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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 22 |
| Acc16I | TGCGCA | 1 cut(s) | 1476 |
| AccB1I | GGYRCC | 1 cut(s) | 415 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 121, 848 |
| AclWI | GGATC | 8 cut(s) | 47, 49, 62, 347, 1133, 1165, 1552, 1586 |
| AcoI | YGGCCR | 2 cut(s) | 850, 972 |
| AcuI | CTGAAG | 3 cut(s) | 86, 369, 1218 |
| AcyI | GRCGYC | 1 cut(s) | 435 |
| AfaI | GTAC | 4 cut(s) | 152, 191, 431, 1128 |
| AgsI | TTSAA | 3 cut(s) | 254, 680, 1619 |
| AjnI | CCWGG | 6 cut(s) | 437, 756, 1090, 1173, 1481, 1608 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 51, 83 |
| AluBI | AGCT | 6 cut(s) | 367, 845, 1112, 1231, 1426, 1490 |
| AluI | AGCT | 6 cut(s) | 367, 845, 1112, 1231, 1426, 1490 |
| Alw21I | GWGCWC | 1 cut(s) | 277 |
| Alw26I | GTCTC | 2 cut(s) | 8, 1563 |
| AlwI | GGATC | 8 cut(s) | 47, 49, 62, 347, 1133, 1165, 1552, 1586 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 848 |
| ApaI | GGGCCC | 1 cut(s) | 474 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 614, 646, 919, 951 |
| AspLEI | GCGC | 8 cut(s) | 300, 317, 511, 745, 827, 1012, 1477, 1516 |
| AsuC2I | CCSGG | 3 cut(s) | 270, 481, 1356 |
| AsuHPI | GGTGA | 8 cut(s) | 746, 886, 992, 1180, 1225, 1402, 1583, 1648 |
| AvaII | GGWCC | 4 cut(s) | 942, 1094, 1240, 1599 |
| AxyI | CCTNAGG | 1 cut(s) | 1257 |
| BaeGI | GKGCMC | 1 cut(s) | 474 |
| BalI | TGGCCA | 1 cut(s) | 852 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BanI | GGYRCC | 1 cut(s) | 415 |
| BanII | GRGCYC | 5 cut(s) | 474, 535, 751, 789, 888 |
| BbsI | GAAGAC | 2 cut(s) | 582, 1167 |
| Bbv12I | GWGCWC | 1 cut(s) | 277 |
| BccI | CCATC | 4 cut(s) | 647, 950, 1363, 1400 |
| BceAI | ACGGC | 2 cut(s) | 274, 1656 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 614, 648, 720, 754, 914, 948, 978, 1012 |
| BciT130I | CCWGG | 6 cut(s) | 439, 758, 1092, 1175, 1483, 1610 |
| BciVI | GTATCC | 1 cut(s) | 563 |
| BcnI | CCSGG | 3 cut(s) | 270, 481, 1356 |
| BcoDI | GTCTC | 2 cut(s) | 8, 1563 |
| BfaI | CTAG | 4 cut(s) | 18, 858, 1023, 1670 |
| BfmI | CTRYAG | 2 cut(s) | 283, 1430 |
| BfoI | RGCGCY | 1 cut(s) | 1013 |
| BfuI | GTATCC | 1 cut(s) | 563 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 399 |
| Bme1390I | CCNGG | 9 cut(s) | 270, 439, 481, 758, 1092, 1175, 1356, 1483, 1610 |
| Bme18I | GGWCC | 4 cut(s) | 942, 1094, 1240, 1599 |
| BmrFI | CCNGG | 9 cut(s) | 270, 439, 481, 758, 1092, 1175, 1356, 1483, 1610 |
