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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 5 cut(s) | 23, 102, 191, 269, 330 |
| AciI | CCGC | 5 cut(s) | 23, 100, 257, 267, 328 |
| AclWI | GGATC | 3 cut(s) | 47, 60, 486 |
| AcuI | CTGAAG | 1 cut(s) | 395 |
| AfaI | GTAC | 1 cut(s) | 212 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 124, 403, 557 |
| AjnI | CCWGG | 5 cut(s) | 121, 275, 285, 432, 474 |
| AluBI | AGCT | 3 cut(s) | 367, 515, 569 |
| AluI | AGCT | 3 cut(s) | 367, 515, 569 |
| AlwI | GGATC | 3 cut(s) | 47, 60, 486 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 17, 515 |
| AoxI | GGCC | 8 cut(s) | 96, 148, 166, 258, 273, 300, 348, 414 |
| ApaI | GGGCCC | 1 cut(s) | 170 |
| ApeKI | GCWGC | 3 cut(s) | 220, 223, 515 |
| AscI | GGCGCGCC | 1 cut(s) | 189 |
| AseI | ATTAAT | 1 cut(s) | 422 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 3 cut(s) | 191, 193, 271 |
| AspS9I | GGNCC | 9 cut(s) | 97, 166, 167, 259, 301, 348, 393, 406, 415 |
| AsuHPI | GGTGA | 1 cut(s) | 353 |
| AsuNHI | GCTAGC | 1 cut(s) | 373 |
| AvaII | GGWCC | 2 cut(s) | 393, 406 |
| AxyI | CCTNAGG | 1 cut(s) | 215 |
| BaeGI | GKGCMC | 1 cut(s) | 170 |
| BamHI | GGATCC | 1 cut(s) | 52 |
| BanII | GRGCYC | 1 cut(s) | 170 |
| BbvI | GCAGC | 3 cut(s) | 207, 210, 502 |
| BccI | CCATC | 1 cut(s) | 548 |
| BciT130I | CCWGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| BfaI | CTAG | 3 cut(s) | 206, 374, 574 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 165 |
| BglII | AGATCT | 1 cut(s) | 229 |
| BisI | GCNGC | 4 cut(s) | 221, 224, 258, 516 |
| BlpI | GCTNAGC | 1 cut(s) | 546 |
| BlsI | GCNGC | 4 cut(s) | 222, 225, 259, 517 |
| Bme1390I | CCNGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| Bme18I | GGWCC | 2 cut(s) | 393, 406 |
| BmgT120I | GGNCC | 9 cut(s) | 97, 166, 167, 259, 301, 348, 393, 406, 415 |
| BmiI | GGNNCC | 7 cut(s) | 27, 39, 54, 168, 261, 395, 438 |
| BmrFI | CCNGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| BmtI | GCTAGC | 1 cut(s) | 377 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 546 |
| BpuEI | CTTGAG | 3 cut(s) | 53, 64, 217 |
| BsaJI | CCNNGG | 4 cut(s) | 122, 184, 285, 519 |
| BsaWI | WCCGGW | 1 cut(s) | 390 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 124, 403, 557 |
| Bse21I | CCTNAGG | 1 cut(s) | 215 |
| BseBI | CCWGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| BseDI | CCNNGG | 4 cut(s) | 122, 184, 285, 519 |
| BseGI | GGATG | 1 cut(s) | 559 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 124, 403, 557 |
| BseMII | CTCAG | 2 cut(s) | 206, 537 |
| BsePI | GCGCGC | 1 cut(s) | 189 |
| BseSI | GKGCMC | 1 cut(s) | 170 |
| BseXI | GCAGC | 3 cut(s) | 207, 210, 502 |
| BseYI | CCCAGC | 1 cut(s) | 565 |
