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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 579 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 220 |
| AccI | GTMKAC | 1 cut(s) | 621 |
| AciI | CCGC | 9 cut(s) | 36, 42, 75, 395, 460, 523, 602, 636, 638 |
| AclWI | GGATC | 1 cut(s) | 155 |
| AfaI | GTAC | 1 cut(s) | 748 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 178, 220, 616, 708, 709 |
| AflIII | ACRYGT | 1 cut(s) | 417 |
| AgsI | TTSAA | 2 cut(s) | 426, 488 |
| AjnI | CCWGG | 1 cut(s) | 60 |
| AluBI | AGCT | 4 cut(s) | 6, 50, 341, 357 |
| AluI | AGCT | 4 cut(s) | 6, 50, 341, 357 |
| Alw26I | GTCTC | 2 cut(s) | 297, 728 |
| AlwI | GGATC | 1 cut(s) | 155 |
| Ama87I | CYCGRG | 1 cut(s) | 579 |
| AoxI | GGCC | 5 cut(s) | 76, 210, 231, 607, 699 |
| ApeKI | GCWGC | 4 cut(s) | 275, 341, 344, 536 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 321 |
| AspLEI | GCGC | 4 cut(s) | 46, 494, 527, 665 |
| AspS9I | GGNCC | 6 cut(s) | 139, 168, 181, 211, 232, 700 |
| AsuC2I | CCSGG | 1 cut(s) | 690 |
| AsuHPI | GGTGA | 2 cut(s) | 238, 392 |
| AsuII | TTCGAA | 1 cut(s) | 282 |
| AsuNHI | GCTAGC | 1 cut(s) | 353 |
| AvaI | CYCGRG | 1 cut(s) | 579 |
| AvaII | GGWCC | 3 cut(s) | 139, 168, 181 |
| AxyI | CCTNAGG | 1 cut(s) | 112 |
| BbvI | GCAGC | 4 cut(s) | 287, 328, 331, 523 |
| BccI | CCATC | 1 cut(s) | 473 |
| BceAI | ACGGC | 1 cut(s) | 246 |
| BciT130I | CCWGG | 1 cut(s) | 62 |
| BcnI | CCSGG | 1 cut(s) | 690 |
| BcoDI | GTCTC | 2 cut(s) | 297, 728 |
| BfaI | CTAG | 3 cut(s) | 51, 354, 365 |
| BfmI | CTRYAG | 1 cut(s) | 537 |
| BfoI | RGCGCY | 1 cut(s) | 495 |
| BisI | GCNGC | 6 cut(s) | 76, 276, 342, 345, 523, 537 |
| BlsI | GCNGC | 6 cut(s) | 77, 277, 343, 346, 524, 538 |
| Bme1390I | CCNGG | 2 cut(s) | 62, 690 |
| Bme18I | GGWCC | 3 cut(s) | 139, 168, 181 |
| BmeT110I | CYCGRG | 1 cut(s) | 579 |
| BmgT120I | GGNCC | 6 cut(s) | 139, 168, 181, 211, 232, 700 |
| BmiI | GGNNCC | 3 cut(s) | 140, 170, 252 |
| BmrFI | CCNGG | 2 cut(s) | 62, 690 |
| BmrI | ACTGGG | 1 cut(s) | 208 |
| BmsI | GCATC | 1 cut(s) | 107 |
| BmtI | GCTAGC | 1 cut(s) | 357 |
| BmuI | ACTGGG | 1 cut(s) | 208 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 649, 681 |
| Bpu14I | TTCGAA | 1 cut(s) | 282 |
| BpuEI | CTTGAG | 2 cut(s) | 260, 291 |
| BpuMI | CCSGG | 1 cut(s) | 690 |
| BsaI | GGTCTC | 1 cut(s) | 728 |
| BsaJI | CCNNGG | 4 cut(s) | 207, 270, 636, 703 |
