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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 196 |
| AccB1I | GGYRCC | 1 cut(s) | 196 |
| AccII | CGCG | 4 cut(s) | 75, 96, 98, 526 |
| AciI | CCGC | 3 cut(s) | 73, 94, 172 |
| AclWI | GGATC | 1 cut(s) | 50 |
| AcuI | CTGAAG | 1 cut(s) | 501 |
| AfaI | GTAC | 1 cut(s) | 198 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 260, 261, 310, 538 |
| AgsI | TTSAA | 4 cut(s) | 35, 191, 461, 509 |
| AjnI | CCWGG | 4 cut(s) | 49, 81, 218, 537 |
| AluBI | AGCT | 4 cut(s) | 141, 148, 178, 433 |
| AluI | AGCT | 4 cut(s) | 141, 148, 178, 433 |
| Alw26I | GTCTC | 1 cut(s) | 379 |
| AlwI | GGATC | 1 cut(s) | 50 |
| AoxI | GGCC | 6 cut(s) | 251, 263, 312, 318, 500, 540 |
| ApaI | GGGCCC | 2 cut(s) | 255, 267 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 395, 427 |
| Asp718I | GGTACC | 1 cut(s) | 196 |
| AspLEI | GCGC | 3 cut(s) | 77, 98, 526 |
| AspS9I | GGNCC | 7 cut(s) | 251, 252, 263, 264, 312, 514, 541 |
| AsuC2I | CCSGG | 2 cut(s) | 262, 499 |
| AsuHPI | GGTGA | 1 cut(s) | 65 |
| AvaII | GGWCC | 1 cut(s) | 514 |
| BaeGI | GKGCMC | 2 cut(s) | 255, 267 |
| BanI | GGYRCC | 1 cut(s) | 196 |
| BanII | GRGCYC | 3 cut(s) | 255, 267, 532 |
| BbsI | GAAGAC | 1 cut(s) | 489 |
| BbvCI | CCTCAGC | 1 cut(s) | 434 |
| BccI | CCATC | 1 cut(s) | 329 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 134, 168, 395, 429 |
| BciT130I | CCWGG | 4 cut(s) | 51, 83, 220, 539 |
| BciVI | GTATCC | 1 cut(s) | 344 |
| BcnI | CCSGG | 2 cut(s) | 262, 499 |
| BcoDI | GTCTC | 1 cut(s) | 379 |
| BfaI | CTAG | 3 cut(s) | 293, 492, 534 |
| BfuI | GTATCC | 1 cut(s) | 344 |
| BisI | GCNGC | 1 cut(s) | 94 |
| BlsI | GCNGC | 1 cut(s) | 95 |
| Bme1390I | CCNGG | 6 cut(s) | 51, 83, 220, 262, 499, 539 |
| Bme18I | GGWCC | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 7 cut(s) | 251, 252, 263, 264, 312, 514, 541 |
| BmiI | GGNNCC | 7 cut(s) | 198, 253, 254, 265, 266, 340, 440 |
| BmrFI | CCNGG | 6 cut(s) | 51, 83, 220, 262, 499, 539 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BpiI | GAAGAC | 1 cut(s) | 489 |
| Bpu10I | CCTNAGC | 1 cut(s) | 434 |
| BpuMI | CCSGG | 2 cut(s) | 262, 499 |
| BsaJI | CCNNGG | 3 cut(s) | 49, 315, 497 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 260, 261, 310, 538 |
| Bse118I | RCCGGY | 1 cut(s) | 520 |
| BseBI | CCWGG | 4 cut(s) | 51, 83, 220, 539 |
| BseDI | CCNNGG | 3 cut(s) | 49, 315, 497 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 260, 261, 310, 538 |
