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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1272 |
| AccB1I | GGYRCC | 1 cut(s) | 211 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 644 |
| AccII | CGCG | 9 cut(s) | 90, 113, 305, 541, 579, 621, 677, 1310, 1332 |
| AciI | CCGC | 8 cut(s) | 106, 412, 577, 677, 771, 1034, 1372, 1430 |
| AclWI | GGATC | 5 cut(s) | 143, 929, 961, 1348, 1382 |
| AcoI | YGGCCR | 2 cut(s) | 646, 768 |
| AcuI | CTGAAG | 2 cut(s) | 165, 1014 |
| AcyI | GRCGYC | 1 cut(s) | 231 |
| AfaI | GTAC | 2 cut(s) | 227, 924 |
| AgsI | TTSAA | 3 cut(s) | 50, 476, 1415 |
| AjnI | CCWGG | 6 cut(s) | 233, 552, 886, 969, 1277, 1404 |
| AluBI | AGCT | 6 cut(s) | 163, 641, 908, 1027, 1222, 1286 |
| AluI | AGCT | 6 cut(s) | 163, 641, 908, 1027, 1222, 1286 |
| Alw21I | GWGCWC | 1 cut(s) | 73 |
| Alw26I | GTCTC | 1 cut(s) | 1359 |
| AlwI | GGATC | 5 cut(s) | 143, 929, 961, 1348, 1382 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 644 |
| ApaI | GGGCCC | 1 cut(s) | 270 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 410, 442, 715, 747 |
| AspLEI | GCGC | 8 cut(s) | 96, 113, 307, 541, 623, 808, 1273, 1312 |
| AsuC2I | CCSGG | 3 cut(s) | 66, 277, 1152 |
| AsuHPI | GGTGA | 8 cut(s) | 542, 682, 788, 976, 1021, 1198, 1379, 1444 |
| AvaII | GGWCC | 4 cut(s) | 738, 890, 1036, 1395 |
| AxyI | CCTNAGG | 1 cut(s) | 1053 |
| BaeGI | GKGCMC | 1 cut(s) | 270 |
| BalI | TGGCCA | 1 cut(s) | 648 |
| BanI | GGYRCC | 1 cut(s) | 211 |
| BanII | GRGCYC | 5 cut(s) | 270, 331, 547, 585, 684 |
| BbsI | GAAGAC | 2 cut(s) | 378, 963 |
| Bbv12I | GWGCWC | 1 cut(s) | 73 |
| BccI | CCATC | 4 cut(s) | 443, 746, 1159, 1196 |
| BceAI | ACGGC | 2 cut(s) | 70, 1452 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 410, 444, 516, 550, 710, 744, 774, 808 |
| BciT130I | CCWGG | 6 cut(s) | 235, 554, 888, 971, 1279, 1406 |
| BciVI | GTATCC | 1 cut(s) | 359 |
| BcnI | CCSGG | 3 cut(s) | 66, 277, 1152 |
| BcoDI | GTCTC | 1 cut(s) | 1359 |
| BfaI | CTAG | 3 cut(s) | 654, 819, 1466 |
| BfmI | CTRYAG | 2 cut(s) | 79, 1226 |
| BfoI | RGCGCY | 1 cut(s) | 809 |
| BfuI | GTATCC | 1 cut(s) | 359 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 195 |
| Bme1390I | CCNGG | 9 cut(s) | 66, 235, 277, 554, 888, 971, 1152, 1279, 1406 |
| Bme18I | GGWCC | 4 cut(s) | 738, 890, 1036, 1395 |
| BmrFI | CCNGG | 9 cut(s) | 66, 235, 277, 554, 888, 971, 1152, 1279, 1406 |
| BmrI | ACTGGG | 1 cut(s) | 1203 |
| BmsI | GCATC | 4 cut(s) | 490, 794, 844, 1312 |
| BmuI | ACTGGG | 1 cut(s) | 1203 |
| BpiI | GAAGAC | 2 cut(s) | 378, 963 |
| BpmI | CTGGAG | 1 cut(s) | 507 |
| Bpu10I | CCTNAGC | 4 cut(s) | 330, 558, 1098, 1287 |
