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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1029, 1531 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1371 |
| Acc16I | TGCGCA | 1 cut(s) | 1530 |
| Acc36I | ACCTGC | 3 cut(s) | 1029, 1531, 1635 |
| Acc65I | GGTACC | 1 cut(s) | 211 |
| AccB1I | GGYRCC | 1 cut(s) | 211 |
| AccBSI | CCGCTC | 1 cut(s) | 759 |
| AccII | CGCG | 9 cut(s) | 90, 579, 607, 1196, 1232, 1308, 1397, 1437, 1523 |
| AccIII | TCCGGA | 1 cut(s) | 275 |
| AclWI | GGATC | 5 cut(s) | 65, 143, 1045, 1091, 1640 |
| AcoI | YGGCCR | 4 cut(s) | 613, 639, 646, 1233 |
| AcuI | CTGAAG | 5 cut(s) | 506, 516, 711, 837, 1655 |
| AcyI | GRCGYC | 1 cut(s) | 342 |
| AfaI | GTAC | 6 cut(s) | 213, 531, 1006, 1066, 1311, 1428 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 275, 553, 559, 592, 593, 611, 644, 1115 |
| AgeI | ACCGGT | 1 cut(s) | 535 |
| AgsI | TTSAA | 4 cut(s) | 50, 1157, 1244, 1664 |
| AjnI | CCWGG | 5 cut(s) | 64, 96, 547, 558, 1327 |
| Alw21I | GWGCWC | 1 cut(s) | 1411 |
| Alw26I | GTCTC | 4 cut(s) | 365, 394, 1113, 1782 |
| AlwI | GGATC | 5 cut(s) | 65, 143, 1045, 1091, 1640 |
| Ama87I | CYCGRG | 1 cut(s) | 1274 |
| Aor13HI | TCCGGA | 1 cut(s) | 275 |
| ApaI | GGGCCC | 1 cut(s) | 270 |
| ApeKI | GCWGC | 6 cut(s) | 731, 734, 753, 857, 1357, 1360 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 410, 442 |
| AscI | GGCGCGCC | 1 cut(s) | 1395 |
| AseI | ATTAAT | 2 cut(s) | 1506, 1682 |
| AsiGI | ACCGGT | 1 cut(s) | 535 |
| Asp718I | GGTACC | 1 cut(s) | 211 |
| AsuC2I | CCSGG | 3 cut(s) | 554, 638, 1392 |
| AsuHPI | GGTGA | 2 cut(s) | 950, 1723 |
| AsuII | TTCGAA | 1 cut(s) | 1767 |
| AvaI | CYCGRG | 1 cut(s) | 1274 |
| AvaII | GGWCC | 6 cut(s) | 278, 763, 901, 1373, 1624, 1653 |
| AxyI | CCTNAGG | 2 cut(s) | 1029, 1649 |
| BaeGI | GKGCMC | 1 cut(s) | 270 |
| BalI | TGGCCA | 1 cut(s) | 648 |
| BanI | GGYRCC | 1 cut(s) | 211 |
| BanII | GRGCYC | 6 cut(s) | 270, 331, 547, 684, 1110, 1411 |
| Bbv12I | GWGCWC | 1 cut(s) | 1411 |
| BbvCI | CCTCAGC | 3 cut(s) | 449, 1077, 1740 |
| BbvI | GCAGC | 6 cut(s) | 721, 743, 765, 869, 1344, 1372 |
| BccI | CCATC | 4 cut(s) | 46, 935, 1211, 1417 |
| BceAI | ACGGC | 2 cut(s) | 329, 1731 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 149, 183, 410, 444, 946, 980, 1676, 1710 |
| BciT130I | CCWGG | 5 cut(s) | 66, 98, 549, 560, 1329 |
| BciVI | GTATCC | 1 cut(s) | 359 |
