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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 328 |
| AccB1I | GGYRCC | 4 cut(s) | 81, 265, 292, 328 |
| AccII | CGCG | 7 cut(s) | 166, 312, 314, 334, 369, 413, 415 |
| AccIII | TCCGGA | 1 cut(s) | 109 |
| AcoI | YGGCCR | 4 cut(s) | 297, 359, 437, 489 |
| AfaI | GTAC | 1 cut(s) | 330 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 65, 215, 368, 417 |
| AgsI | TTSAA | 1 cut(s) | 255 |
| AluBI | AGCT | 1 cut(s) | 322 |
| AluI | AGCT | 1 cut(s) | 322 |
| Alw26I | GTCTC | 3 cut(s) | 107, 162, 380 |
| Aor13HI | TCCGGA | 1 cut(s) | 109 |
| AoxI | GGCC | 5 cut(s) | 217, 297, 359, 437, 489 |
| Asp718I | GGTACC | 1 cut(s) | 328 |
| AspLEI | GCGC | 3 cut(s) | 57, 314, 415 |
| AspS9I | GGNCC | 4 cut(s) | 150, 156, 218, 228 |
| AsuC2I | CCSGG | 1 cut(s) | 154 |
| AsuHPI | GGTGA | 2 cut(s) | 183, 421 |
| AvaII | GGWCC | 3 cut(s) | 150, 156, 228 |
| BaeGI | GKGCMC | 3 cut(s) | 86, 270, 295 |
| BalI | TGGCCA | 1 cut(s) | 491 |
| BanI | GGYRCC | 4 cut(s) | 81, 265, 292, 328 |
| BbsI | GAAGAC | 1 cut(s) | 399 |
| BccI | CCATC | 3 cut(s) | 148, 196, 308 |
| BcnI | CCSGG | 1 cut(s) | 154 |
| BcoDI | GTCTC | 3 cut(s) | 107, 162, 380 |
| BfoI | RGCGCY | 1 cut(s) | 58 |
| BisI | GCNGC | 4 cut(s) | 164, 315, 370, 440 |
| BlsI | GCNGC | 4 cut(s) | 165, 316, 371, 441 |
| Bme1390I | CCNGG | 1 cut(s) | 154 |
| Bme18I | GGWCC | 3 cut(s) | 150, 156, 228 |
| BmgT120I | GGNCC | 4 cut(s) | 150, 156, 218, 228 |
| BmiI | GGNNCC | 7 cut(s) | 6, 71, 83, 157, 267, 294, 330 |
| BmrFI | CCNGG | 1 cut(s) | 154 |
| BpiI | GAAGAC | 1 cut(s) | 399 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 340, 372 |
| BpuMI | CCSGG | 1 cut(s) | 154 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaI | GGTCTC | 1 cut(s) | 107 |
| BsaWI | WCCGGW | 2 cut(s) | 109, 225 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 106, 136 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 65, 215, 368, 417 |
| Bse118I | RCCGGY | 1 cut(s) | 295 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseAI | TCCGGA | 1 cut(s) | 109 |
| BseGI | GGATG | 1 cut(s) | 300 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 65, 215, 368, 417 |
| BseRI | GAGGAG | 1 cut(s) | 114 |
| BseSI | GKGCMC | 3 cut(s) | 86, 270, 295 |
| BseX3I | CGGCCG | 2 cut(s) | 359, 437 |
| Bsh1236I | CGCG | 7 cut(s) | 166, 312, 314, 334, 369, 413, 415 |
| Bsh1285I | CGRYCG | 2 cut(s) | 362, 440 |
| BshFI | GGCC | 5 cut(s) | 219, 299, 361, 439, 491 |
| BshNI | GGYRCC | 4 cut(s) | 81, 265, 292, 328 |
| BsiEI | CGRYCG | 2 cut(s) | 362, 440 |
| BsiSI | CCGG | 5 cut(s) | 110, 153, 226, 296, 362 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 65, 215, 368, 417 |
| BsmAI | GTCTC | 3 cut(s) | 107, 162, 380 |
| BsmI | GAATGC | 1 cut(s) | 88 |
| BsnI | GGCC | 5 cut(s) | 219, 299, 361, 439, 491 |
| Bso31I | GGTCTC | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 3 cut(s) | 86, 270, 295 |
| Bsp13I | TCCGGA | 1 cut(s) | 109 |