| Bsh1236I | CGCG | 5 cut(s) | 23, 102, 191, 269, 330 |
| Bsh1285I | CGRYCG | 1 cut(s) | 267 |
| BshFI | GGCC | 8 cut(s) | 98, 150, 168, 260, 275, 302, 350, 416 |
| BsiEI | CGRYCG | 1 cut(s) | 267 |
| BsiSI | CCGG | 2 cut(s) | 391, 551 |
| BslFI | GGGAC | 2 cut(s) | 101, 379 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 124, 403, 557 |
| BsmFI | GGGAC | 2 cut(s) | 101, 379 |
| BsnI | GGCC | 8 cut(s) | 98, 150, 168, 260, 275, 302, 350, 416 |
| Bsp120I | GGGCCC | 1 cut(s) | 166 |
| Bsp1286I | GDGCHC | 1 cut(s) | 170 |
| Bsp143I | GATC | 4 cut(s) | 52, 229, 343, 478 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 546 |
| BspACI | CCGC | 5 cut(s) | 23, 100, 257, 267, 328 |
| BspANI | GGCC | 8 cut(s) | 98, 150, 168, 260, 275, 302, 350, 416 |
| BspCNI | CTCAG | 2 cut(s) | 207, 538 |
| BspFNI | CGCG | 5 cut(s) | 23, 102, 191, 269, 330 |
| BspLI | GGNNCC | 7 cut(s) | 27, 39, 54, 168, 261, 395, 438 |
| BspOI | GCTAGC | 1 cut(s) | 377 |
| BspPI | GGATC | 3 cut(s) | 47, 60, 486 |
| BssECI | CCNNGG | 4 cut(s) | 122, 184, 285, 519 |
| BssHII | GCGCGC | 1 cut(s) | 189 |
| BssMI | GATC | 4 cut(s) | 52, 229, 343, 478 |
| BssT1I | CCWWGG | 1 cut(s) | 519 |
| Bst2UI | CCWGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 515 |
| BstC8I | GCNNGC | 6 cut(s) | 96, 100, 104, 191, 273, 375 |
| BstDEI | CTNAG | 2 cut(s) | 215, 546 |
| BstF5I | GGATG | 1 cut(s) | 559 |
| BstFNI | CGCG | 5 cut(s) | 23, 102, 191, 269, 330 |
| BstHHI | GCGC | 3 cut(s) | 191, 193, 271 |
| BstKTI | GATC | 4 cut(s) | 55, 232, 346, 481 |
| BstMBI | GATC | 4 cut(s) | 52, 229, 343, 478 |
| BstMCI | CGRYCG | 1 cut(s) | 267 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 44, 156, 165, 266, 277, 515 |
| BstNI | CCWGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| BstSCI | CCNGG | 5 cut(s) | 121, 275, 285, 432, 474 |
| BstSLI | GKGCMC | 1 cut(s) | 170 |
| BstUI | CGCG | 5 cut(s) | 23, 102, 191, 269, 330 |
| BstV1I | GCAGC | 3 cut(s) | 207, 210, 502 |
| BstX2I | RGATCY | 2 cut(s) | 52, 229 |
| BstYI | RGATCY | 2 cut(s) | 52, 229 |
| Bsu36I | CCTNAGG | 1 cut(s) | 215 |
| BsuRI | GGCC | 8 cut(s) | 98, 150, 168, 260, 275, 302, 350, 416 |
| BtgZI | GCGATG | 1 cut(s) | 140 |
| BtsCI | GGATG | 1 cut(s) | 559 |
| Cac8I | GCNNGC | 6 cut(s) | 96, 100, 104, 191, 273, 375 |
| CaiI | CAGNNNCTG | 2 cut(s) | 17, 515 |
| CfoI | GCGC | 3 cut(s) | 191, 193, 271 |
| Cfr13I | GGNCC | 9 cut(s) | 97, 166, 167, 259, 301, 348, 393, 406, 415 |
| CseI | GACGC | 1 cut(s) | 379 |
| CsiI | ACCWGGT | 1 cut(s) | 432 |
| Csp6I | GTAC | 1 cut(s) | 211 |
| CviAII | CATG | 2 cut(s) | 5, 542 |
| CviQI | GTAC | 1 cut(s) | 211 |
| DdeI | CTNAG | 2 cut(s) | 215, 546 |
| DpnI | GATC | 4 cut(s) | 54, 231, 345, 480 |
| DpnII | GATC | 4 cut(s) | 52, 229, 343, 478 |