| BseMII | CTCAG | 2 cut(s) | 151, 425 |
| BseSI | GKGCMC | 2 cut(s) | 255, 267 |
| BseYI | CCCAGC | 1 cut(s) | 267 |
| Bsh1236I | CGCG | 4 cut(s) | 75, 96, 98, 526 |
| Bsh1285I | CGRYCG | 1 cut(s) | 521 |
| BshFI | GGCC | 6 cut(s) | 253, 265, 314, 320, 502, 542 |
| BshNI | GGYRCC | 1 cut(s) | 196 |
| BsiEI | CGRYCG | 1 cut(s) | 521 |
| BsiSI | CCGG | 3 cut(s) | 261, 499, 521 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 260, 261, 310, 538 |
| BsmAI | GTCTC | 1 cut(s) | 379 |
| BsnI | GGCC | 6 cut(s) | 253, 265, 314, 320, 502, 542 |
| Bsp120I | GGGCCC | 2 cut(s) | 251, 263 |
| Bsp1286I | GDGCHC | 3 cut(s) | 255, 267, 532 |
| Bsp143I | GATC | 2 cut(s) | 55, 99 |
| BspACI | CCGC | 3 cut(s) | 73, 94, 172 |
| BspANI | GGCC | 6 cut(s) | 253, 265, 314, 320, 502, 542 |
| BspCNI | CTCAG | 2 cut(s) | 150, 426 |
| BspFNI | CGCG | 4 cut(s) | 75, 96, 98, 526 |
| BspLI | GGNNCC | 7 cut(s) | 198, 253, 254, 265, 266, 340, 440 |
| BspPI | GGATC | 1 cut(s) | 50 |
| BspT107I | GGYRCC | 1 cut(s) | 196 |
| BsrFI | RCCGGY | 1 cut(s) | 520 |
| BssAI | RCCGGY | 1 cut(s) | 520 |
| BssECI | CCNNGG | 3 cut(s) | 49, 315, 497 |
| BssMI | GATC | 2 cut(s) | 55, 99 |
| BssT1I | CCWWGG | 1 cut(s) | 315 |
| Bst2UI | CCWGG | 4 cut(s) | 51, 83, 220, 539 |
| Bst4CI | ACNGT | 1 cut(s) | 201 |
| Bst6I | CTCTTC | 3 cut(s) | 339, 428, 510 |
| BstC8I | GCNNGC | 8 cut(s) | 79, 172, 176, 284, 431, 468, 472, 528 |
| BstDEI | CTNAG | 2 cut(s) | 137, 434 |
| BstFNI | CGCG | 4 cut(s) | 75, 96, 98, 526 |
| BstHHI | GCGC | 3 cut(s) | 77, 98, 526 |
| BstKTI | GATC | 2 cut(s) | 58, 102 |
| BstMAI | GTCTC | 1 cut(s) | 379 |
| BstMBI | GATC | 2 cut(s) | 55, 99 |
| BstMCI | CGRYCG | 1 cut(s) | 521 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 83, 326 |
| BstNI | CCWGG | 4 cut(s) | 51, 83, 220, 539 |
| BstNSI | RCATGY | 1 cut(s) | 286 |
| BstSCI | CCNGG | 6 cut(s) | 49, 81, 218, 260, 497, 537 |
| BstSLI | GKGCMC | 2 cut(s) | 255, 267 |
| BstUI | CGCG | 4 cut(s) | 75, 96, 98, 526 |
| BstV2I | GAAGAC | 1 cut(s) | 489 |
| BsuI | GTATCC | 1 cut(s) | 344 |
| BsuRI | GGCC | 6 cut(s) | 253, 265, 314, 320, 502, 542 |
| BtsIMutI | CAGTG | 1 cut(s) | 126 |
| Cac8I | GCNNGC | 8 cut(s) | 79, 172, 176, 284, 431, 468, 472, 528 |
| CfoI | GCGC | 3 cut(s) | 77, 98, 526 |
| Cfr10I | RCCGGY | 1 cut(s) | 520 |
| Cfr13I | GGNCC | 7 cut(s) | 251, 252, 263, 264, 312, 514, 541 |
| CseI | GACGC | 1 cut(s) | 335 |
