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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 585 |
| AccBSI | CCGCTC | 1 cut(s) | 213 |
| AccI | GTMKAC | 1 cut(s) | 79 |
| AccII | CGCG | 5 cut(s) | 128, 324, 500, 542, 575 |
| AccIII | TCCGGA | 1 cut(s) | 450 |
| AclWI | GGATC | 2 cut(s) | 464, 477 |
| AcoI | YGGCCR | 4 cut(s) | 133, 254, 262, 558 |
| AcsI | RAATTY | 1 cut(s) | 179 |
| AcyI | GRCGYC | 2 cut(s) | 50, 582 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 74, 115, 165, 233, 238, 466, 592 |
| AgsI | TTSAA | 2 cut(s) | 26, 296 |
| AluBI | AGCT | 2 cut(s) | 92, 153 |
| AluI | AGCT | 2 cut(s) | 92, 153 |
| Alw21I | GWGCWC | 1 cut(s) | 33 |
| AlwI | GGATC | 2 cut(s) | 464, 477 |
| Ama87I | CYCGRG | 1 cut(s) | 233 |
| Aor13HI | TCCGGA | 1 cut(s) | 450 |
| AoxI | GGCC | 5 cut(s) | 133, 254, 262, 558, 565 |
| ApaI | GGGCCC | 1 cut(s) | 569 |
| ApeKI | GCWGC | 2 cut(s) | 188, 207 |
| ApoI | RAATTY | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 355 |
| AspLEI | GCGC | 5 cut(s) | 125, 130, 207, 330, 544 |
| AspS9I | GGNCC | 2 cut(s) | 565, 566 |
| AsuC2I | CCSGG | 4 cut(s) | 132, 234, 235, 282 |
| AsuHPI | GGTGA | 1 cut(s) | 148 |
| AvaI | CYCGRG | 1 cut(s) | 233 |
| BaeGI | GKGCMC | 1 cut(s) | 569 |
| BamHI | GGATCC | 1 cut(s) | 469 |
| BanII | GRGCYC | 2 cut(s) | 569, 625 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 1 cut(s) | 33 |
| BbvI | GCAGC | 2 cut(s) | 175, 219 |
| BccI | CCATC | 2 cut(s) | 276, 371 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 77, 111, 205, 239 |
| BcnI | CCSGG | 4 cut(s) | 132, 234, 235, 282 |
| BfaI | CTAG | 2 cut(s) | 545, 628 |
| BfoI | RGCGCY | 1 cut(s) | 331 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 109 |
| Bme1390I | CCNGG | 4 cut(s) | 132, 234, 235, 282 |
| BmeT110I | CYCGRG | 1 cut(s) | 233 |
| BmgT120I | GGNCC | 2 cut(s) | 565, 566 |
| BmiI | GGNNCC | 4 cut(s) | 345, 471, 567, 568 |
| BmrFI | CCNGG | 4 cut(s) | 132, 234, 235, 282 |
| BmsI | GCATC | 2 cut(s) | 121, 381 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| BpuEI | CTTGAG | 2 cut(s) | 290, 516 |
| BpuMI | CCSGG | 4 cut(s) | 132, 234, 235, 282 |
| Bsa29I | ATCGAT | 1 cut(s) | 375 |
| BsaBI | GATNNNNATC | 1 cut(s) | 513 |
| BsaHI | GRCGYC | 2 cut(s) | 50, 582 |
| BsaJI | CCNNGG | 5 cut(s) | 232, 233, 281, 561, 591 |