| BcnI | CCSGG | 3 cut(s) | 554, 638, 1392 |
| BcoDI | GTCTC | 4 cut(s) | 365, 394, 1113, 1782 |
| BfaI | CTAG | 4 cut(s) | 308, 861, 1536, 1745 |
| BfmI | CTRYAG | 2 cut(s) | 1358, 1555 |
| BfoI | RGCGCY | 1 cut(s) | 896 |
| BfuAI | ACCTGC | 3 cut(s) | 1029, 1531, 1635 |
| BfuI | GTATCC | 1 cut(s) | 359 |
| BmcAI | AGTACT | 1 cut(s) | 1066 |
| Bme1390I | CCNGG | 8 cut(s) | 66, 98, 549, 554, 560, 638, 1329, 1392 |
| Bme18I | GGWCC | 6 cut(s) | 278, 763, 901, 1373, 1624, 1653 |
| BmeT110I | CYCGRG | 1 cut(s) | 1274 |
| BmrFI | CCNGG | 8 cut(s) | 66, 98, 549, 554, 560, 638, 1329, 1392 |
| BmrI | ACTGGG | 1 cut(s) | 334 |
| BmsI | GCATC | 4 cut(s) | 220, 468, 660, 1592 |
| BmuI | ACTGGG | 1 cut(s) | 334 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1599, 1631 |
| BpmI | CTGGAG | 2 cut(s) | 573, 1311 |
| Bpu10I | CCTNAGC | 3 cut(s) | 449, 1077, 1740 |
| Bpu14I | TTCGAA | 1 cut(s) | 1767 |
| BpuEI | CTTGAG | 4 cut(s) | 1200, 1395, 1745, 1776 |
| BpuMI | CCSGG | 3 cut(s) | 554, 638, 1392 |
| Bsa29I | ATCGAT | 1 cut(s) | 808 |
| BsaBI | GATNNNNATC | 3 cut(s) | 37, 945, 1055 |
| BsaHI | GRCGYC | 1 cut(s) | 342 |
| BsaI | GGTCTC | 1 cut(s) | 394 |
| BsaJI | CCNNGG | 7 cut(s) | 345, 547, 558, 636, 779, 897, 1230 |
| BsaWI | WCCGGW | 3 cut(s) | 275, 535, 1183 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1025, 1055, 1110, 1140, 1476, 1506 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 275, 553, 559, 592, 593, 611, 644, 1115 |
| Bse118I | RCCGGY | 3 cut(s) | 535, 822, 935 |
| Bse1I | ACTGG | 2 cut(s) | 190, 329 |
| Bse21I | CCTNAGG | 2 cut(s) | 1029, 1649 |
| Bse8I | GATNNNNATC | 3 cut(s) | 37, 945, 1055 |
| BseAI | TCCGGA | 1 cut(s) | 275 |
| BseBI | CCWGG | 5 cut(s) | 66, 98, 549, 560, 1329 |
| BseCI | ATCGAT | 1 cut(s) | 808 |
| BseDI | CCNNGG | 7 cut(s) | 345, 547, 558, 636, 779, 897, 1230 |
| BseGI | GGATG | 2 cut(s) | 946, 1583 |
| BseJI | GATNNNNATC | 3 cut(s) | 37, 945, 1055 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 275, 553, 559, 592, 593, 611, 644, 1115 |
| BseNI | ACTGG | 2 cut(s) | 190, 329 |
| BsePI | GCGCGC | 1 cut(s) | 1395 |
| BseRI | GAGGAG | 2 cut(s) | 1046, 1314 |
| BseSI | GKGCMC | 1 cut(s) | 270 |
| BseX3I | CGGCCG | 1 cut(s) | 639 |
| BseXI | GCAGC | 6 cut(s) | 721, 743, 765, 869, 1344, 1372 |
| BseYI | CCCAGC | 3 cut(s) | 513, 839, 1166 |
| BsgI | GTGCAG | 2 cut(s) | 986, 1565 |
| Bsh1236I | CGCG | 9 cut(s) | 90, 579, 607, 1196, 1232, 1308, 1397, 1437, 1523 |