| Csp6I | GTAC | 1 cut(s) | 197 |
| CviAII | CATG | 1 cut(s) | 283 |
| CviQI | GTAC | 1 cut(s) | 197 |
| DdeI | CTNAG | 2 cut(s) | 137, 434 |
| DpnI | GATC | 2 cut(s) | 57, 101 |
| DpnII | GATC | 2 cut(s) | 55, 99 |
| Eam1104I | CTCTTC | 3 cut(s) | 339, 428, 510 |
| EarI | CTCTTC | 3 cut(s) | 339, 428, 510 |
| Eco130I | CCWWGG | 1 cut(s) | 315 |
| Eco24I | GRGCYC | 3 cut(s) | 255, 267, 532 |
| Eco32I | GATATC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 1 cut(s) | 514 |
| Eco57I | CTGAAG | 1 cut(s) | 501 |
| EcoO109I | RGGNCCY | 2 cut(s) | 252, 264 |
| EcoRII | CCWGG | 4 cut(s) | 49, 81, 218, 537 |
| EcoRV | GATATC | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 315 |
| EcoT38I | GRGCYC | 3 cut(s) | 255, 267, 532 |
| ErhI | CCWWGG | 1 cut(s) | 315 |
| FaeI | CATG | 1 cut(s) | 286 |
| FaiI | YATR | 6 cut(s) | 39, 66, 153, 211, 279, 284 |
| FatI | CATG | 1 cut(s) | 282 |
| FauI | CCCGC | 1 cut(s) | 179 |
| Fnu4HI | GCNGC | 1 cut(s) | 94 |
| FriOI | GRGCYC | 3 cut(s) | 255, 267, 532 |
| Fsp4HI | GCNGC | 1 cut(s) | 94 |
| FspBI | CTAG | 3 cut(s) | 293, 492, 534 |
| GlaI | GCGC | 3 cut(s) | 76, 97, 525 |
| GluI | GCNGC | 1 cut(s) | 94 |
| GsaI | CCCAGC | 1 cut(s) | 271 |
| HaeIII | GGCC | 6 cut(s) | 253, 265, 314, 320, 502, 542 |
| HapII | CCGG | 3 cut(s) | 261, 499, 521 |
| HgaI | GACGC | 1 cut(s) | 335 |
| HhaI | GCGC | 3 cut(s) | 77, 98, 526 |
| Hin1II | CATG | 1 cut(s) | 286 |
| Hin6I | GCGC | 3 cut(s) | 75, 96, 524 |
| HinP1I | GCGC | 3 cut(s) | 75, 96, 524 |
| HinfI | GANTC | 3 cut(s) | 4, 18, 391 |
| HpaII | CCGG | 3 cut(s) | 261, 499, 521 |
| HphI | GGTGA | 1 cut(s) | 65 |
| Hpy166II | GTNNAC | 1 cut(s) | 334 |
| Hpy188I | TCNGA | 3 cut(s) | 112, 481, 518 |
| Hpy188III | TCNNGA | 1 cut(s) | 118 |
| Hpy8I | GTNNAC | 1 cut(s) | 334 |
| Hpy99I | CGWCG | 1 cut(s) | 329 |
| HpyAV | CCTTC | 1 cut(s) | 267 |
| HpyCH4III | ACNGT | 1 cut(s) | 201 |
| HpyCH4V | TGCA | 2 cut(s) | 155, 416 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 83, 326 |
| HpyF3I | CTNAG | 2 cut(s) | 137, 434 |
| Hsp92II | CATG | 1 cut(s) | 286 |
| HspAI | GCGC | 3 cut(s) | 75, 96, 524 |
| KpnI | GGTACC | 1 cut(s) | 200 |
| Kzo9I | GATC | 2 cut(s) | 55, 99 |
| LmnI | GCTCC | 1 cut(s) | 240 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeI | CTAG | 3 cut(s) | 293, 492, 534 |
| MalI | GATC | 2 cut(s) | 57, 101 |
| MboI | GATC | 2 cut(s) | 55, 99 |
| MboII | GAAGA | 5 cut(s) | 27, 356, 415, 494, 497 |
| MfeI | CAATTG | 2 cut(s) | 191, 382 |