| BsaWI | WCCGGW | 2 cut(s) | 173, 450 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 76, 106 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 74, 115, 165, 233, 238, 466, 592 |
| Bse118I | RCCGGY | 2 cut(s) | 108, 260 |
| Bse8I | GATNNNNATC | 1 cut(s) | 513 |
| BseAI | TCCGGA | 1 cut(s) | 450 |
| BseCI | ATCGAT | 1 cut(s) | 375 |
| BseDI | CCNNGG | 5 cut(s) | 232, 233, 281, 561, 591 |
| BseGI | GGATG | 1 cut(s) | 386 |
| BseJI | GATNNNNATC | 1 cut(s) | 513 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 74, 115, 165, 233, 238, 466, 592 |
| BseRI | GAGGAG | 3 cut(s) | 84, 352, 608 |
| BseSI | GKGCMC | 1 cut(s) | 569 |
| BseX3I | CGGCCG | 3 cut(s) | 133, 262, 558 |
| BseXI | GCAGC | 2 cut(s) | 175, 219 |
| BseYI | CCCAGC | 1 cut(s) | 104 |
| Bsh1236I | CGCG | 5 cut(s) | 128, 324, 500, 542, 575 |
| Bsh1285I | CGRYCG | 7 cut(s) | 136, 163, 174, 261, 265, 477, 561 |
| BshFI | GGCC | 5 cut(s) | 135, 256, 264, 560, 567 |
| BshVI | ATCGAT | 1 cut(s) | 375 |
| BsiEI | CGRYCG | 7 cut(s) | 136, 163, 174, 261, 265, 477, 561 |
| BsiHKAI | GWGCWC | 1 cut(s) | 33 |
| BsiHKCI | CYCGRG | 1 cut(s) | 233 |
| BsiSI | CCGG | 8 cut(s) | 109, 132, 166, 174, 234, 261, 281, 451 |
| BslFI | GGGAC | 1 cut(s) | 569 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 74, 115, 165, 233, 238, 466, 592 |
| BsmFI | GGGAC | 1 cut(s) | 569 |
| BsmI | GAATGC | 1 cut(s) | 444 |
| BsnI | GGCC | 5 cut(s) | 135, 256, 264, 560, 567 |
| BsoBI | CYCGRG | 1 cut(s) | 233 |
| Bsp120I | GGGCCC | 1 cut(s) | 565 |
| Bsp1286I | GDGCHC | 3 cut(s) | 33, 569, 625 |
| Bsp13I | TCCGGA | 1 cut(s) | 450 |
| Bsp143I | GATC | 4 cut(s) | 405, 469, 474, 508 |
| Bsp68I | TCGCGA | 2 cut(s) | 324, 575 |
| BspANI | GGCC | 5 cut(s) | 135, 256, 264, 560, 567 |
| BspDI | ATCGAT | 1 cut(s) | 375 |
| BspEI | TCCGGA | 1 cut(s) | 450 |
| BspFNI | CGCG | 5 cut(s) | 128, 324, 500, 542, 575 |
| BspLI | GGNNCC | 4 cut(s) | 345, 471, 567, 568 |
| BspPI | GGATC | 2 cut(s) | 464, 477 |
| BspQI | GCTCTTC | 1 cut(s) | 297 |
| BsrBI | CCGCTC | 1 cut(s) | 213 |
| BsrFI | RCCGGY | 2 cut(s) | 108, 260 |
| BssAI | RCCGGY | 2 cut(s) | 108, 260 |
| BssECI | CCNNGG | 5 cut(s) | 232, 233, 281, 561, 591 |
| BssMI | GATC | 4 cut(s) | 405, 469, 474, 508 |
| BssNI | GRCGYC | 2 cut(s) | 50, 582 |
| Bst6I | CTCTTC | 2 cut(s) | 297, 428 |