| Bsh1285I | CGRYCG | 3 cut(s) | 536, 642, 1521 |
| BshNI | GGYRCC | 1 cut(s) | 211 |
| BshTI | ACCGGT | 1 cut(s) | 535 |
| BshVI | ATCGAT | 1 cut(s) | 808 |
| BsiEI | CGRYCG | 3 cut(s) | 536, 642, 1521 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1411 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1274 |
| BslFI | GGGAC | 2 cut(s) | 1364, 1637 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 275, 553, 559, 592, 593, 611, 644, 1115 |
| BsmAI | GTCTC | 4 cut(s) | 365, 394, 1113, 1782 |
| BsmFI | GGGAC | 2 cut(s) | 1364, 1637 |
| BsmI | GAATGC | 1 cut(s) | 303 |
| Bso31I | GGTCTC | 1 cut(s) | 394 |
| BsoBI | CYCGRG | 1 cut(s) | 1274 |
| Bsp119I | TTCGAA | 1 cut(s) | 1767 |
| Bsp120I | GGGCCC | 1 cut(s) | 266 |
| Bsp1286I | GDGCHC | 6 cut(s) | 270, 331, 547, 684, 1110, 1411 |
| Bsp13I | TCCGGA | 1 cut(s) | 275 |
| Bsp143I | GATC | 9 cut(s) | 70, 114, 135, 313, 805, 969, 1050, 1096, 1632 |
| Bsp19I | CCATGG | 1 cut(s) | 779 |
| Bsp68I | TCGCGA | 1 cut(s) | 579 |
| BspDI | ATCGAT | 1 cut(s) | 808 |
| BspEI | TCCGGA | 1 cut(s) | 275 |
| BspFNI | CGCG | 9 cut(s) | 90, 579, 607, 1196, 1232, 1308, 1397, 1437, 1523 |
| BspMAI | CTGCAG | 1 cut(s) | 1362 |
| BspMI | ACCTGC | 3 cut(s) | 1029, 1531, 1635 |
| BspPI | GGATC | 5 cut(s) | 65, 143, 1045, 1091, 1640 |
| BspQI | GCTCTTC | 1 cut(s) | 856 |
| BspT104I | TTCGAA | 1 cut(s) | 1767 |
| BspT107I | GGYRCC | 1 cut(s) | 211 |
| BspTNI | GGTCTC | 1 cut(s) | 394 |
| BsrBI | CCGCTC | 1 cut(s) | 759 |
| BsrFI | RCCGGY | 3 cut(s) | 535, 822, 935 |
| BsrI | ACTGG | 2 cut(s) | 190, 329 |
| BssAI | RCCGGY | 3 cut(s) | 535, 822, 935 |
| BssECI | CCNNGG | 7 cut(s) | 345, 547, 558, 636, 779, 897, 1230 |
| BssHII | GCGCGC | 1 cut(s) | 1395 |
| BssMI | GATC | 9 cut(s) | 70, 114, 135, 313, 805, 969, 1050, 1096, 1632 |
| BssNI | GRCGYC | 1 cut(s) | 342 |
| BssT1I | CCWWGG | 1 cut(s) | 779 |
| Bst2UI | CCWGG | 5 cut(s) | 66, 98, 549, 560, 1329 |
| Bst4CI | ACNGT | 3 cut(s) | 727, 1069, 1240 |
| Bst6I | CTCTTC | 3 cut(s) | 443, 525, 856 |
| BstACI | GRCGYC | 1 cut(s) | 342 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1044 |
| BstBI | TTCGAA | 1 cut(s) | 1767 |
| BstDSI | CCRYGG | 4 cut(s) | 345, 779, 897, 1230 |
| BstF5I | GGATG | 2 cut(s) | 946, 1583 |
| BstFNI | CGCG | 9 cut(s) | 90, 579, 607, 1196, 1232, 1308, 1397, 1437, 1523 |
| BstH2I | RGCGCY | 1 cut(s) | 896 |