| BpuEI | CTTGAG | 1 cut(s) | 1466 |
| BpuMI | CCSGG | 3 cut(s) | 66, 277, 1152 |
| Bsa29I | ATCGAT | 1 cut(s) | 951 |
| BsaHI | GRCGYC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 2 cut(s) | 345, 810 |
| BsaWI | WCCGGW | 1 cut(s) | 874 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 993, 1023 |
| Bse118I | RCCGGY | 1 cut(s) | 735 |
| Bse1I | ACTGG | 4 cut(s) | 380, 649, 1119, 1198 |
| Bse21I | CCTNAGG | 1 cut(s) | 1053 |
| BseBI | CCWGG | 6 cut(s) | 235, 554, 888, 971, 1279, 1406 |
| BseCI | ATCGAT | 1 cut(s) | 951 |
| BseDI | CCNNGG | 2 cut(s) | 345, 810 |
| BseGI | GGATG | 3 cut(s) | 201, 421, 505 |
| BseNI | ACTGG | 4 cut(s) | 380, 649, 1119, 1198 |
| BseRI | GAGGAG | 2 cut(s) | 63, 510 |
| BseSI | GKGCMC | 1 cut(s) | 270 |
| BseX3I | CGGCCG | 1 cut(s) | 768 |
| BseYI | CCCAGC | 2 cut(s) | 513, 637 |
| BsgI | GTGCAG | 1 cut(s) | 899 |
| Bsh1236I | CGCG | 9 cut(s) | 90, 113, 305, 541, 579, 621, 677, 1310, 1332 |
| Bsh1285I | CGRYCG | 1 cut(s) | 771 |
| BshNI | GGYRCC | 1 cut(s) | 211 |
| BshVI | ATCGAT | 1 cut(s) | 951 |
| BsiEI | CGRYCG | 1 cut(s) | 771 |
| BsiHKAI | GWGCWC | 1 cut(s) | 73 |
| BsiSI | CCGG | 5 cut(s) | 66, 276, 736, 875, 1152 |
| BslFI | GGGAC | 2 cut(s) | 1022, 1210 |
| BsmAI | GTCTC | 1 cut(s) | 1359 |
| BsmFI | GGGAC | 2 cut(s) | 1022, 1210 |
| BsmI | GAATGC | 1 cut(s) | 1018 |
| Bsp120I | GGGCCC | 1 cut(s) | 266 |
| Bsp1286I | GDGCHC | 6 cut(s) | 73, 270, 331, 547, 585, 684 |
| Bsp143I | GATC | 9 cut(s) | 85, 114, 135, 313, 672, 934, 966, 1353, 1374 |
| Bsp68I | TCGCGA | 1 cut(s) | 1332 |
| BspACI | CCGC | 8 cut(s) | 106, 412, 577, 677, 771, 1034, 1372, 1430 |
| BspDI | ATCGAT | 1 cut(s) | 951 |
| BspFNI | CGCG | 9 cut(s) | 90, 113, 305, 541, 579, 621, 677, 1310, 1332 |
| BspPI | GGATC | 5 cut(s) | 143, 929, 961, 1348, 1382 |
| BspQI | GCTCTTC | 1 cut(s) | 769 |
| BspT107I | GGYRCC | 1 cut(s) | 211 |
| BsrFI | RCCGGY | 1 cut(s) | 735 |
| BsrI | ACTGG | 4 cut(s) | 380, 649, 1119, 1198 |
| BssAI | RCCGGY | 1 cut(s) | 735 |
| BssECI | CCNNGG | 2 cut(s) | 345, 810 |
| BssMI | GATC | 9 cut(s) | 85, 114, 135, 313, 672, 934, 966, 1353, 1374 |
| BssNI | GRCGYC | 1 cut(s) | 231 |
| Bst2UI | CCWGG | 6 cut(s) | 235, 554, 888, 971, 1279, 1406 |
| Bst4CI | ACNGT | 3 cut(s) | 83, 670, 727 |
| Bst6I | CTCTTC | 1 cut(s) | 769 |
| BstACI | GRCGYC | 1 cut(s) | 231 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 629, 911 |
| BstDSI | CCRYGG | 2 cut(s) | 345, 810 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 590 |
| BstF5I | GGATG | 3 cut(s) | 201, 421, 505 |
| BstFNI | CGCG | 9 cut(s) | 90, 113, 305, 541, 579, 621, 677, 1310, 1332 |
| BstH2I | RGCGCY | 1 cut(s) | 809 |