| Eco130I | CCWWGG | 1 cut(s) | 519 |
| Eco147I | AGGCCT | 1 cut(s) | 150 |
| Eco24I | GRGCYC | 1 cut(s) | 170 |
| Eco47I | GGWCC | 2 cut(s) | 393, 406 |
| Eco57I | CTGAAG | 1 cut(s) | 395 |
| Eco81I | CCTNAGG | 1 cut(s) | 215 |
| EcoO109I | RGGNCCY | 3 cut(s) | 167, 301, 406 |
| EcoRII | CCWGG | 5 cut(s) | 121, 275, 285, 432, 474 |
| EcoT14I | CCWWGG | 1 cut(s) | 519 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 170 |
| ErhI | CCWWGG | 1 cut(s) | 519 |
| FaeI | CATG | 2 cut(s) | 8, 545 |
| FaiI | YATR | 2 cut(s) | 6, 543 |
| FaqI | GGGAC | 2 cut(s) | 101, 379 |
| FatI | CATG | 2 cut(s) | 4, 541 |
| FauI | CCCGC | 2 cut(s) | 107, 335 |
| Fnu4HI | GCNGC | 4 cut(s) | 221, 224, 258, 516 |
| FokI | GGATG | 1 cut(s) | 566 |
| FriOI | GRGCYC | 1 cut(s) | 170 |
| Fsp4HI | GCNGC | 4 cut(s) | 221, 224, 258, 516 |
| FspBI | CTAG | 3 cut(s) | 206, 374, 574 |
| GlaI | GCGC | 3 cut(s) | 190, 192, 270 |
| GluI | GCNGC | 4 cut(s) | 221, 224, 258, 516 |
| GsaI | CCCAGC | 1 cut(s) | 569 |
| HaeIII | GGCC | 8 cut(s) | 98, 150, 168, 260, 275, 302, 350, 416 |
| HapII | CCGG | 2 cut(s) | 391, 551 |
| HgaI | GACGC | 1 cut(s) | 379 |
| HhaI | GCGC | 3 cut(s) | 191, 193, 271 |
| Hin1II | CATG | 2 cut(s) | 8, 545 |
| Hin6I | GCGC | 3 cut(s) | 189, 191, 269 |
| HinP1I | GCGC | 3 cut(s) | 189, 191, 269 |
| HinfI | GANTC | 3 cut(s) | 201, 332, 400 |
| HpaII | CCGG | 2 cut(s) | 391, 551 |
| HphI | GGTGA | 1 cut(s) | 353 |
| Hpy188I | TCNGA | 3 cut(s) | 180, 315, 483 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 81, 404 |
| HpyAV | CCTTC | 4 cut(s) | 140, 161, 247, 419 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 226 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 44, 156, 165, 266, 277, 515 |
| HpyF3I | CTNAG | 2 cut(s) | 215, 546 |
| Hsp92II | CATG | 2 cut(s) | 8, 545 |
| HspAI | GCGC | 3 cut(s) | 189, 191, 269 |
| Kzo9I | GATC | 4 cut(s) | 52, 229, 343, 478 |
| LmnI | GCTCC | 4 cut(s) | 25, 43, 364, 496 |
| Lsp1109I | GCAGC | 3 cut(s) | 207, 210, 502 |
| MabI | ACCWGGT | 1 cut(s) | 432 |
| MaeI | CTAG | 3 cut(s) | 206, 374, 574 |
| MalI | GATC | 4 cut(s) | 54, 231, 345, 480 |
| MboI | GATC | 4 cut(s) | 52, 229, 343, 478 |
| MboII | GAAGA | 1 cut(s) | 224 |
| MflI | RGATCY | 2 cut(s) | 52, 229 |
| MhlI | GDGCHC | 1 cut(s) | 170 |
| MluCI | AATT | 4 cut(s) | 322, 419, 423, 525 |
| MlyI | GAGTC | 2 cut(s) | 210, 326 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 4 cut(s) | 108, 422, 426, 462 |
| MspA1I | CMGCKG | 1 cut(s) | 569 |
| MspI | CCGG | 2 cut(s) | 391, 551 |
| MspR9I | CCNGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| MvaI | CCWGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| MvnI | CGCG | 5 cut(s) | 23, 102, 191, 269, 330 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 44, 156, 165, 266, 277, 515 |