| BstKTI | GATC | 9 cut(s) | 73, 117, 138, 316, 808, 972, 1053, 1099, 1635 |
| BstMAI | GTCTC | 4 cut(s) | 365, 394, 1113, 1782 |
| BstMBI | GATC | 9 cut(s) | 70, 114, 135, 313, 805, 969, 1050, 1096, 1632 |
| BstMCI | CGRYCG | 3 cut(s) | 536, 642, 1521 |
| BstNI | CCWGG | 5 cut(s) | 66, 98, 549, 560, 1329 |
| BstNSI | RCATGY | 1 cut(s) | 839 |
| BstSCI | CCNGG | 8 cut(s) | 64, 96, 547, 552, 558, 636, 1327, 1390 |
| BstSFI | CTRYAG | 2 cut(s) | 1358, 1555 |
| BstSLI | GKGCMC | 1 cut(s) | 270 |
| BstUI | CGCG | 9 cut(s) | 90, 579, 607, 1196, 1232, 1308, 1397, 1437, 1523 |
| BstV1I | GCAGC | 6 cut(s) | 721, 743, 765, 869, 1344, 1372 |
| BstX2I | RGATCY | 1 cut(s) | 1632 |
| BstYI | RGATCY | 1 cut(s) | 1632 |
| BstZI | CGGCCG | 1 cut(s) | 639 |
| Bsu15I | ATCGAT | 1 cut(s) | 808 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1029, 1649 |
| BsuI | GTATCC | 1 cut(s) | 359 |
| BsuTUI | ATCGAT | 1 cut(s) | 808 |
| BtgI | CCRYGG | 4 cut(s) | 345, 779, 897, 1230 |
| BtgZI | GCGATG | 2 cut(s) | 683, 1787 |
| BtsCI | GGATG | 2 cut(s) | 946, 1583 |
| BtsIMutI | CAGTG | 5 cut(s) | 81, 771, 1101, 1236, 1449 |
| BtuMI | TCGCGA | 1 cut(s) | 579 |
| BveI | ACCTGC | 3 cut(s) | 1029, 1531, 1635 |
| Cfr10I | RCCGGY | 3 cut(s) | 535, 822, 935 |
| Cfr42I | CCGCGG | 1 cut(s) | 1233 |
| ClaI | ATCGAT | 1 cut(s) | 808 |
| CseI | GACGC | 3 cut(s) | 350, 1028, 1202 |
| Csp6I | GTAC | 6 cut(s) | 212, 530, 1005, 1065, 1310, 1427 |
| CspAI | ACCGGT | 1 cut(s) | 535 |
| CviAII | CATG | 4 cut(s) | 16, 780, 836, 1123 |
| CviQI | GTAC | 6 cut(s) | 212, 530, 1005, 1065, 1310, 1427 |
| DpnI | GATC | 9 cut(s) | 72, 116, 137, 315, 807, 971, 1052, 1098, 1634 |
| DpnII | GATC | 9 cut(s) | 70, 114, 135, 313, 805, 969, 1050, 1096, 1632 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1371 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1371 |
| EaeI | YGGCCR | 4 cut(s) | 613, 639, 646, 1233 |
| EagI | CGGCCG | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 3 cut(s) | 443, 525, 856 |
| EarI | CTCTTC | 3 cut(s) | 443, 525, 856 |
| Ecl136II | GAGCTC | 1 cut(s) | 1409 |
| EclXI | CGGCCG | 1 cut(s) | 639 |
| Eco130I | CCWWGG | 1 cut(s) | 779 |
| Eco24I | GRGCYC | 6 cut(s) | 270, 331, 547, 684, 1110, 1411 |
| Eco31I | GGTCTC | 1 cut(s) | 394 |
| Eco32I | GATATC | 1 cut(s) | 1255 |
| Eco47I | GGWCC | 6 cut(s) | 278, 763, 901, 1373, 1624, 1653 |
| Eco52I | CGGCCG | 1 cut(s) | 639 |