| BstHHI | GCGC | 8 cut(s) | 96, 113, 307, 541, 623, 808, 1273, 1312 |
| BstKTI | GATC | 9 cut(s) | 88, 117, 138, 316, 675, 937, 969, 1356, 1377 |
| BstMAI | GTCTC | 1 cut(s) | 1359 |
| BstMBI | GATC | 9 cut(s) | 85, 114, 135, 313, 672, 934, 966, 1353, 1374 |
| BstMCI | CGRYCG | 1 cut(s) | 771 |
| BstNI | CCWGG | 6 cut(s) | 235, 554, 888, 971, 1279, 1406 |
| BstSCI | CCNGG | 9 cut(s) | 64, 233, 275, 552, 886, 969, 1150, 1277, 1404 |
| BstSFI | CTRYAG | 2 cut(s) | 79, 1226 |
| BstSLI | GKGCMC | 1 cut(s) | 270 |
| BstUI | CGCG | 9 cut(s) | 90, 113, 305, 541, 579, 621, 677, 1310, 1332 |
| BstV2I | GAAGAC | 2 cut(s) | 378, 963 |
| BstZI | CGGCCG | 1 cut(s) | 768 |
| Bsu15I | ATCGAT | 1 cut(s) | 951 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1053 |
| BsuI | GTATCC | 1 cut(s) | 359 |
| BsuTUI | ATCGAT | 1 cut(s) | 951 |
| BtgI | CCRYGG | 2 cut(s) | 345, 810 |
| BtgZI | GCGATG | 1 cut(s) | 867 |
| BtsCI | GGATG | 3 cut(s) | 201, 421, 505 |
| BtsI | GCAGTG | 2 cut(s) | 843, 1091 |
| BtsIMutI | CAGTG | 4 cut(s) | 88, 843, 1091, 1191 |
| BtuMI | TCGCGA | 1 cut(s) | 1332 |
| CaiI | CAGNNNCTG | 1 cut(s) | 644 |
| CfoI | GCGC | 8 cut(s) | 96, 113, 307, 541, 623, 808, 1273, 1312 |
| Cfr10I | RCCGGY | 1 cut(s) | 735 |
| ClaI | ATCGAT | 1 cut(s) | 951 |
| CseI | GACGC | 1 cut(s) | 239 |
| Csp6I | GTAC | 2 cut(s) | 226, 923 |
| CviAII | CATG | 5 cut(s) | 961, 986, 1064, 1378, 1451 |
| CviQI | GTAC | 2 cut(s) | 226, 923 |
| DpnI | GATC | 9 cut(s) | 87, 116, 137, 315, 674, 936, 968, 1355, 1376 |
| DpnII | GATC | 9 cut(s) | 85, 114, 135, 313, 672, 934, 966, 1353, 1374 |
| EaeI | YGGCCR | 2 cut(s) | 646, 768 |
| EagI | CGGCCG | 1 cut(s) | 768 |
| Eam1104I | CTCTTC | 1 cut(s) | 769 |
| EarI | CTCTTC | 1 cut(s) | 769 |
| EclXI | CGGCCG | 1 cut(s) | 768 |
| Eco24I | GRGCYC | 5 cut(s) | 270, 331, 547, 585, 684 |
| Eco32I | GATATC | 1 cut(s) | 130 |
| Eco47I | GGWCC | 4 cut(s) | 738, 890, 1036, 1395 |
| Eco52I | CGGCCG | 1 cut(s) | 768 |
| Eco57I | CTGAAG | 2 cut(s) | 165, 1014 |
| Eco81I | CCTNAGG | 1 cut(s) | 1053 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 590 |
| EcoO109I | RGGNCCY | 2 cut(s) | 267, 1303 |
| EcoRII | CCWGG | 6 cut(s) | 233, 552, 886, 969, 1277, 1404 |
| EcoRV | GATATC | 1 cut(s) | 130 |
| EcoT38I | GRGCYC | 5 cut(s) | 270, 331, 547, 585, 684 |
| FaeI | CATG | 5 cut(s) | 964, 989, 1067, 1381, 1454 |
| FaqI | GGGAC | 2 cut(s) | 1022, 1210 |
| FatI | CATG | 5 cut(s) | 960, 985, 1063, 1377, 1450 |
| FauI | CCCGC | 1 cut(s) | 405 |
| FokI | GGATG | 3 cut(s) | 188, 428, 512 |
| FriOI | GRGCYC | 5 cut(s) | 270, 331, 547, 585, 684 |
| FspBI | CTAG | 3 cut(s) | 654, 819, 1466 |
| FspI | TGCGCA | 1 cut(s) | 1272 |