| NdeII | GATC | 4 cut(s) | 52, 229, 343, 478 |
| NheI | GCTAGC | 1 cut(s) | 373 |
| NlaIII | CATG | 2 cut(s) | 8, 545 |
| NlaIV | GGNNCC | 7 cut(s) | 27, 39, 54, 168, 261, 395, 438 |
| NmeAIII | GCCGAG | 1 cut(s) | 165 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PacI | TTAATTAA | 1 cut(s) | 426 |
| PalAI | GGCGCGCC | 1 cut(s) | 189 |
| PauI | GCGCGC | 1 cut(s) | 189 |
| PceI | AGGCCT | 1 cut(s) | 150 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 400 |
| PfoI | TCCNGGA | 1 cut(s) | 474 |
| PkrI | GCNGC | 4 cut(s) | 222, 225, 259, 517 |
| PleI | GAGTC | 2 cut(s) | 209, 326 |
| PpsI | GAGTC | 2 cut(s) | 209, 326 |
| PpuMI | RGGWCCY | 1 cut(s) | 406 |
| PshBI | ATTAAT | 1 cut(s) | 422 |
| Psp5II | RGGWCCY | 1 cut(s) | 406 |
| Psp6I | CCWGG | 5 cut(s) | 121, 275, 285, 432, 474 |
| PspFI | CCCAGC | 1 cut(s) | 565 |
| PspGI | CCWGG | 5 cut(s) | 121, 275, 285, 432, 474 |
| PspN4I | GGNNCC | 7 cut(s) | 27, 39, 54, 168, 261, 395, 438 |
| PspOMI | GGGCCC | 1 cut(s) | 166 |
| PspPI | GGNCC | 9 cut(s) | 97, 166, 167, 259, 301, 348, 393, 406, 415 |
| PspPPI | RGGWCCY | 1 cut(s) | 406 |
| PstNI | CAGNNNCTG | 2 cut(s) | 17, 515 |
| PsuI | RGATCY | 2 cut(s) | 52, 229 |
| PteI | GCGCGC | 1 cut(s) | 189 |
| PvuII | CAGCTG | 1 cut(s) | 569 |
| RsaI | GTAC | 1 cut(s) | 212 |
| RsaNI | GTAC | 1 cut(s) | 211 |
| SaqAI | TTAA | 4 cut(s) | 108, 422, 426, 462 |
| SatI | GCNGC | 4 cut(s) | 221, 224, 258, 516 |
| Sau3AI | GATC | 4 cut(s) | 52, 229, 343, 478 |
| Sau96I | GGNCC | 9 cut(s) | 97, 166, 167, 259, 301, 348, 393, 406, 415 |
| SchI | GAGTC | 2 cut(s) | 210, 326 |
| ScrFI | CCNGG | 5 cut(s) | 123, 277, 287, 434, 476 |
| SduI | GDGCHC | 1 cut(s) | 170 |
| SexAI | ACCWGGT | 1 cut(s) | 432 |
| SgsI | GGCGCGCC | 1 cut(s) | 189 |
| SinI | GGWCC | 2 cut(s) | 393, 406 |
| SmlI | CTYRAG | 3 cut(s) | 32, 79, 196 |
| SmoI | CTYRAG | 3 cut(s) | 32, 79, 196 |
| Sse9I | AATT | 4 cut(s) | 322, 419, 423, 525 |
| SseBI | AGGCCT | 1 cut(s) | 150 |
| SsiI | CCGC | 5 cut(s) | 23, 100, 257, 267, 328 |
| SspMI | CTAG | 3 cut(s) | 206, 374, 574 |
| StuI | AGGCCT | 1 cut(s) | 150 |
| StyD4I | CCNGG | 5 cut(s) | 121, 275, 285, 432, 474 |
| StyI | CCWWGG | 1 cut(s) | 519 |
| TasI | AATT | 4 cut(s) | 322, 419, 423, 525 |
| TauI | GCSGC | 1 cut(s) | 260 |
| TfiI | GAWTC | 1 cut(s) | 400 |
| Tru1I | TTAA | 4 cut(s) | 108, 422, 426, 462 |
| Tru9I | TTAA | 4 cut(s) | 108, 422, 426, 462 |
| TseI | GCWGC | 3 cut(s) | 220, 223, 515 |
| TspDTI | ATGAA | 1 cut(s) | 143 |
| VpaK11BI | GGWCC | 2 cut(s) | 393, 406 |
| VspI | ATTAAT | 1 cut(s) | 422 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 3 cut(s) | 206, 374, 574 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |