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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 22 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 193 |
| AccII | CGCG | 3 cut(s) | 14, 51, 207 |
| AciI | CCGC | 6 cut(s) | 12, 14, 18, 51, 224, 287 |
| AcoI | YGGCCR | 1 cut(s) | 15 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 193 |
| AjnI | CCWGG | 2 cut(s) | 26, 192 |
| AluBI | AGCT | 1 cut(s) | 249 |
| AluI | AGCT | 1 cut(s) | 249 |
| Alw21I | GWGCWC | 1 cut(s) | 267 |
| AoxI | GGCC | 6 cut(s) | 15, 24, 52, 102, 123, 279 |
| ApeKI | GCWGC | 2 cut(s) | 233, 236 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 213 |
| AspLEI | GCGC | 2 cut(s) | 136, 172 |
| AspS9I | GGNCC | 4 cut(s) | 73, 103, 124, 280 |
| AsuNHI | GCTAGC | 1 cut(s) | 245 |
| AvaII | GGWCC | 1 cut(s) | 73 |
| Bbv12I | GWGCWC | 1 cut(s) | 267 |
| BbvI | GCAGC | 2 cut(s) | 220, 223 |
| BceAI | ACGGC | 3 cut(s) | 138, 183, 197 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 254, 288 |
| BciT130I | CCWGG | 2 cut(s) | 28, 194 |
| BfaI | CTAG | 2 cut(s) | 173, 246 |
| BfoI | RGCGCY | 1 cut(s) | 173 |
| BfuAI | ACCTGC | 1 cut(s) | 22 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 23, 131 |
| BisI | GCNGC | 5 cut(s) | 15, 18, 52, 234, 237 |
| BlsI | GCNGC | 5 cut(s) | 16, 19, 53, 235, 238 |
| Bme1390I | CCNGG | 2 cut(s) | 28, 194 |
| Bme18I | GGWCC | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 4 cut(s) | 73, 103, 124, 280 |
| BmiI | GGNNCC | 1 cut(s) | 144 |
| BmrFI | CCNGG | 2 cut(s) | 28, 194 |
| BmtI | GCTAGC | 1 cut(s) | 249 |
| BpuEI | CTTGAG | 1 cut(s) | 183 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 99 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 193 |
| Bse1I | ACTGG | 1 cut(s) | 135 |
| BseBI | CCWGG | 2 cut(s) | 28, 194 |
| BseDI | CCNNGG | 2 cut(s) | 12, 99 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 193 |
| BseMII | CTCAG | 1 cut(s) | 161 |
| BseNI | ACTGG | 1 cut(s) | 135 |
| BseRI | GAGGAG | 1 cut(s) | 155 |
| BseX3I | CGGCCG | 1 cut(s) | 15 |
| BseXI | GCAGC | 2 cut(s) | 220, 223 |
| Bsh1236I | CGCG | 3 cut(s) | 14, 51, 207 |
| Bsh1285I | CGRYCG | 2 cut(s) | 12, 18 |
| BshFI | GGCC | 6 cut(s) | 17, 26, 54, 104, 125, 281 |
| BsiEI | CGRYCG | 2 cut(s) | 12, 18 |
| BsiHKAI | GWGCWC | 1 cut(s) | 267 |
| BslFI | GGGAC | 1 cut(s) | 169 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 193 |
| BsmFI | GGGAC | 1 cut(s) | 169 |
| BsnI | GGCC | 6 cut(s) | 17, 26, 54, 104, 125, 281 |
| Bsp1286I | GDGCHC | 1 cut(s) | 267 |
| BspACI | CCGC | 6 cut(s) | 12, 14, 18, 51, 224, 287 |
| BspANI | GGCC | 6 cut(s) | 17, 26, 54, 104, 125, 281 |
| BspCNI | CTCAG | 1 cut(s) | 160 |
| BspFNI | CGCG | 3 cut(s) | 14, 51, 207 |