| BsaWI | WCCGGW | 1 cut(s) | 743 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 32, 666, 696 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 178, 220, 616, 708, 709 |
| Bse1I | ACTGG | 1 cut(s) | 214 |
| Bse21I | CCTNAGG | 1 cut(s) | 112 |
| Bse3DI | GCAATG | 1 cut(s) | 294 |
| BseBI | CCWGG | 1 cut(s) | 62 |
| BseDI | CCNNGG | 4 cut(s) | 207, 270, 636, 703 |
| BseGI | GGATG | 1 cut(s) | 757 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 178, 220, 616, 708, 709 |
| BseMI | GCAATG | 1 cut(s) | 294 |
| BseMII | CTCAG | 3 cut(s) | 308, 543, 783 |
| BseNI | ACTGG | 1 cut(s) | 214 |
| BseRI | GAGGAG | 2 cut(s) | 569, 597 |
| BseXI | GCAGC | 4 cut(s) | 287, 328, 331, 523 |
| BsgI | GTGCAG | 1 cut(s) | 8 |
| Bsh1285I | CGRYCG | 3 cut(s) | 36, 42, 121 |
| BshFI | GGCC | 5 cut(s) | 78, 212, 233, 609, 701 |
| BsiEI | CGRYCG | 3 cut(s) | 36, 42, 121 |
| BsiHKCI | CYCGRG | 1 cut(s) | 579 |
| BsiSI | CCGG | 2 cut(s) | 690, 744 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 178, 220, 616, 708, 709 |
| BsmAI | GTCTC | 2 cut(s) | 297, 728 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsnI | GGCC | 5 cut(s) | 78, 212, 233, 609, 701 |
| Bso31I | GGTCTC | 1 cut(s) | 728 |
| BsoBI | CYCGRG | 1 cut(s) | 579 |
| Bsp119I | TTCGAA | 1 cut(s) | 282 |
| Bsp143I | GATC | 4 cut(s) | 118, 147, 772, 783 |
| Bsp68I | TCGCGA | 1 cut(s) | 105 |
| BspACI | CCGC | 9 cut(s) | 36, 42, 75, 395, 460, 523, 602, 636, 638 |
| BspANI | GGCC | 5 cut(s) | 78, 212, 233, 609, 701 |
| BspCNI | CTCAG | 3 cut(s) | 307, 544, 782 |
| BspLI | GGNNCC | 3 cut(s) | 140, 170, 252 |
| BspMAI | CTGCAG | 1 cut(s) | 541 |
| BspOI | GCTAGC | 1 cut(s) | 357 |
| BspPI | GGATC | 1 cut(s) | 155 |
| BspT104I | TTCGAA | 1 cut(s) | 282 |
| BspTNI | GGTCTC | 1 cut(s) | 728 |
| BsrDI | GCAATG | 1 cut(s) | 294 |
| BsrI | ACTGG | 1 cut(s) | 214 |
| BssECI | CCNNGG | 4 cut(s) | 207, 270, 636, 703 |
| BssMI | GATC | 4 cut(s) | 118, 147, 772, 783 |
| BssT1I | CCWWGG | 3 cut(s) | 207, 270, 703 |
| Bst2UI | CCWGG | 1 cut(s) | 62 |
| Bst4CI | ACNGT | 3 cut(s) | 404, 514, 626 |
| Bst6I | CTCTTC | 2 cut(s) | 731, 742 |
| BstBI | TTCGAA | 1 cut(s) | 282 |
| BstC8I | GCNNGC | 5 cut(s) | 48, 313, 339, 355, 667 |
| BstDEI | CTNAG | 4 cut(s) | 112, 294, 552, 769 |
| BstDSI | CCRYGG | 1 cut(s) | 636 |
| BstEII | GGTNACC | 1 cut(s) | 398 |
| BstF5I | GGATG | 1 cut(s) | 757 |
| BstH2I | RGCGCY | 1 cut(s) | 495 |
| BstHHI | GCGC | 4 cut(s) | 46, 494, 527, 665 |
| BstKTI | GATC | 4 cut(s) | 121, 150, 775, 786 |
