 cut(s) | 37 |
| PpuMI | RGGWCCY | 1 cut(s) | 98 |
| Psp5II | RGGWCCY | 1 cut(s) | 98 |
| Psp6I | CCWGG | 1 cut(s) | 102 |
| PspGI | CCWGG | 1 cut(s) | 102 |
| PspN4I | GGNNCC | 2 cut(s) | 14, 100 |
| PspOMI | GGGCCC | 1 cut(s) | 12 |
| PspPI | GGNCC | 4 cut(s) | 12, 13, 98, 355 |
| PspPPI | RGGWCCY | 1 cut(s) | 98 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| SalI | GTCGAC | 1 cut(s) | 74 |
| SatI | GCNGC | 3 cut(s) | 184, 191, 370 |
| Sau96I | GGNCC | 4 cut(s) | 12, 13, 98, 355 |
| SchI | GAGTC | 1 cut(s) | 37 |
| ScrFI | CCNGG | 2 cut(s) | 16, 104 |
| SduI | GDGCHC | 1 cut(s) | 16 |
| SetI | ASST | 3 cut(s) | 129, 161, 230 |
| SinI | GGWCC | 1 cut(s) | 98 |
| SpeI | ACTAGT | 1 cut(s) | 500 |
| Sse9I | AATT | 2 cut(s) | 238, 323 |
| SsiI | CCGC | 2 cut(s) | 184, 486 |
| SspI | AATATT | 1 cut(s) | 455 |
| SspMI | CTAG | 1 cut(s) | 501 |
| StyD4I | CCNGG | 2 cut(s) | 14, 102 |
| StyI | CCWWGG | 1 cut(s) | 351 |
| TaaI | ACNGT | 3 cut(s) | 118, 302, 396 |
| TaqI | TCGA | 3 cut(s) | 75, 297, 327 |
| TasI | AATT | 2 cut(s) | 238, 323 |
| TauI | GCSGC | 1 cut(s) | 186 |
| TfiI | GAWTC | 1 cut(s) | 329 |
| TseI | GCWGC | 2 cut(s) | 190, 369 |
| TspDTI | ATGAA | 2 cut(s) | 21, 460 |
| TspGWI | ACGGA | 1 cut(s) | 61 |
| VpaK11BI | GGWCC | 1 cut(s) | 98 |
| XapI | RAATTY | 1 cut(s) | 323 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 163 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 501 |