| BspLI | GGNNCC | 1 cut(s) | 144 |
| BspMI | ACCTGC | 1 cut(s) | 22 |
| BspOI | GCTAGC | 1 cut(s) | 249 |
| BsrI | ACTGG | 1 cut(s) | 135 |
| BssECI | CCNNGG | 2 cut(s) | 12, 99 |
| BssT1I | CCWWGG | 1 cut(s) | 99 |
| Bst2UI | CCWGG | 2 cut(s) | 28, 194 |
| Bst4CI | ACNGT | 1 cut(s) | 118 |
| BstC8I | GCNNGC | 3 cut(s) | 205, 231, 247 |
| BstDEI | CTNAG | 1 cut(s) | 147 |
| BstDSI | CCRYGG | 1 cut(s) | 12 |
| BstFNI | CGCG | 3 cut(s) | 14, 51, 207 |
| BstH2I | RGCGCY | 1 cut(s) | 173 |
| BstHHI | GCGC | 2 cut(s) | 136, 172 |
| BstMCI | CGRYCG | 2 cut(s) | 12, 18 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 23, 65, 131, 142, 176, 209, 230, 242 |
| BstNI | CCWGG | 2 cut(s) | 28, 194 |
| BstSCI | CCNGG | 2 cut(s) | 26, 192 |
| BstUI | CGCG | 3 cut(s) | 14, 51, 207 |
| BstV1I | GCAGC | 2 cut(s) | 220, 223 |
| BstZI | CGGCCG | 1 cut(s) | 15 |
| BsuRI | GGCC | 6 cut(s) | 17, 26, 54, 104, 125, 281 |
| BtgI | CCRYGG | 1 cut(s) | 12 |
| BtgZI | GCGATG | 1 cut(s) | 194 |
| BveI | ACCTGC | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 3 cut(s) | 205, 231, 247 |
| CciNI | GCGGCCGC | 1 cut(s) | 15 |
| CfoI | GCGC | 2 cut(s) | 136, 172 |
| Cfr13I | GGNCC | 4 cut(s) | 73, 103, 124, 280 |
| Cfr42I | CCGCGG | 1 cut(s) | 15 |
| CseI | GACGC | 1 cut(s) | 251 |
| CviAII | CATG | 1 cut(s) | 284 |
| DdeI | CTNAG | 1 cut(s) | 147 |
| EaeI | YGGCCR | 1 cut(s) | 15 |
| EagI | CGGCCG | 1 cut(s) | 15 |
| EclXI | CGGCCG | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 1 cut(s) | 99 |
| Eco47I | GGWCC | 1 cut(s) | 73 |
| Eco52I | CGGCCG | 1 cut(s) | 15 |
| EcoO109I | RGGNCCY | 1 cut(s) | 73 |
| EcoRII | CCWGG | 2 cut(s) | 26, 192 |
| EcoT14I | CCWWGG | 1 cut(s) | 99 |
| ErhI | CCWWGG | 1 cut(s) | 99 |
| FaeI | CATG | 1 cut(s) | 287 |
| FaiI | YATR | 1 cut(s) | 285 |
| FaqI | GGGAC | 1 cut(s) | 169 |
| FatI | CATG | 1 cut(s) | 283 |
| FauI | CCCGC | 1 cut(s) | 280 |
| Fnu4HI | GCNGC | 5 cut(s) | 15, 18, 52, 234, 237 |
| Fsp4HI | GCNGC | 5 cut(s) | 15, 18, 52, 234, 237 |
| FspBI | CTAG | 2 cut(s) | 173, 246 |
| GlaI | GCGC | 2 cut(s) | 135, 171 |
| GluI | GCNGC | 5 cut(s) | 15, 18, 52, 234, 237 |
| HaeII | RGCGCY | 1 cut(s) | 173 |
| HaeIII | GGCC | 6 cut(s) | 17, 26, 54, 104, 125, 281 |
| HgaI | GACGC | 1 cut(s) | 251 |
| HhaI | GCGC | 2 cut(s) | 136, 172 |
| Hin1II | CATG | 1 cut(s) | 287 |
| Hin6I | GCGC | 2 cut(s) | 134, 170 |
| HinP1I | GCGC | 2 cut(s) | 134, 170 |
| Hpy166II | GTNNAC | 1 cut(s) | 43 |
| Hpy188I | TCNGA | 1 cut(s) | 150 |
| Hpy188III | TCNNGA | 1 cut(s) | 257 |
| Hpy8I | GTNNAC | 1 cut(s) | 43 |
| Hpy99I | CGWCG | 1 cut(s) | 245 |
| HpyCH4III | ACNGT | 1 cut(s) | 118 |
| HpyCH4V | TGCA | 1 cut(s) | 59 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 23, 65, 131, 142, 176, 209, 230, 242 |