| Bsp143I | GATC | 2 cut(s) | 350, 391 |
| BspANI | GGCC | 5 cut(s) | 219, 299, 361, 439, 491 |
| BspEI | TCCGGA | 1 cut(s) | 109 |
| BspFNI | CGCG | 7 cut(s) | 166, 312, 314, 334, 369, 413, 415 |
| BspLI | GGNNCC | 7 cut(s) | 6, 71, 83, 157, 267, 294, 330 |
| BspQI | GCTCTTC | 1 cut(s) | 331 |
| BspT107I | GGYRCC | 4 cut(s) | 81, 265, 292, 328 |
| BspTNI | GGTCTC | 1 cut(s) | 107 |
| BsrFI | RCCGGY | 1 cut(s) | 295 |
| BssAI | RCCGGY | 1 cut(s) | 295 |
| BssMI | GATC | 2 cut(s) | 350, 391 |
| Bst4CI | ACNGT | 1 cut(s) | 259 |
| Bst6I | CTCTTC | 1 cut(s) | 331 |
| BstC8I | GCNNGC | 2 cut(s) | 86, 205 |
| BstF5I | GGATG | 1 cut(s) | 300 |
| BstFNI | CGCG | 7 cut(s) | 166, 312, 314, 334, 369, 413, 415 |
| BstH2I | RGCGCY | 1 cut(s) | 58 |
| BstHHI | GCGC | 3 cut(s) | 57, 314, 415 |
| BstKTI | GATC | 2 cut(s) | 353, 394 |
| BstMAI | GTCTC | 3 cut(s) | 107, 162, 380 |
| BstMBI | GATC | 2 cut(s) | 350, 391 |
| BstMCI | CGRYCG | 2 cut(s) | 362, 440 |
| BstSCI | CCNGG | 1 cut(s) | 152 |
| BstSLI | GKGCMC | 3 cut(s) | 86, 270, 295 |
| BstUI | CGCG | 7 cut(s) | 166, 312, 314, 334, 369, 413, 415 |
| BstV2I | GAAGAC | 1 cut(s) | 399 |
| BstZI | CGGCCG | 2 cut(s) | 359, 437 |
| BsuRI | GGCC | 5 cut(s) | 219, 299, 361, 439, 491 |
| BtsCI | GGATG | 1 cut(s) | 300 |
| Cac8I | GCNNGC | 2 cut(s) | 86, 205 |
| CfoI | GCGC | 3 cut(s) | 57, 314, 415 |
| Cfr10I | RCCGGY | 1 cut(s) | 295 |
| Cfr13I | GGNCC | 4 cut(s) | 150, 156, 218, 228 |
| CpoI | CGGWCCG | 1 cut(s) | 150 |
| Csp6I | GTAC | 1 cut(s) | 329 |
| CspI | CGGWCCG | 1 cut(s) | 150 |
| CviAII | CATG | 1 cut(s) | 144 |
| CviJI | RGCY | 9 cut(s) | 5, 203, 219, 299, 322, 356, 361, 439, 491 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 203, 219, 299, 322, 356, 361, 439, 491 |
| CviQI | GTAC | 1 cut(s) | 329 |
| DpnI | GATC | 2 cut(s) | 352, 393 |
| DpnII | GATC | 2 cut(s) | 350, 391 |
| EaeI | YGGCCR | 4 cut(s) | 297, 359, 437, 489 |
| EagI | CGGCCG | 2 cut(s) | 359, 437 |
| Eam1104I | CTCTTC | 1 cut(s) | 331 |
| EarI | CTCTTC | 1 cut(s) | 331 |
| EciI | GGCGGA | 1 cut(s) | 332 |
| EclXI | CGGCCG | 2 cut(s) | 359, 437 |
| Eco31I | GGTCTC | 1 cut(s) | 107 |
| Eco47I | GGWCC | 3 cut(s) | 150, 156, 228 |
| Eco52I | CGGCCG | 2 cut(s) | 359, 437 |
| FaeI | CATG | 1 cut(s) | 147 |
| FaiI | YATR | 2 cut(s) | 145, 200 |
| FatI | CATG | 1 cut(s) | 143 |
| FauI | CCCGC | 2 cut(s) | 93, 186 |
| Fnu4HI | GCNGC | 4 cut(s) | 164, 315, 370, 440 |
| FokI | GGATG | 1 cut(s) | 287 |
| Fsp4HI | GCNGC | 4 cut(s) | 164, 315, 370, 440 |
| GlaI | GCGC | 3 cut(s) | 56, 313, 414 |
| GluI | GCNGC | 4 cut(s) | 164, 315, 370, 440 |
| HaeII | RGCGCY | 1 cut(s) | 58 |
| HaeIII | GGCC | 5 cut(s) | 219, 299, 361, 439, 491 |
| HapII | CCGG | 5 cut(s) | 110, 153, 226, 296, 362 |
| HhaI | GCGC | 3 cut(s) | 57, 314, 415 |
| Hin1II | CATG | 1 cut(s) | 147 |
| Hin6I | GCGC | 3 cut(s) | 55, 312, 413 |
| HinP1I | GCGC | 3 cut(s) | 55, 312, 413 |
| HinfI | GANTC | 4 cut(s) | 170, 184, 240, 272 |
| HpaII | CCGG | 5 cut(s) | 110, 153, 226, 296, 362 |