| GlaI | GCGC | 8 cut(s) | 95, 112, 306, 540, 622, 807, 1272, 1311 |
| GsaI | CCCAGC | 2 cut(s) | 517, 641 |
| GsuI | CTGGAG | 1 cut(s) | 507 |
| HaeII | RGCGCY | 1 cut(s) | 809 |
| HapII | CCGG | 5 cut(s) | 66, 276, 736, 875, 1152 |
| HgaI | GACGC | 1 cut(s) | 239 |
| HhaI | GCGC | 8 cut(s) | 96, 113, 307, 541, 623, 808, 1273, 1312 |
| Hin1I | GRCGYC | 1 cut(s) | 231 |
| Hin1II | CATG | 5 cut(s) | 964, 989, 1067, 1381, 1454 |
| Hin6I | GCGC | 8 cut(s) | 94, 111, 305, 539, 621, 806, 1271, 1310 |
| HinP1I | GCGC | 8 cut(s) | 94, 111, 305, 539, 621, 806, 1271, 1310 |
| HinfI | GANTC | 8 cut(s) | 33, 261, 341, 406, 695, 815, 883, 1231 |
| HpaII | CCGG | 5 cut(s) | 66, 276, 736, 875, 1152 |
| HphI | GGTGA | 8 cut(s) | 542, 682, 788, 976, 1021, 1198, 1379, 1444 |
| Hpy166II | GTNNAC | 3 cut(s) | 349, 1206, 1245 |
| Hpy188I | TCNGA | 4 cut(s) | 127, 496, 706, 1395 |
| Hpy8I | GTNNAC | 3 cut(s) | 349, 1206, 1245 |
| Hpy99I | CGWCG | 3 cut(s) | 233, 713, 735 |
| HpyAV | CCTTC | 8 cut(s) | 71, 356, 596, 752, 773, 998, 1116, 1400 |
| HpyCH4III | ACNGT | 3 cut(s) | 83, 670, 727 |
| HpyCH4V | TGCA | 6 cut(s) | 431, 467, 721, 857, 880, 1381 |
| Hsp92I | GRCGYC | 1 cut(s) | 231 |
| Hsp92II | CATG | 5 cut(s) | 964, 989, 1067, 1381, 1454 |
| HspAI | GCGC | 8 cut(s) | 94, 111, 305, 539, 621, 806, 1271, 1310 |
| Kzo9I | GATC | 9 cut(s) | 85, 114, 135, 313, 672, 934, 966, 1353, 1374 |
| LguI | GCTCTTC | 1 cut(s) | 769 |
| LmnI | GCTCC | 7 cut(s) | 76, 175, 679, 973, 994, 1087, 1093 |
| LweI | GCATC | 4 cut(s) | 490, 794, 844, 1312 |
| MaeI | CTAG | 3 cut(s) | 654, 819, 1466 |
| MaeIII | GTNAC | 2 cut(s) | 155, 1432 |
| MalI | GATC | 9 cut(s) | 87, 116, 137, 315, 674, 936, 968, 1355, 1376 |
| MboI | GATC | 9 cut(s) | 85, 114, 135, 313, 672, 934, 966, 1353, 1374 |
| MboII | GAAGA | 9 cut(s) | 42, 158, 308, 383, 690, 756, 818, 968, 1226 |
| MfeI | CAATTG | 4 cut(s) | 206, 397, 860, 1421 |
| MhlI | GDGCHC | 6 cut(s) | 73, 270, 331, 547, 585, 684 |
| MlsI | TGGCCA | 1 cut(s) | 648 |
| MluCI | AATT | 7 cut(s) | 191, 206, 397, 624, 860, 870, 1421 |
| MluNI | TGGCCA | 1 cut(s) | 648 |
| MlyI | GAGTC | 3 cut(s) | 335, 400, 892 |
| Mox20I | TGGCCA | 1 cut(s) | 648 |
| MscI | TGGCCA | 1 cut(s) | 648 |
| Msp20I | TGGCCA | 1 cut(s) | 648 |
| MspA1I | CMGCKG | 4 cut(s) | 108, 412, 641, 773 |
| MspI | CCGG | 5 cut(s) | 66, 276, 736, 875, 1152 |
| MspR9I | CCNGG | 9 cut(s) | 66, 235, 277, 554, 888, 971, 1152, 1279, 1406 |
| MunI | CAATTG | 4 cut(s) | 206, 397, 860, 1421 |
| Mva1269I | GAATGC | 1 cut(s) | 1018 |
| MvaI | CCWGG | 6 cut(s) | 235, 554, 888, 971, 1279, 1406 |
| MvnI | CGCG | 9 cut(s) | 90, 113, 305, 541, 579, 621, 677, 1310, 1332 |
