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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 366 |
| AccII | CGCG | 2 cut(s) | 205, 214 |
| AciI | CCGC | 5 cut(s) | 162, 194, 212, 376, 384 |
| AcoI | YGGCCR | 1 cut(s) | 224 |
| AcyI | GRCGYC | 2 cut(s) | 159, 367 |
| AfaI | GTAC | 1 cut(s) | 361 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 11 |
| AgsI | TTSAA | 1 cut(s) | 431 |
| AluBI | AGCT | 2 cut(s) | 136, 247 |
| AluI | AGCT | 2 cut(s) | 136, 247 |
| Alw21I | GWGCWC | 2 cut(s) | 249, 261 |
| Alw26I | GTCTC | 1 cut(s) | 58 |
| Ama87I | CYCGRG | 2 cut(s) | 182, 252 |
| AoxI | GGCC | 1 cut(s) | 224 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 68, 100 |
| AspLEI | GCGC | 3 cut(s) | 205, 216, 369 |
| AspS9I | GGNCC | 2 cut(s) | 14, 327 |
| AsuC2I | CCSGG | 2 cut(s) | 223, 228 |
| AsuHPI | GGTGA | 1 cut(s) | 401 |
| AvaI | CYCGRG | 2 cut(s) | 182, 252 |
| AvaII | GGWCC | 2 cut(s) | 14, 327 |
| BaeGI | GKGCMC | 1 cut(s) | 223 |
| BanI | GGYRCC | 1 cut(s) | 366 |
| BanII | GRGCYC | 2 cut(s) | 211, 249 |
| BbsI | GAAGAC | 1 cut(s) | 162 |
| Bbv12I | GWGCWC | 2 cut(s) | 249, 261 |
| BccI | CCATC | 1 cut(s) | 4 |
| BceAI | ACGGC | 3 cut(s) | 201, 330, 336 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 153, 187 |
| BcnI | CCSGG | 2 cut(s) | 223, 228 |
| BcoDI | GTCTC | 1 cut(s) | 58 |
| BfaI | CTAG | 1 cut(s) | 407 |
| BfoI | RGCGCY | 1 cut(s) | 370 |
| BisI | GCNGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 1 cut(s) | 163 |
| BmcAI | AGTACT | 1 cut(s) | 361 |
| Bme1390I | CCNGG | 2 cut(s) | 223, 228 |
| Bme18I | GGWCC | 2 cut(s) | 14, 327 |
| BmeT110I | CYCGRG | 2 cut(s) | 182, 252 |
| BmgT120I | GGNCC | 2 cut(s) | 14, 327 |
| BmiI | GGNNCC | 5 cut(s) | 15, 105, 192, 329, 368 |
| BmrFI | CCNGG | 2 cut(s) | 223, 228 |
| BmsI | GCATC | 1 cut(s) | 102 |
| BpiI | GAAGAC | 1 cut(s) | 162 |
| BpuMI | CCSGG | 2 cut(s) | 223, 228 |
| BsaHI | GRCGYC | 2 cut(s) | 159, 367 |
| BsaJI | CCNNGG | 2 cut(s) | 5, 352 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 11 |
| Bse118I | RCCGGY | 3 cut(s) | 187, 199, 386 |
| BseDI | CCNNGG | 2 cut(s) | 5, 352 |
| BseGI | GGATG | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 11 |
| BseRI | GAGGAG | 1 cut(s) | 168 |
| BseSI | GKGCMC | 1 cut(s) | 223 |
| BseX3I | CGGCCG | 1 cut(s) | 224 |
| Bsh1236I | CGCG | 2 cut(s) | 205, 214 |
| Bsh1285I | CGRYCG | 1 cut(s) | 227 |
| BshFI | GGCC | 1 cut(s) | 226 |
| BshNI | GGYRCC | 1 cut(s) | 366 |
| BsiEI | CGRYCG | 1 cut(s) | 227 |
| BsiHKAI | GWGCWC | 2 cut(s) | 249, 261 |