| BstACI | GRCGYC | 2 cut(s) | 50, 582 |
| BstF5I | GGATG | 1 cut(s) | 386 |
| BstFNI | CGCG | 5 cut(s) | 128, 324, 500, 542, 575 |
| BstH2I | RGCGCY | 1 cut(s) | 331 |
| BstHHI | GCGC | 5 cut(s) | 125, 130, 207, 330, 544 |
| BstKTI | GATC | 4 cut(s) | 408, 472, 477, 511 |
| BstMBI | GATC | 4 cut(s) | 405, 469, 474, 508 |
| BstMCI | CGRYCG | 7 cut(s) | 136, 163, 174, 261, 265, 477, 561 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 105, 109, 194, 207, 325, 624 |
| BstSCI | CCNGG | 4 cut(s) | 130, 232, 233, 280 |
| BstSLI | GKGCMC | 1 cut(s) | 569 |
| BstUI | CGCG | 5 cut(s) | 128, 324, 500, 542, 575 |
| BstV1I | GCAGC | 2 cut(s) | 175, 219 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstX2I | RGATCY | 1 cut(s) | 469 |
| BstYI | RGATCY | 1 cut(s) | 469 |
| BstZI | CGGCCG | 3 cut(s) | 133, 262, 558 |
| Bsu15I | ATCGAT | 1 cut(s) | 375 |
| BsuRI | GGCC | 5 cut(s) | 135, 256, 264, 560, 567 |
| BsuTUI | ATCGAT | 1 cut(s) | 375 |
| BtsCI | GGATG | 1 cut(s) | 386 |
| BtuMI | TCGCGA | 2 cut(s) | 324, 575 |
| CfoI | GCGC | 5 cut(s) | 125, 130, 207, 330, 544 |
| Cfr10I | RCCGGY | 2 cut(s) | 108, 260 |
| Cfr13I | GGNCC | 2 cut(s) | 565, 566 |
| Cfr9I | CCCGGG | 1 cut(s) | 233 |
| ClaI | ATCGAT | 1 cut(s) | 375 |
| CseI | GACGC | 3 cut(s) | 58, 463, 489 |
| CviAII | CATG | 1 cut(s) | 223 |
| DpnI | GATC | 4 cut(s) | 407, 471, 476, 510 |
| DpnII | GATC | 4 cut(s) | 405, 469, 474, 508 |
| EaeI | YGGCCR | 4 cut(s) | 133, 254, 262, 558 |
| EagI | CGGCCG | 3 cut(s) | 133, 262, 558 |
| Eam1104I | CTCTTC | 2 cut(s) | 297, 428 |
| EarI | CTCTTC | 2 cut(s) | 297, 428 |
| EclXI | CGGCCG | 3 cut(s) | 133, 262, 558 |
| Eco24I | GRGCYC | 2 cut(s) | 569, 625 |
| Eco52I | CGGCCG | 3 cut(s) | 133, 262, 558 |
| Eco88I | CYCGRG | 1 cut(s) | 233 |
| EcoO109I | RGGNCCY | 2 cut(s) | 565, 566 |
| EcoT38I | GRGCYC | 2 cut(s) | 569, 625 |
| FaeI | CATG | 1 cut(s) | 226 |
| FaiI | YATR | 3 cut(s) | 224, 276, 410 |
| FaqI | GGGAC | 1 cut(s) | 569 |
| FatI | CATG | 1 cut(s) | 222 |
| FauI | CCCGC | 5 cut(s) | 22, 206, 547, 595, 623 |
| FblI | GTMKAC | 1 cut(s) | 79 |
| FokI | GGATG | 1 cut(s) | 373 |
| FriOI | GRGCYC | 2 cut(s) | 569, 625 |
| FspBI | CTAG | 2 cut(s) | 545, 628 |
| GlaI | GCGC | 5 cut(s) | 124, 129, 206, 329, 543 |
| GsaI | CCCAGC | 1 cut(s) | 108 |
| HaeII | RGCGCY | 1 cut(s) | 331 |