| Eco53kI | GAGCTC | 1 cut(s) | 1409 |
| Eco57I | CTGAAG | 5 cut(s) | 506, 516, 711, 837, 1655 |
| Eco81I | CCTNAGG | 2 cut(s) | 1029, 1649 |
| Eco88I | CYCGRG | 1 cut(s) | 1274 |
| EcoICRI | GAGCTC | 1 cut(s) | 1409 |
| EcoO109I | RGGNCCY | 4 cut(s) | 267, 1373, 1624, 1653 |
| EcoRII | CCWGG | 5 cut(s) | 64, 96, 547, 558, 1327 |
| EcoRV | GATATC | 1 cut(s) | 1255 |
| EcoT14I | CCWWGG | 1 cut(s) | 779 |
| EcoT38I | GRGCYC | 6 cut(s) | 270, 331, 547, 684, 1110, 1411 |
| ErhI | CCWWGG | 1 cut(s) | 779 |
| FaeI | CATG | 4 cut(s) | 19, 783, 839, 1126 |
| FaqI | GGGAC | 2 cut(s) | 1364, 1637 |
| FatI | CATG | 4 cut(s) | 15, 779, 835, 1122 |
| FauI | CCCGC | 3 cut(s) | 194, 472, 808 |
| FokI | GGATG | 2 cut(s) | 933, 1570 |
| FriOI | GRGCYC | 6 cut(s) | 270, 331, 547, 684, 1110, 1411 |
| FspBI | CTAG | 4 cut(s) | 308, 861, 1536, 1745 |
| FspI | TGCGCA | 1 cut(s) | 1530 |
| GsaI | CCCAGC | 3 cut(s) | 517, 843, 1170 |
| GsuI | CTGGAG | 2 cut(s) | 573, 1311 |
| HaeII | RGCGCY | 1 cut(s) | 896 |
| HgaI | GACGC | 3 cut(s) | 350, 1028, 1202 |
| Hin1I | GRCGYC | 1 cut(s) | 342 |
| Hin1II | CATG | 4 cut(s) | 19, 783, 839, 1126 |
| HinfI | GANTC | 7 cut(s) | 19, 33, 406, 574, 695, 958, 1592 |
| HphI | GGTGA | 2 cut(s) | 950, 1723 |
| Hpy166II | GTNNAC | 1 cut(s) | 349 |
| Hpy188I | TCNGA | 8 cut(s) | 127, 333, 443, 496, 763, 991, 1503, 1782 |
| Hpy8I | GTNNAC | 1 cut(s) | 349 |
| Hpy99I | CGWCG | 4 cut(s) | 344, 422, 731, 822 |
| HpyAV | CCTTC | 8 cut(s) | 71, 282, 356, 839, 923, 1022, 1290, 1774 |
| HpyCH4III | ACNGT | 3 cut(s) | 727, 1069, 1240 |
| HpyCH4IV | ACGT | 2 cut(s) | 1149, 1798 |
| HpyCH4V | TGCA | 6 cut(s) | 431, 506, 967, 1360, 1546, 1568 |
| HpySE526I | ACGT | 2 cut(s) | 1149, 1798 |
| Hsp92I | GRCGYC | 1 cut(s) | 342 |
| Hsp92II | CATG | 4 cut(s) | 19, 783, 839, 1126 |
| Kpn2I | TCCGGA | 1 cut(s) | 275 |
| KpnI | GGTACC | 1 cut(s) | 215 |
| KspI | CCGCGG | 1 cut(s) | 1233 |
| Kzo9I | GATC | 9 cut(s) | 70, 114, 135, 313, 805, 969, 1050, 1096, 1632 |
| LguI | GCTCTTC | 1 cut(s) | 856 |
| LmnI | GCTCC | 3 cut(s) | 1033, 1163, 1327 |
| Lsp1109I | GCAGC | 6 cut(s) | 721, 743, 765, 869, 1344, 1372 |
| LweI | GCATC | 4 cut(s) | 220, 468, 660, 1592 |
| MaeI | CTAG | 4 cut(s) | 308, 861, 1536, 1745 |
| MaeII | ACGT | 2 cut(s) | 1149, 1798 |
| MaeIII | GTNAC | 1 cut(s) | 1711 |
| MalI | GATC | 9 cut(s) | 72, 116, 137, 315, 807, 971, 1052, 1098, 1634 |
| MbiI | CCGCTC | 1 cut(s) | 759 |