| BstMAI | GTCTC | 2 cut(s) | 297, 728 |
| BstMBI | GATC | 4 cut(s) | 118, 147, 772, 783 |
| BstMCI | CGRYCG | 3 cut(s) | 36, 42, 121 |
| BstNI | CCWGG | 1 cut(s) | 62 |
| BstNSI | RCATGY | 1 cut(s) | 522 |
| BstPI | GGTNACC | 1 cut(s) | 398 |
| BstSCI | CCNGG | 2 cut(s) | 60, 688 |
| BstSFI | CTRYAG | 1 cut(s) | 537 |
| BstV1I | GCAGC | 4 cut(s) | 287, 328, 331, 523 |
| BstX2I | RGATCY | 2 cut(s) | 147, 783 |
| BstYI | RGATCY | 2 cut(s) | 147, 783 |
| Bsu36I | CCTNAGG | 1 cut(s) | 112 |
| BsuRI | GGCC | 5 cut(s) | 78, 212, 233, 609, 701 |
| BtgI | CCRYGG | 1 cut(s) | 636 |
| BtsCI | GGATG | 1 cut(s) | 757 |
| BtsI | GCAGTG | 1 cut(s) | 766 |
| BtsIMutI | CAGTG | 2 cut(s) | 510, 766 |
| BtuMI | TCGCGA | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 5 cut(s) | 48, 313, 339, 355, 667 |
| CfoI | GCGC | 4 cut(s) | 46, 494, 527, 665 |
| Cfr13I | GGNCC | 6 cut(s) | 139, 168, 181, 211, 232, 700 |
| Cfr42I | CCGCGG | 1 cut(s) | 639 |
| CseI | GACGC | 2 cut(s) | 121, 359 |
| Csp6I | GTAC | 1 cut(s) | 747 |
| CviAII | CATG | 2 cut(s) | 392, 519 |
| CviQI | GTAC | 1 cut(s) | 747 |
| DdeI | CTNAG | 4 cut(s) | 112, 294, 552, 769 |
| DpnI | GATC | 4 cut(s) | 120, 149, 774, 785 |
| DpnII | GATC | 4 cut(s) | 118, 147, 772, 783 |
| Eam1104I | CTCTTC | 2 cut(s) | 731, 742 |
| EarI | CTCTTC | 2 cut(s) | 731, 742 |
| EciI | GGCGGA | 1 cut(s) | 617 |
| Eco130I | CCWWGG | 3 cut(s) | 207, 270, 703 |
| Eco31I | GGTCTC | 1 cut(s) | 728 |
| Eco47I | GGWCC | 3 cut(s) | 139, 168, 181 |
| Eco81I | CCTNAGG | 1 cut(s) | 112 |
| Eco88I | CYCGRG | 1 cut(s) | 579 |
| Eco91I | GGTNACC | 1 cut(s) | 398 |
| EcoO109I | RGGNCCY | 2 cut(s) | 139, 181 |
| EcoO65I | GGTNACC | 1 cut(s) | 398 |
| EcoRII | CCWGG | 1 cut(s) | 60 |
| EcoT14I | CCWWGG | 3 cut(s) | 207, 270, 703 |
| ErhI | CCWWGG | 3 cut(s) | 207, 270, 703 |
| FaeI | CATG | 2 cut(s) | 395, 522 |
| FaiI | YATR | 6 cut(s) | 258, 260, 393, 449, 520, 716 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 710, 742 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 2 cut(s) | 391, 518 |
| FauI | CCCGC | 1 cut(s) | 388 |
| FblI | GTMKAC | 1 cut(s) | 621 |
| Fnu4HI | GCNGC | 6 cut(s) | 76, 276, 342, 345, 523, 537 |
| FokI | GGATG | 1 cut(s) | 764 |
| Fsp4HI | GCNGC | 6 cut(s) | 76, 276, 342, 345, 523, 537 |
| FspBI | CTAG | 3 cut(s) | 51, 354, 365 |
| GlaI | GCGC | 4 cut(s) | 45, 493, 526, 664 |
| GluI | GCNGC | 6 cut(s) | 76, 276, 342, 345, 523, 537 |
| HaeII | RGCGCY | 1 cut(s) | 495 |