| HaeIII | GGCC | 5 cut(s) | 135, 256, 264, 560, 567 |
| HapII | CCGG | 8 cut(s) | 109, 132, 166, 174, 234, 261, 281, 451 |
| HgaI | GACGC | 3 cut(s) | 58, 463, 489 |
| HhaI | GCGC | 5 cut(s) | 125, 130, 207, 330, 544 |
| Hin1I | GRCGYC | 2 cut(s) | 50, 582 |
| Hin1II | CATG | 1 cut(s) | 226 |
| Hin6I | GCGC | 5 cut(s) | 123, 128, 205, 328, 542 |
| HinP1I | GCGC | 5 cut(s) | 123, 128, 205, 328, 542 |
| HincII | GTYRAC | 1 cut(s) | 80 |
| HindII | GTYRAC | 1 cut(s) | 80 |
| HpaII | CCGG | 8 cut(s) | 109, 132, 166, 174, 234, 261, 281, 451 |
| HphI | GGTGA | 1 cut(s) | 148 |
| Hpy166II | GTNNAC | 2 cut(s) | 80, 550 |
| Hpy188I | TCNGA | 1 cut(s) | 474 |
| Hpy188III | TCNNGA | 8 cut(s) | 43, 116, 307, 323, 451, 518, 533, 574 |
| Hpy8I | GTNNAC | 2 cut(s) | 80, 550 |
| Hpy99I | CGWCG | 2 cut(s) | 372, 575 |
| HpyAV | CCTTC | 3 cut(s) | 232, 280, 457 |
| HpyCH4IV | ACGT | 1 cut(s) | 582 |
| HpyCH4V | TGCA | 1 cut(s) | 442 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 105, 109, 194, 207, 325, 624 |
| HpySE526I | ACGT | 1 cut(s) | 582 |
| Hsp92I | GRCGYC | 2 cut(s) | 50, 582 |
| Hsp92II | CATG | 1 cut(s) | 226 |
| HspAI | GCGC | 5 cut(s) | 123, 128, 205, 328, 542 |
| Kpn2I | TCCGGA | 1 cut(s) | 450 |
| KroI | GCCGGC | 1 cut(s) | 108 |
| KroNI | GCCGGC | 1 cut(s) | 110 |
| Kzo9I | GATC | 4 cut(s) | 405, 469, 474, 508 |
| LguI | GCTCTTC | 1 cut(s) | 297 |
| LmnI | GCTCC | 1 cut(s) | 97 |
| LpnPI | CCDG | 9 cut(s) | 118, 122, 145, 179, 187, 247, 274, 294, 464 |
| Lsp1109I | GCAGC | 2 cut(s) | 175, 219 |
| LweI | GCATC | 2 cut(s) | 121, 381 |
| MaeI | CTAG | 2 cut(s) | 545, 628 |
| MaeII | ACGT | 1 cut(s) | 582 |
| MaeIII | GTNAC | 2 cut(s) | 501, 578 |
| MalI | GATC | 4 cut(s) | 407, 471, 476, 510 |
| MbiI | CCGCTC | 1 cut(s) | 213 |
| MboI | GATC | 4 cut(s) | 405, 469, 474, 508 |
| MboII | GAAGA | 4 cut(s) | 58, 284, 348, 445 |
| MflI | RGATCY | 1 cut(s) | 469 |
| MhlI | GDGCHC | 3 cut(s) | 33, 569, 625 |
| MluCI | AATT | 1 cut(s) | 179 |
| MroI | TCCGGA | 1 cut(s) | 450 |
| MroNI | GCCGGC | 1 cut(s) | 108 |
| MroXI | GAANNNNTTC | 1 cut(s) | 355 |
| MspA1I | CMGCKG | 1 cut(s) | 17 |
| MspI | CCGG | 8 cut(s) | 109, 132, 166, 174, 234, 261, 281, 451 |
| MspR9I | CCNGG | 4 cut(s) | 132, 234, 235, 282 |
| MteI | GCGCNGCGC | 1 cut(s) | 126 |
| Mva1269I | GAATGC | 1 cut(s) | 444 |