| NciI | CCSGG | 3 cut(s) | 66, 277, 1152 |
| NdeII | GATC | 9 cut(s) | 85, 114, 135, 313, 672, 934, 966, 1353, 1374 |
| NlaIII | CATG | 5 cut(s) | 964, 989, 1067, 1381, 1454 |
| NmuCI | GTSAC | 1 cut(s) | 1432 |
| NruI | TCGCGA | 1 cut(s) | 1332 |
| NsbI | TGCGCA | 1 cut(s) | 1272 |
| PciSI | GCTCTTC | 1 cut(s) | 769 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 625, 681, 1180 |
| PctI | GAATGC | 1 cut(s) | 1018 |
| PfeI | GAWTC | 5 cut(s) | 33, 261, 695, 815, 1231 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 644 |
| PfoI | TCCNGGA | 2 cut(s) | 969, 1404 |
| PleI | GAGTC | 3 cut(s) | 335, 400, 891 |
| PpsI | GAGTC | 3 cut(s) | 335, 400, 891 |
| Psp6I | CCWGG | 6 cut(s) | 233, 552, 886, 969, 1277, 1404 |
| PspFI | CCCAGC | 2 cut(s) | 513, 637 |
| PspGI | CCWGG | 6 cut(s) | 233, 552, 886, 969, 1277, 1404 |
| PspOMI | GGGCCC | 1 cut(s) | 266 |
| PstNI | CAGNNNCTG | 1 cut(s) | 644 |
| PvuII | CAGCTG | 1 cut(s) | 641 |
| RruI | TCGCGA | 1 cut(s) | 1332 |
| RsaI | GTAC | 2 cut(s) | 227, 924 |
| RsaNI | GTAC | 2 cut(s) | 226, 923 |
| SapI | GCTCTTC | 1 cut(s) | 769 |
| Sau3AI | GATC | 9 cut(s) | 85, 114, 135, 313, 672, 934, 966, 1353, 1374 |
| SchI | GAGTC | 3 cut(s) | 335, 400, 892 |
| ScrFI | CCNGG | 9 cut(s) | 66, 235, 277, 554, 888, 971, 1152, 1279, 1406 |
| SduI | GDGCHC | 6 cut(s) | 73, 270, 331, 547, 585, 684 |
| SfaNI | GCATC | 4 cut(s) | 490, 794, 844, 1312 |
| SfcI | CTRYAG | 2 cut(s) | 79, 1226 |
| SinI | GGWCC | 4 cut(s) | 738, 890, 1036, 1395 |
| SmlI | CTYRAG | 1 cut(s) | 1445 |
| SmoI | CTYRAG | 1 cut(s) | 1445 |
| Sse9I | AATT | 7 cut(s) | 191, 206, 397, 624, 860, 870, 1421 |
| SsiI | CCGC | 8 cut(s) | 106, 412, 577, 677, 771, 1034, 1372, 1430 |
| SspI | AATATT | 1 cut(s) | 21 |
| SspMI | CTAG | 3 cut(s) | 654, 819, 1466 |
| StyD4I | CCNGG | 9 cut(s) | 64, 233, 275, 552, 886, 969, 1150, 1277, 1404 |
| TaaI | ACNGT | 3 cut(s) | 83, 670, 727 |
| TaqI | TCGA | 3 cut(s) | 339, 951, 1137 |
| TasI | AATT | 7 cut(s) | 191, 206, 397, 624, 860, 870, 1421 |
| TauI | GCSGC | 1 cut(s) | 773 |
| TfiI | GAWTC | 5 cut(s) | 33, 261, 695, 815, 1231 |
| TscAI | CASTG | 4 cut(s) | 88, 850, 1098, 1198 |
| TseFI | GTSAC | 1 cut(s) | 1432 |
| Tsp45I | GTSAC | 1 cut(s) | 1432 |
| TspDTI | ATGAA | 2 cut(s) | 969, 1266 |
| TspGWI | ACGGA | 3 cut(s) | 334, 382, 827 |
| TspRI | CASTG | 4 cut(s) | 88, 850, 1098, 1198 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 644 |
| VpaK11BI | GGWCC | 4 cut(s) | 738, 890, 1036, 1395 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 590 |
| XbaI | TCTAGA | 1 cut(s) | 653 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 560 |
| XspI | CTAG | 3 cut(s) | 654, 819, 1466 |