| HaeIII | GGCC | 5 cut(s) | 78, 212, 233, 609, 701 |
| HapII | CCGG | 2 cut(s) | 690, 744 |
| HgaI | GACGC | 2 cut(s) | 121, 359 |
| HhaI | GCGC | 4 cut(s) | 46, 494, 527, 665 |
| Hin1II | CATG | 2 cut(s) | 395, 522 |
| Hin6I | GCGC | 4 cut(s) | 44, 492, 525, 663 |
| HinP1I | GCGC | 4 cut(s) | 44, 492, 525, 663 |
| HinfI | GANTC | 6 cut(s) | 107, 127, 467, 557, 658, 767 |
| HpaII | CCGG | 2 cut(s) | 690, 744 |
| HphI | GGTGA | 2 cut(s) | 238, 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 622 |
| Hpy188I | TCNGA | 8 cut(s) | 168, 297, 442, 553, 571, 772, 777, 788 |
| Hpy188III | TCNNGA | 3 cut(s) | 104, 179, 365 |
| Hpy8I | GTNNAC | 1 cut(s) | 622 |
| HpyAV | CCTTC | 5 cut(s) | 289, 591, 599, 702, 712 |
| HpyCH4III | ACNGT | 3 cut(s) | 404, 514, 626 |
| HpyCH4V | TGCA | 3 cut(s) | 25, 83, 539 |
| HpyF3I | CTNAG | 4 cut(s) | 112, 294, 552, 769 |
| Hsp92II | CATG | 2 cut(s) | 395, 522 |
| HspAI | GCGC | 4 cut(s) | 44, 492, 525, 663 |
| KspI | CCGCGG | 1 cut(s) | 639 |
| Kzo9I | GATC | 4 cut(s) | 118, 147, 772, 783 |
| LmnI | GCTCC | 2 cut(s) | 532, 584 |
| Lsp1109I | GCAGC | 4 cut(s) | 287, 328, 331, 523 |
| LweI | GCATC | 1 cut(s) | 107 |
| MaeI | CTAG | 3 cut(s) | 51, 354, 365 |
| MaeIII | GTNAC | 3 cut(s) | 226, 398, 514 |
| MalI | GATC | 4 cut(s) | 120, 149, 774, 785 |
| MboI | GATC | 4 cut(s) | 118, 147, 772, 783 |
| MboII | GAAGA | 3 cut(s) | 423, 718, 729 |
| MflI | RGATCY | 2 cut(s) | 147, 783 |
| MluI | ACGCGT | 1 cut(s) | 417 |
| MlyI | GAGTC | 4 cut(s) | 101, 566, 667, 761 |
| MmeI | TCCRAC | 1 cut(s) | 585 |
| MroXI | GAANNNNTTC | 1 cut(s) | 321 |
| MseI | TTAA | 1 cut(s) | 456 |
| MspA1I | CMGCKG | 1 cut(s) | 638 |
| MspI | CCGG | 2 cut(s) | 690, 744 |
| MspR9I | CCNGG | 2 cut(s) | 62, 690 |
| MvaI | CCWGG | 1 cut(s) | 62 |
| NciI | CCSGG | 1 cut(s) | 690 |
| NdeII | GATC | 4 cut(s) | 118, 147, 772, 783 |
| NheI | GCTAGC | 1 cut(s) | 353 |
| NlaIII | CATG | 2 cut(s) | 395, 522 |
| NlaIV | GGNNCC | 3 cut(s) | 140, 170, 252 |
| NmuCI | GTSAC | 2 cut(s) | 226, 398 |
| NruI | TCGCGA | 1 cut(s) | 105 |
| NspI | RCATGY | 1 cut(s) | 522 |
| NspV | TTCGAA | 1 cut(s) | 282 |
| PaeR7I | CTCGAG | 1 cut(s) | 579 |
| PdmI | GAANNNNTTC | 1 cut(s) | 321 |
| PfeI | GAWTC | 2 cut(s) | 127, 467 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 220 |
| PkrI | GCNGC | 6 cut(s) | 77, 277, 343, 346, 524, 538 |
| Ple19I | CGATCG | 1 cut(s) | 121 |
| PleI | GAGTC | 4 cut(s) | 101, 565, 666, 761 |