| MhlI | GDGCHC | 3 cut(s) | 255, 267, 532 |
| MluCI | AATT | 2 cut(s) | 191, 382 |
| MlyI | GAGTC | 1 cut(s) | 385 |
| MmeI | TCCRAC | 1 cut(s) | 541 |
| MnlI | CCTC | 7 cut(s) | 34, 69, 216, 244, 340, 429, 513 |
| MspI | CCGG | 3 cut(s) | 261, 499, 521 |
| MspR9I | CCNGG | 6 cut(s) | 51, 83, 220, 262, 499, 539 |
| MunI | CAATTG | 2 cut(s) | 191, 382 |
| MvaI | CCWGG | 4 cut(s) | 51, 83, 220, 539 |
| MvnI | CGCG | 4 cut(s) | 75, 96, 98, 526 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 83, 326 |
| NciI | CCSGG | 2 cut(s) | 262, 499 |
| NdeII | GATC | 2 cut(s) | 55, 99 |
| NlaIII | CATG | 1 cut(s) | 286 |
| NlaIV | GGNNCC | 7 cut(s) | 198, 253, 254, 265, 266, 340, 440 |
| NspI | RCATGY | 1 cut(s) | 286 |
| PaeI | GCATGC | 1 cut(s) | 286 |
| PfeI | GAWTC | 2 cut(s) | 4, 18 |
| PkrI | GCNGC | 1 cut(s) | 95 |
| PleI | GAGTC | 1 cut(s) | 385 |
| PpsI | GAGTC | 1 cut(s) | 385 |
| Psp6I | CCWGG | 4 cut(s) | 49, 81, 218, 537 |
| PspFI | CCCAGC | 1 cut(s) | 267 |
| PspGI | CCWGG | 4 cut(s) | 49, 81, 218, 537 |
| PspN4I | GGNNCC | 7 cut(s) | 198, 253, 254, 265, 266, 340, 440 |
| PspOMI | GGGCCC | 2 cut(s) | 251, 263 |
| PspPI | GGNCC | 7 cut(s) | 251, 252, 263, 264, 312, 514, 541 |
| RsaI | GTAC | 1 cut(s) | 198 |
| RsaNI | GTAC | 1 cut(s) | 197 |
| SatI | GCNGC | 1 cut(s) | 94 |
| Sau3AI | GATC | 2 cut(s) | 55, 99 |
| Sau96I | GGNCC | 7 cut(s) | 251, 252, 263, 264, 312, 514, 541 |
| SchI | GAGTC | 1 cut(s) | 385 |
| ScrFI | CCNGG | 6 cut(s) | 51, 83, 220, 262, 499, 539 |
| SduI | GDGCHC | 3 cut(s) | 255, 267, 532 |
| SetI | ASST | 5 cut(s) | 143, 150, 180, 236, 435 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SinI | GGWCC | 1 cut(s) | 514 |
| SphI | GCATGC | 1 cut(s) | 286 |
| Sse9I | AATT | 2 cut(s) | 191, 382 |
| SsiI | CCGC | 3 cut(s) | 73, 94, 172 |
| SspMI | CTAG | 3 cut(s) | 293, 492, 534 |
| StyD4I | CCNGG | 6 cut(s) | 49, 81, 218, 260, 497, 537 |
| StyI | CCWWGG | 1 cut(s) | 315 |
| TaaI | ACNGT | 1 cut(s) | 201 |
| TaqI | TCGA | 2 cut(s) | 324, 453 |
| TaqII | GACCGA | 1 cut(s) | 170 |
| TasI | AATT | 2 cut(s) | 191, 382 |
| TauI | GCSGC | 1 cut(s) | 96 |
| TfiI | GAWTC | 2 cut(s) | 4, 18 |
| TscAI | CASTG | 1 cut(s) | 133 |
| TspGWI | ACGGA | 2 cut(s) | 351, 367 |
| TspRI | CASTG | 1 cut(s) | 133 |
| VpaK11BI | GGWCC | 1 cut(s) | 514 |
| XceI | RCATGY | 1 cut(s) | 286 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 328 |
| XspI | CTAG | 3 cut(s) | 293, 492, 534 |