| HphI | GGTGA | 2 cut(s) | 183, 421 |
| Hpy166II | GTNNAC | 1 cut(s) | 429 |
| Hpy188I | TCNGA | 2 cut(s) | 150, 235 |
| Hpy188III | TCNNGA | 2 cut(s) | 110, 134 |
| Hpy8I | GTNNAC | 1 cut(s) | 429 |
| HpyAV | CCTTC | 2 cut(s) | 204, 230 |
| HpyCH4III | ACNGT | 1 cut(s) | 259 |
| Hsp92II | CATG | 1 cut(s) | 147 |
| HspAI | GCGC | 3 cut(s) | 55, 312, 413 |
| Kpn2I | TCCGGA | 1 cut(s) | 109 |
| KpnI | GGTACC | 1 cut(s) | 332 |
| Kzo9I | GATC | 2 cut(s) | 350, 391 |
| LguI | GCTCTTC | 1 cut(s) | 331 |
| LmnI | GCTCC | 2 cut(s) | 10, 319 |
| LpnPI | CCDG | 5 cut(s) | 123, 166, 239, 309, 375 |
| MalI | GATC | 2 cut(s) | 352, 393 |
| MboI | GATC | 2 cut(s) | 350, 391 |
| MboII | GAAGA | 5 cut(s) | 28, 47, 50, 348, 399 |
| MhlI | GDGCHC | 3 cut(s) | 86, 270, 295 |
| MlsI | TGGCCA | 1 cut(s) | 491 |
| MluCI | AATT | 1 cut(s) | 129 |
| MluNI | TGGCCA | 1 cut(s) | 491 |
| MlyI | GAGTC | 3 cut(s) | 164, 178, 234 |
| MmeI | TCCRAC | 1 cut(s) | 128 |
| MnlI | CCTC | 4 cut(s) | 135, 241, 314, 453 |
| Mox20I | TGGCCA | 1 cut(s) | 491 |
| MroI | TCCGGA | 1 cut(s) | 109 |
| MscI | TGGCCA | 1 cut(s) | 491 |
| Msp20I | TGGCCA | 1 cut(s) | 491 |
| MspI | CCGG | 5 cut(s) | 110, 153, 226, 296, 362 |
| MspR9I | CCNGG | 1 cut(s) | 154 |
| Mva1269I | GAATGC | 1 cut(s) | 88 |
| MvnI | CGCG | 7 cut(s) | 166, 312, 314, 334, 369, 413, 415 |
| NciI | CCSGG | 1 cut(s) | 154 |
| NdeII | GATC | 2 cut(s) | 350, 391 |
| NlaIII | CATG | 1 cut(s) | 147 |
| NlaIV | GGNNCC | 7 cut(s) | 6, 71, 83, 157, 267, 294, 330 |
| NmeAIII | GCCGAG | 2 cut(s) | 337, 415 |
| PciSI | GCTCTTC | 1 cut(s) | 331 |
| PctI | GAATGC | 1 cut(s) | 88 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PflFI | GACNNNGTC | 1 cut(s) | 154 |
| PkrI | GCNGC | 4 cut(s) | 165, 316, 371, 441 |
| PleI | GAGTC | 3 cut(s) | 164, 178, 234 |
| PpsI | GAGTC | 3 cut(s) | 164, 178, 234 |
| PspN4I | GGNNCC | 7 cut(s) | 6, 71, 83, 157, 267, 294, 330 |
| PspPI | GGNCC | 4 cut(s) | 150, 156, 218, 228 |
| PsyI | GACNNNGTC | 1 cut(s) | 154 |
| RsaI | GTAC | 1 cut(s) | 330 |
| RsaNI | GTAC | 1 cut(s) | 329 |
| Rsr2I | CGGWCCG | 1 cut(s) | 150 |
| RsrII | CGGWCCG | 1 cut(s) | 150 |
| SapI | GCTCTTC | 1 cut(s) | 331 |
| SatI | GCNGC | 4 cut(s) | 164, 315, 370, 440 |
| Sau3AI | GATC | 2 cut(s) | 350, 391 |
| Sau96I | GGNCC | 4 cut(s) | 150, 156, 218, 228 |
| SchI | GAGTC | 3 cut(s) | 164, 178, 234 |
| ScrFI | CCNGG | 1 cut(s) | 154 |
| SduI | GDGCHC | 3 cut(s) | 86, 270, 295 |
| SetI | ASST | 3 cut(s) | 196, 324, 475 |
| SinI | GGWCC | 3 cut(s) | 150, 156, 228 |
| Sse9I | AATT | 1 cut(s) | 129 |
| StyD4I | CCNGG | 1 cut(s) | 152 |
| TaaI | ACNGT | 1 cut(s) | 259 |
| TaqI | TCGA | 3 cut(s) | 27, 278, 483 |
| TasI | AATT | 1 cut(s) | 129 |
| TauI | GCSGC | 4 cut(s) | 166, 317, 372, 442 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| TspDTI | ATGAA | 3 cut(s) | 63, 81, 202 |
| TspGWI | ACGGA | 1 cut(s) | 148 |
| Tth111I | GACNNNGTC | 1 cut(s) | 154 |
| VpaK11BI | GGWCC | 3 cut(s) | 150, 156, 228 |