| PpsI | GAGTC | 4 cut(s) | 101, 565, 666, 761 |
| PpuMI | RGGWCCY | 2 cut(s) | 139, 181 |
| Psp5II | RGGWCCY | 2 cut(s) | 139, 181 |
| Psp6I | CCWGG | 1 cut(s) | 60 |
| PspEI | GGTNACC | 1 cut(s) | 398 |
| PspGI | CCWGG | 1 cut(s) | 60 |
| PspN4I | GGNNCC | 3 cut(s) | 140, 170, 252 |
| PspPI | GGNCC | 6 cut(s) | 139, 168, 181, 211, 232, 700 |
| PspPPI | RGGWCCY | 2 cut(s) | 139, 181 |
| PspXI | VCTCGAGB | 1 cut(s) | 579 |
| PstI | CTGCAG | 1 cut(s) | 541 |
| PsuI | RGATCY | 2 cut(s) | 147, 783 |
| PvuI | CGATCG | 1 cut(s) | 121 |
| RruI | TCGCGA | 1 cut(s) | 105 |
| RsaI | GTAC | 1 cut(s) | 748 |
| RsaNI | GTAC | 1 cut(s) | 747 |
| SacII | CCGCGG | 1 cut(s) | 639 |
| SaqAI | TTAA | 1 cut(s) | 456 |
| SatI | GCNGC | 6 cut(s) | 76, 276, 342, 345, 523, 537 |
| Sau3AI | GATC | 4 cut(s) | 118, 147, 772, 783 |
| Sau96I | GGNCC | 6 cut(s) | 139, 168, 181, 211, 232, 700 |
| SchI | GAGTC | 4 cut(s) | 101, 566, 667, 761 |
| ScrFI | CCNGG | 2 cut(s) | 62, 690 |
| SfaNI | GCATC | 1 cut(s) | 107 |
| SfcI | CTRYAG | 1 cut(s) | 537 |
| Sfr274I | CTCGAG | 1 cut(s) | 579 |
| Sfr303I | CCGCGG | 1 cut(s) | 639 |
| SfuI | TTCGAA | 1 cut(s) | 282 |
| SgrBI | CCGCGG | 1 cut(s) | 639 |
| SinI | GGWCC | 3 cut(s) | 139, 168, 181 |
| SlaI | CTCGAG | 1 cut(s) | 579 |
| SmlI | CTYRAG | 3 cut(s) | 239, 306, 579 |
| SmoI | CTYRAG | 3 cut(s) | 239, 306, 579 |
| SsiI | CCGC | 9 cut(s) | 36, 42, 75, 395, 460, 523, 602, 636, 638 |
| SspMI | CTAG | 3 cut(s) | 51, 354, 365 |
| StyD4I | CCNGG | 2 cut(s) | 60, 688 |
| StyI | CCWWGG | 3 cut(s) | 207, 270, 703 |
| TaaI | ACNGT | 3 cut(s) | 404, 514, 626 |
| TaqI | TCGA | 5 cut(s) | 121, 201, 282, 325, 580 |
| TauI | GCSGC | 2 cut(s) | 78, 525 |
| TfiI | GAWTC | 2 cut(s) | 127, 467 |
| Tru1I | TTAA | 1 cut(s) | 456 |
| Tru9I | TTAA | 1 cut(s) | 456 |
| TscAI | CASTG | 2 cut(s) | 517, 766 |
| TseFI | GTSAC | 2 cut(s) | 226, 398 |
| TseI | GCWGC | 4 cut(s) | 275, 341, 344, 536 |
| Tsp45I | GTSAC | 2 cut(s) | 226, 398 |
| TspDTI | ATGAA | 2 cut(s) | 384, 731 |
| TspGWI | ACGGA | 3 cut(s) | 42, 160, 764 |
| TspRI | CASTG | 2 cut(s) | 517, 766 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 220 |
| VpaK11BI | GGWCC | 3 cut(s) | 139, 168, 181 |
| XbaI | TCTAGA | 1 cut(s) | 364 |
| XceI | RCATGY | 1 cut(s) | 522 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 214 |
| XhoI | CTCGAG | 1 cut(s) | 579 |
| XmiI | GTMKAC | 1 cut(s) | 621 |
| XmnI | GAANNNNTTC | 1 cut(s) | 321 |
| XspI | CTAG | 3 cut(s) | 51, 354, 365 |