| MboI | GATC | 9 cut(s) | 70, 114, 135, 313, 805, 969, 1050, 1096, 1632 |
| MfeI | CAATTG | 2 cut(s) | 206, 397 |
| MflI | RGATCY | 1 cut(s) | 1632 |
| MhlI | GDGCHC | 6 cut(s) | 270, 331, 547, 684, 1110, 1411 |
| MlsI | TGGCCA | 1 cut(s) | 648 |
| MluCI | AATT | 5 cut(s) | 206, 397, 1083, 1679, 1700 |
| MluNI | TGGCCA | 1 cut(s) | 648 |
| MlyI | GAGTC | 2 cut(s) | 400, 1586 |
| MmeI | TCCRAC | 1 cut(s) | 1272 |
| Mox20I | TGGCCA | 1 cut(s) | 648 |
| MroI | TCCGGA | 1 cut(s) | 275 |
| MscI | TGGCCA | 1 cut(s) | 648 |
| MseI | TTAA | 3 cut(s) | 1506, 1682, 1801 |
| Msp20I | TGGCCA | 1 cut(s) | 648 |
| MspA1I | CMGCKG | 4 cut(s) | 644, 734, 803, 1232 |
| MspR9I | CCNGG | 8 cut(s) | 66, 98, 549, 554, 560, 638, 1329, 1392 |
| MteI | GCGCNGCGC | 1 cut(s) | 605 |
| MunI | CAATTG | 2 cut(s) | 206, 397 |
| Mva1269I | GAATGC | 1 cut(s) | 303 |
| MvaI | CCWGG | 5 cut(s) | 66, 98, 549, 560, 1329 |
| MvnI | CGCG | 9 cut(s) | 90, 579, 607, 1196, 1232, 1308, 1397, 1437, 1523 |
| NciI | CCSGG | 3 cut(s) | 554, 638, 1392 |
| NcoI | CCATGG | 1 cut(s) | 779 |
| NdeII | GATC | 9 cut(s) | 70, 114, 135, 313, 805, 969, 1050, 1096, 1632 |
| NlaIII | CATG | 4 cut(s) | 19, 783, 839, 1126 |
| NmeAIII | GCCGAG | 1 cut(s) | 703 |
| NmuCI | GTSAC | 1 cut(s) | 1711 |
| NruI | TCGCGA | 1 cut(s) | 579 |
| NsbI | TGCGCA | 1 cut(s) | 1530 |
| NspI | RCATGY | 1 cut(s) | 839 |
| NspV | TTCGAA | 1 cut(s) | 1767 |
| PalAI | GGCGCGCC | 1 cut(s) | 1395 |
| PaqCI | CACCTGC | 2 cut(s) | 1029, 1531 |
| PauI | GCGCGC | 1 cut(s) | 1395 |
| PciSI | GCTCTTC | 1 cut(s) | 856 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 538, 576, 681, 814, 1438 |
| PctI | GAATGC | 1 cut(s) | 303 |
| PfeI | GAWTC | 5 cut(s) | 19, 33, 574, 695, 958 |
| PfoI | TCCNGGA | 1 cut(s) | 1327 |
| PinAI | ACCGGT | 1 cut(s) | 535 |
| PleI | GAGTC | 2 cut(s) | 400, 1586 |
| PpsI | GAGTC | 2 cut(s) | 400, 1586 |
| PpuMI | RGGWCCY | 3 cut(s) | 1373, 1624, 1653 |
| PshBI | ATTAAT | 2 cut(s) | 1506, 1682 |
| Psp124BI | GAGCTC | 1 cut(s) | 1411 |
| Psp5II | RGGWCCY | 3 cut(s) | 1373, 1624, 1653 |
| Psp6I | CCWGG | 5 cut(s) | 64, 96, 547, 558, 1327 |
| PspFI | CCCAGC | 3 cut(s) | 513, 839, 1166 |
| PspGI | CCWGG | 5 cut(s) | 64, 96, 547, 558, 1327 |
| PspOMI | GGGCCC | 1 cut(s) | 266 |
| PspPPI | RGGWCCY | 3 cut(s) | 1373, 1624, 1653 |
| PstI | CTGCAG | 1 cut(s) | 1362 |
| PsuI | RGATCY | 1 cut(s) | 1632 |