| HpyF3I | CTNAG | 1 cut(s) | 147 |
| Hsp92II | CATG | 1 cut(s) | 287 |
| HspAI | GCGC | 2 cut(s) | 134, 170 |
| KspI | CCGCGG | 1 cut(s) | 15 |
| LmnI | GCTCC | 2 cut(s) | 142, 226 |
| LpnPI | CCDG | 9 cut(s) | 8, 13, 17, 23, 40, 116, 179, 206, 242 |
| Lsp1109I | GCAGC | 2 cut(s) | 220, 223 |
| MaeI | CTAG | 2 cut(s) | 173, 246 |
| MaeIII | GTNAC | 2 cut(s) | 112, 118 |
| MhlI | GDGCHC | 1 cut(s) | 267 |
| MluCI | AATT | 1 cut(s) | 107 |
| MnlI | CCTC | 5 cut(s) | 64, 86, 133, 156, 169 |
| MroXI | GAANNNNTTC | 1 cut(s) | 213 |
| MseI | TTAA | 1 cut(s) | 164 |
| MspA1I | CMGCKG | 1 cut(s) | 14 |
| MspR9I | CCNGG | 2 cut(s) | 28, 194 |
| MvaI | CCWGG | 2 cut(s) | 28, 194 |
| MvnI | CGCG | 3 cut(s) | 14, 51, 207 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 23, 65, 131, 142, 176, 209, 230, 242 |
| NheI | GCTAGC | 1 cut(s) | 245 |
| NlaIII | CATG | 1 cut(s) | 287 |
| NlaIV | GGNNCC | 1 cut(s) | 144 |
| NmuCI | GTSAC | 2 cut(s) | 112, 118 |
| NotI | GCGGCCGC | 1 cut(s) | 15 |
| PdmI | GAANNNNTTC | 1 cut(s) | 213 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 193 |
| PkrI | GCNGC | 5 cut(s) | 16, 19, 53, 235, 238 |
| PpuMI | RGGWCCY | 1 cut(s) | 73 |
| Psp5II | RGGWCCY | 1 cut(s) | 73 |
| Psp6I | CCWGG | 2 cut(s) | 26, 192 |
| PspGI | CCWGG | 2 cut(s) | 26, 192 |
| PspN4I | GGNNCC | 1 cut(s) | 144 |
| PspPI | GGNCC | 4 cut(s) | 73, 103, 124, 280 |
| PspPPI | RGGWCCY | 1 cut(s) | 73 |
| SacII | CCGCGG | 1 cut(s) | 15 |
| SaqAI | TTAA | 1 cut(s) | 164 |
| SatI | GCNGC | 5 cut(s) | 15, 18, 52, 234, 237 |
| Sau96I | GGNCC | 4 cut(s) | 73, 103, 124, 280 |
| ScrFI | CCNGG | 2 cut(s) | 28, 194 |
| SduI | GDGCHC | 1 cut(s) | 267 |
| SetI | ASST | 6 cut(s) | 36, 42, 78, 163, 195, 251 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 23 |
| Sfr303I | CCGCGG | 1 cut(s) | 15 |
| SgrBI | CCGCGG | 1 cut(s) | 15 |
| SinI | GGWCC | 1 cut(s) | 73 |
| SmlI | CTYRAG | 1 cut(s) | 198 |
| SmoI | CTYRAG | 1 cut(s) | 198 |
| Sse9I | AATT | 1 cut(s) | 107 |
| SsiI | CCGC | 6 cut(s) | 12, 14, 18, 51, 224, 287 |
| SspMI | CTAG | 2 cut(s) | 173, 246 |
| StyD4I | CCNGG | 2 cut(s) | 26, 192 |
| StyI | CCWWGG | 1 cut(s) | 99 |
| TaaI | ACNGT | 1 cut(s) | 118 |
| TaqI | TCGA | 3 cut(s) | 93, 217, 292 |
| TasI | AATT | 1 cut(s) | 107 |
| TauI | GCSGC | 3 cut(s) | 17, 20, 54 |
| Tru1I | TTAA | 1 cut(s) | 164 |
| Tru9I | TTAA | 1 cut(s) | 164 |
| TseFI | GTSAC | 2 cut(s) | 112, 118 |
| TseI | GCWGC | 2 cut(s) | 233, 236 |
| Tsp45I | GTSAC | 2 cut(s) | 112, 118 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 193 |
| VpaK11BI | GGWCC | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 213 |
| XspI | CTAG | 2 cut(s) | 173, 246 |