| BsiHKCI | CYCGRG | 2 cut(s) | 182, 252 |
| BsiSI | CCGG | 5 cut(s) | 188, 200, 223, 227, 387 |
| BslFI | GGGAC | 3 cut(s) | 27, 251, 313 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 11 |
| BsmAI | GTCTC | 1 cut(s) | 58 |
| BsmFI | GGGAC | 3 cut(s) | 27, 251, 313 |
| BsmI | GAATGC | 1 cut(s) | 292 |
| BsnI | GGCC | 1 cut(s) | 226 |
| BsoBI | CYCGRG | 2 cut(s) | 182, 252 |
| Bsp1286I | GDGCHC | 4 cut(s) | 211, 223, 249, 261 |
| BspACI | CCGC | 5 cut(s) | 162, 194, 212, 376, 384 |
| BspANI | GGCC | 1 cut(s) | 226 |
| BspFNI | CGCG | 2 cut(s) | 205, 214 |
| BspLI | GGNNCC | 5 cut(s) | 15, 105, 192, 329, 368 |
| BspT107I | GGYRCC | 1 cut(s) | 366 |
| BsrFI | RCCGGY | 3 cut(s) | 187, 199, 386 |
| BssAI | RCCGGY | 3 cut(s) | 187, 199, 386 |
| BssECI | CCNNGG | 2 cut(s) | 5, 352 |
| BssNI | GRCGYC | 2 cut(s) | 159, 367 |
| Bst4CI | ACNGT | 1 cut(s) | 72 |
| Bst6I | CTCTTC | 2 cut(s) | 89, 434 |
| BstACI | GRCGYC | 2 cut(s) | 159, 367 |
| BstC8I | GCNNGC | 6 cut(s) | 91, 145, 189, 207, 245, 414 |
| BstDSI | CCRYGG | 2 cut(s) | 5, 352 |
| BstF5I | GGATG | 1 cut(s) | 15 |
| BstFNI | CGCG | 2 cut(s) | 205, 214 |
| BstH2I | RGCGCY | 1 cut(s) | 370 |
| BstHHI | GCGC | 3 cut(s) | 205, 216, 369 |
| BstMAI | GTCTC | 1 cut(s) | 58 |
| BstMCI | CGRYCG | 1 cut(s) | 227 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 193, 202, 211, 375, 422, 431 |
| BstSCI | CCNGG | 2 cut(s) | 221, 226 |
| BstSLI | GKGCMC | 1 cut(s) | 223 |
| BstUI | CGCG | 2 cut(s) | 205, 214 |
| BstV2I | GAAGAC | 1 cut(s) | 162 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 324 |
| BstZI | CGGCCG | 1 cut(s) | 224 |
| BsuRI | GGCC | 1 cut(s) | 226 |
| BtgI | CCRYGG | 2 cut(s) | 5, 352 |
| BtsCI | GGATG | 1 cut(s) | 15 |
| Cac8I | GCNNGC | 6 cut(s) | 91, 145, 189, 207, 245, 414 |
| CfoI | GCGC | 3 cut(s) | 205, 216, 369 |
| Cfr10I | RCCGGY | 3 cut(s) | 187, 199, 386 |
| Cfr13I | GGNCC | 2 cut(s) | 14, 327 |
| CseI | GACGC | 1 cut(s) | 167 |
| Csp6I | GTAC | 1 cut(s) | 360 |
| CviAII | CATG | 1 cut(s) | 422 |
| CviJI | RGCY | 8 cut(s) | 136, 187, 191, 209, 226, 247, 345, 412 |
| CviKI_1 | RGCY | 8 cut(s) | 136, 187, 191, 209, 226, 247, 345, 412 |
| CviQI | GTAC | 1 cut(s) | 360 |
| DinI | GGCGCC | 1 cut(s) | 368 |
| EaeI | YGGCCR | 1 cut(s) | 224 |
| EagI | CGGCCG | 1 cut(s) | 224 |
| Eam1104I | CTCTTC | 2 cut(s) | 89, 434 |
| EarI | CTCTTC | 2 cut(s) | 89, 434 |
| Ecl136II | GAGCTC | 1 cut(s) | 247 |
| EclXI | CGGCCG | 1 cut(s) | 224 |
| Eco24I | GRGCYC | 2 cut(s) | 211, 249 |
| Eco32I | GATATC | 1 cut(s) | 113 |
| Eco47I | GGWCC | 2 cut(s) | 14, 327 |
| Eco52I | CGGCCG | 1 cut(s) | 224 |
| Eco53kI | GAGCTC | 1 cut(s) | 247 |
| Eco88I | CYCGRG | 2 cut(s) | 182, 252 |
| EcoICRI | GAGCTC | 1 cut(s) | 247 |
| EcoRV | GATATC | 1 cut(s) | 113 |
| EcoT38I | GRGCYC | 2 cut(s) | 211, 249 |
| EgeI | GGCGCC | 1 cut(s) | 368 |
| EheI | GGCGCC | 1 cut(s) | 368 |
| FaeI | CATG | 1 cut(s) | 425 |
| FaiI | YATR | 4 cut(s) | 29, 75, 233, 423 |
| FaqI | GGGAC | 3 cut(s) | 27, 251, 313 |
| FatI | CATG | 1 cut(s) | 421 |
| FauI | CCCGC | 3 cut(s) | 219, 383, 391 |
| Fnu4HI | GCNGC | 1 cut(s) | 162 |
| FokI | GGATG | 1 cut(s) | 22 |
| FriOI | GRGCYC | 2 cut(s) | 211, 249 |
| Fsp4HI | GCNGC | 1 cut(s) | 162 |
| FspBI | CTAG | 1 cut(s) | 407 |
| GlaI | GCGC | 3 cut(s) | 204, 215, 368 |
| GluI | GCNGC | 1 cut(s) | 162 |
| HaeII | RGCGCY | 1 cut(s) | 370 |
| HaeIII | GGCC | 1 cut(s) | 226 |
| HapII | CCGG | 5 cut(s) | 188, 200, 223, 227, 387 |
| HgaI | GACGC | 1 cut(s) | 167 |
| HhaI | GCGC | 3 cut(s) | 205, 216, 369 |
| Hin1I | GRCGYC | 2 cut(s) | 159, 367 |
| Hin1II | CATG | 1 cut(s) | 425 |
| Hin6I | GCGC | 3 cut(s) | 203, 214, 367 |
| HinP1I | GCGC | 3 cut(s) | 203, 214, 367 |
| HincII | GTYRAC | 1 cut(s) | 403 |
| HindII | GTYRAC | 1 cut(s) | 403 |
| HinfI | GANTC | 3 cut(s) | 271, 302, 320 |
| HpaI | GTTAAC | 1 cut(s) | 403 |
| HpaII | CCGG | 5 cut(s) | 188, 200, 223, 227, 387 |
| HphI | GGTGA | 1 cut(s) | 401 |
| Hpy166II | GTNNAC | 2 cut(s) | 41, 403 |
| Hpy188I | TCNGA | 1 cut(s) | 63 |
| Hpy188III | TCNNGA | 5 cut(s) | 152, 182, 254, 268, 428 |
| Hpy8I | GTNNAC | 2 cut(s) | 41, 403 |
| Hpy99I | CGWCG | 1 cut(s) | 351 |
| HpyAV | CCTTC | 1 cut(s) | 16 |
| HpyCH4III | ACNGT | 1 cut(s) | 72 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 193, 202, 211, 375, 422, 431 |
| Hsp92I | GRCGYC | 2 cut(s) | 159, 367 |
| Hsp92II | CATG | 1 cut(s) | 425 |
| HspAI | GCGC | 3 cut(s) | 203, 214, 367 |
| KasI | GGCGCC | 1 cut(s) | 366 |
| KroI | GCCGGC | 1 cut(s) | 187 |
| KroNI | GCCGGC | 1 cut(s) | 189 |
| KspAI | GTTAAC | 1 cut(s) | 403 |
| LmnI | GCTCC | 2 cut(s) | 196, 252 |
| LpnPI | CCDG | 7 cut(s) | 201, 213, 236, 240, 330, 400, 426 |
| LweI | GCATC | 1 cut(s) | 102 |
| MaeI | CTAG | 1 cut(s) | 407 |
| MboII | GAAGA | 5 cut(s) | 31, 76, 162, 167, 404 |
| MfeI | CAATTG | 1 cut(s) | 55 |
| MhlI | GDGCHC | 4 cut(s) | 211, 223, 249, 261 |
| MluCI | AATT | 2 cut(s) | 55, 237 |
| Mly113I | GGCGCC | 1 cut(s) | 367 |
| MmeI | TCCRAC | 1 cut(s) | 41 |
| MnlI | CCTC | 6 cut(s) | 24, 186, 189, 261, 316, 435 |
| MroNI | GCCGGC | 1 cut(s) | 187 |
| MseI | TTAA | 2 cut(s) | 311, 402 |
| MslI | CAYNNNNRTG | 1 cut(s) | 297 |
| MspI | CCGG | 5 cut(s) | 188, 200, 223, 227, 387 |
| MspR9I | CCNGG | 2 cut(s) | 223, 228 |
| MunI | CAATTG | 1 cut(s) | 55 |
| Mva1269I | GAATGC | 1 cut(s) | 292 |
| MvnI | CGCG | 2 cut(s) | 205, 214 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 193, 202, 211, 375, 422, 431 |
| NaeI | GCCGGC | 1 cut(s) | 189 |
| NarI | GGCGCC | 1 cut(s) | 367 |
| NciI | CCSGG | 2 cut(s) | 223, 228 |
| NgoMIV | GCCGGC | 1 cut(s) | 187 |
| NlaIII | CATG | 1 cut(s) | 425 |
| NlaIV | GGNNCC | 5 cut(s) | 15, 105, 192, 329, 368 |
| PaeR7I | CTCGAG | 1 cut(s) | 252 |
| PctI | GAATGC | 1 cut(s) | 292 |
| PdiI | GCCGGC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 271, 302, 320 |
| PkrI | GCNGC | 1 cut(s) | 163 |
| PluTI | GGCGCC | 1 cut(s) | 370 |
| Psp124BI | GAGCTC | 1 cut(s) | 249 |
| PspN4I | GGNNCC | 5 cut(s) | 15, 105, 192, 329, 368 |
| PspPI | GGNCC | 2 cut(s) | 14, 327 |
| RsaI | GTAC | 1 cut(s) | 361 |
| RsaNI | GTAC | 1 cut(s) | 360 |
| RseI | CAYNNNNRTG | 1 cut(s) | 297 |
| SacI | GAGCTC | 1 cut(s) | 249 |
| SaqAI | TTAA | 2 cut(s) | 311, 402 |
| SatI | GCNGC | 1 cut(s) | 162 |
| Sau96I | GGNCC | 2 cut(s) | 14, 327 |
| ScaI | AGTACT | 1 cut(s) | 361 |
| ScrFI | CCNGG | 2 cut(s) | 223, 228 |
| SduI | GDGCHC | 4 cut(s) | 211, 223, 249, 261 |
| SetI | ASST | 4 cut(s) | 138, 249, 408, 446 |
| SfaNI | GCATC | 1 cut(s) | 102 |
| SfoI | GGCGCC | 1 cut(s) | 368 |
| Sfr274I | CTCGAG | 1 cut(s) | 252 |
| SgrAI | CRCCGGYG | 1 cut(s) | 386 |
| SinI | GGWCC | 2 cut(s) | 14, 327 |
| SlaI | CTCGAG | 1 cut(s) | 252 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 297 |
| SmlI | CTYRAG | 1 cut(s) | 252 |
| SmoI | CTYRAG | 1 cut(s) | 252 |
| Sse9I | AATT | 2 cut(s) | 55, 237 |
| SsiI | CCGC | 5 cut(s) | 162, 194, 212, 376, 384 |
| SspDI | GGCGCC | 1 cut(s) | 366 |
| SspMI | CTAG | 1 cut(s) | 407 |
| SstI | GAGCTC | 1 cut(s) | 249 |
| StyD4I | CCNGG | 2 cut(s) | 221, 226 |
| TaaI | ACNGT | 1 cut(s) | 72 |
| TaqI | TCGA | 1 cut(s) | 253 |
| TaqII | GACCGA | 1 cut(s) | 31 |
| TasI | AATT | 2 cut(s) | 55, 237 |
| TatI | WGTACW | 1 cut(s) | 359 |
| TauI | GCSGC | 1 cut(s) | 164 |
| TfiI | GAWTC | 3 cut(s) | 271, 302, 320 |
| Tru1I | TTAA | 2 cut(s) | 311, 402 |
| Tru9I | TTAA | 2 cut(s) | 311, 402 |
| VpaK11BI | GGWCC | 2 cut(s) | 14, 327 |
| XhoI | CTCGAG | 1 cut(s) | 252 |
| XspI | CTAG | 1 cut(s) | 407 |
| ZrmI | AGTACT | 1 cut(s) | 361 |