| PteI | GCGCGC | 1 cut(s) | 1395 |
| PvuII | CAGCTG | 1 cut(s) | 734 |
| RruI | TCGCGA | 1 cut(s) | 579 |
| RsaI | GTAC | 6 cut(s) | 213, 531, 1006, 1066, 1311, 1428 |
| RsaNI | GTAC | 6 cut(s) | 212, 530, 1005, 1065, 1310, 1427 |
| SacI | GAGCTC | 1 cut(s) | 1411 |
| SacII | CCGCGG | 1 cut(s) | 1233 |
| SapI | GCTCTTC | 1 cut(s) | 856 |
| SaqAI | TTAA | 3 cut(s) | 1506, 1682, 1801 |
| Sau3AI | GATC | 9 cut(s) | 70, 114, 135, 313, 805, 969, 1050, 1096, 1632 |
| ScaI | AGTACT | 1 cut(s) | 1066 |
| SchI | GAGTC | 2 cut(s) | 400, 1586 |
| ScrFI | CCNGG | 8 cut(s) | 66, 98, 549, 554, 560, 638, 1329, 1392 |
| SduI | GDGCHC | 6 cut(s) | 270, 331, 547, 684, 1110, 1411 |
| SfaNI | GCATC | 4 cut(s) | 220, 468, 660, 1592 |
| SfcI | CTRYAG | 2 cut(s) | 1358, 1555 |
| Sfr303I | CCGCGG | 1 cut(s) | 1233 |
| SfuI | TTCGAA | 1 cut(s) | 1767 |
| SgrAI | CRCCGGYG | 1 cut(s) | 935 |
| SgrBI | CCGCGG | 1 cut(s) | 1233 |
| SgsI | GGCGCGCC | 1 cut(s) | 1395 |
| SinI | GGWCC | 6 cut(s) | 278, 763, 901, 1373, 1624, 1653 |
| SmlI | CTYRAG | 4 cut(s) | 1215, 1410, 1724, 1791 |
| SmoI | CTYRAG | 4 cut(s) | 1215, 1410, 1724, 1791 |
| Sse9I | AATT | 5 cut(s) | 206, 397, 1083, 1679, 1700 |
| SspI | AATATT | 1 cut(s) | 1418 |
| SspMI | CTAG | 4 cut(s) | 308, 861, 1536, 1745 |
| SstI | GAGCTC | 1 cut(s) | 1411 |
| StyD4I | CCNGG | 8 cut(s) | 64, 96, 547, 552, 558, 636, 1327, 1390 |
| StyI | CCWWGG | 1 cut(s) | 779 |
| TaaI | ACNGT | 3 cut(s) | 727, 1069, 1240 |
| TaiI | ACGT | 2 cut(s) | 1152, 1801 |
| TaqI | TCGA | 6 cut(s) | 339, 808, 956, 1314, 1686, 1767 |
| TaqII | GACCGA | 1 cut(s) | 185 |
| TasI | AATT | 5 cut(s) | 206, 397, 1083, 1679, 1700 |
| TatI | WGTACW | 2 cut(s) | 1004, 1064 |
| TfiI | GAWTC | 5 cut(s) | 19, 33, 574, 695, 958 |
| Tru1I | TTAA | 3 cut(s) | 1506, 1682, 1801 |
| Tru9I | TTAA | 3 cut(s) | 1506, 1682, 1801 |
| TscAI | CASTG | 5 cut(s) | 88, 778, 1108, 1243, 1456 |
| TseFI | GTSAC | 1 cut(s) | 1711 |
| TseI | GCWGC | 6 cut(s) | 731, 734, 753, 857, 1357, 1360 |
| Tsp45I | GTSAC | 1 cut(s) | 1711 |
| TspDTI | ATGAA | 3 cut(s) | 807, 1356, 1524 |
| TspGWI | ACGGA | 3 cut(s) | 366, 382, 914 |
| TspRI | CASTG | 5 cut(s) | 88, 778, 1108, 1243, 1456 |
| VpaK11BI | GGWCC | 6 cut(s) | 278, 763, 901, 1373, 1624, 1653 |
| VspI | ATTAAT | 2 cut(s) | 1506, 1682 |
| XceI | RCATGY | 1 cut(s) | 839 |
| XspI | CTAG | 4 cut(s) | 308, 861, 1536, 1745 |
| ZrmI | AGTACT | 1 cut(s) | 1066 |