| MvnI | CGCG | 5 cut(s) | 128, 324, 500, 542, 575 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 105, 109, 194, 207, 325, 624 |
| NaeI | GCCGGC | 1 cut(s) | 110 |
| NciI | CCSGG | 4 cut(s) | 132, 234, 235, 282 |
| NdeII | GATC | 4 cut(s) | 405, 469, 474, 508 |
| NgoMIV | GCCGGC | 1 cut(s) | 108 |
| NlaIII | CATG | 1 cut(s) | 226 |
| NlaIV | GGNNCC | 4 cut(s) | 345, 471, 567, 568 |
| NmeAIII | GCCGAG | 2 cut(s) | 586, 616 |
| NmuCI | GTSAC | 2 cut(s) | 501, 578 |
| NruI | TCGCGA | 2 cut(s) | 324, 575 |
| PciSI | GCTCTTC | 1 cut(s) | 297 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 504, 558, 579, 588, 606 |
| PctI | GAATGC | 1 cut(s) | 444 |
| PdiI | GCCGGC | 1 cut(s) | 110 |
| PdmI | GAANNNNTTC | 1 cut(s) | 355 |
| Ple19I | CGATCG | 1 cut(s) | 477 |
| PspFI | CCCAGC | 1 cut(s) | 104 |
| PspN4I | GGNNCC | 4 cut(s) | 345, 471, 567, 568 |
| PspOMI | GGGCCC | 1 cut(s) | 565 |
| PspPI | GGNCC | 2 cut(s) | 565, 566 |
| PsuI | RGATCY | 1 cut(s) | 469 |
| PvuI | CGATCG | 1 cut(s) | 477 |
| RruI | TCGCGA | 2 cut(s) | 324, 575 |
| SalI | GTCGAC | 1 cut(s) | 78 |
| SapI | GCTCTTC | 1 cut(s) | 297 |
| Sau3AI | GATC | 4 cut(s) | 405, 469, 474, 508 |
| Sau96I | GGNCC | 2 cut(s) | 565, 566 |
| ScrFI | CCNGG | 4 cut(s) | 132, 234, 235, 282 |
| SduI | GDGCHC | 3 cut(s) | 33, 569, 625 |
| SetI | ASST | 6 cut(s) | 85, 94, 155, 349, 585, 600 |
| SfaNI | GCATC | 2 cut(s) | 121, 381 |
| SmaI | CCCGGG | 1 cut(s) | 235 |
| SmlI | CTYRAG | 2 cut(s) | 305, 531 |
| SmoI | CTYRAG | 2 cut(s) | 305, 531 |
| Sse9I | AATT | 1 cut(s) | 179 |
| SspMI | CTAG | 2 cut(s) | 545, 628 |
| StyD4I | CCNGG | 4 cut(s) | 130, 232, 233, 280 |
| TaiI | ACGT | 1 cut(s) | 585 |
| TaqI | TCGA | 9 cut(s) | 44, 62, 79, 215, 349, 375, 422, 465, 507 |
| TasI | AATT | 1 cut(s) | 179 |
| TauI | GCSGC | 8 cut(s) | 128, 138, 141, 213, 267, 482, 605, 608 |
| TseFI | GTSAC | 2 cut(s) | 501, 578 |
| TseI | GCWGC | 2 cut(s) | 188, 207 |
| Tsp45I | GTSAC | 2 cut(s) | 501, 578 |
| TspDTI | ATGAA | 4 cut(s) | 17, 260, 375, 440 |
| TspGWI | ACGGA | 1 cut(s) | 445 |
| TspMI | CCCGGG | 1 cut(s) | 233 |
| XapI | RAATTY | 1 cut(s) | 179 |
| XmaI | CCCGGG | 1 cut(s) | 233 |
| XmiI | GTMKAC | 1 cut(s) | 79 |
| XmnI | GAANNNNTTC | 1 cut(s) | 355 |
| XspI | CTAG | 2 cut(s) | 545, 628 |
| ZraI | GACGTC | 1 cut(s) | 583 |