| BmrI | ACTGGG | 1 cut(s) | 1407 |
| BmsI | GCATC | 5 cut(s) | 195, 694, 998, 1048, 1516 |
| BmuI | ACTGGG | 1 cut(s) | 1407 |
| BpiI | GAAGAC | 2 cut(s) | 582, 1167 |
| BpmI | CTGGAG | 1 cut(s) | 711 |
| Bpu10I | CCTNAGC | 4 cut(s) | 534, 762, 1302, 1491 |
| BpuEI | CTTGAG | 1 cut(s) | 1670 |
| BpuMI | CCSGG | 3 cut(s) | 270, 481, 1356 |
| Bsa29I | ATCGAT | 1 cut(s) | 1155 |
| BsaHI | GRCGYC | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 2 cut(s) | 549, 1014 |
| BsaWI | WCCGGW | 1 cut(s) | 1078 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1197, 1227 |
| Bse118I | RCCGGY | 1 cut(s) | 939 |
| Bse1I | ACTGG | 4 cut(s) | 584, 853, 1323, 1402 |
| Bse21I | CCTNAGG | 1 cut(s) | 1257 |
| BseBI | CCWGG | 6 cut(s) | 439, 758, 1092, 1175, 1483, 1610 |
| BseCI | ATCGAT | 1 cut(s) | 1155 |
| BseDI | CCNNGG | 2 cut(s) | 549, 1014 |
| BseGI | GGATG | 5 cut(s) | 155, 205, 405, 625, 709 |
| BseNI | ACTGG | 4 cut(s) | 584, 853, 1323, 1402 |
| BseRI | GAGGAG | 3 cut(s) | 153, 267, 714 |
| BseSI | GKGCMC | 1 cut(s) | 474 |
| BseX3I | CGGCCG | 1 cut(s) | 972 |
| BseYI | CCCAGC | 2 cut(s) | 717, 841 |
| BsgI | GTGCAG | 1 cut(s) | 1103 |
| Bsh1285I | CGRYCG | 1 cut(s) | 975 |
| BshNI | GGYRCC | 1 cut(s) | 415 |
| BshVI | ATCGAT | 1 cut(s) | 1155 |
| BsiEI | CGRYCG | 1 cut(s) | 975 |
| BsiHKAI | GWGCWC | 1 cut(s) | 277 |
| BsiSI | CCGG | 5 cut(s) | 270, 480, 940, 1079, 1356 |
| BslFI | GGGAC | 2 cut(s) | 1226, 1414 |
| BsmAI | GTCTC | 2 cut(s) | 8, 1563 |
| BsmFI | GGGAC | 2 cut(s) | 1226, 1414 |
| BsmI | GAATGC | 1 cut(s) | 1222 |
| Bsp120I | GGGCCC | 1 cut(s) | 470 |
| Bsp1286I | GDGCHC | 6 cut(s) | 277, 474, 535, 751, 789, 888 |
| Bsp68I | TCGCGA | 1 cut(s) | 1536 |
| BspDI | ATCGAT | 1 cut(s) | 1155 |
| BspPI | GGATC | 8 cut(s) | 47, 49, 62, 347, 1133, 1165, 1552, 1586 |
| BspQI | GCTCTTC | 1 cut(s) | 973 |
| BspT107I | GGYRCC | 1 cut(s) | 415 |
| BsrFI | RCCGGY | 1 cut(s) | 939 |
| BsrI | ACTGG | 4 cut(s) | 584, 853, 1323, 1402 |
| BssAI | RCCGGY | 1 cut(s) | 939 |
| BssECI | CCNNGG | 2 cut(s) | 549, 1014 |
| BssNI | GRCGYC | 1 cut(s) | 435 |
| Bst2UI | CCWGG | 6 cut(s) | 439, 758, 1092, 1175, 1483, 1610 |
| Bst4CI | ACNGT | 3 cut(s) | 287, 874, 931 |
| Bst6I | CTCTTC | 1 cut(s) | 973 |
| BstACI | GRCGYC | 1 cut(s) | 435 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 833, 1115 |
| BstDSI | CCRYGG | 2 cut(s) | 549, 1014 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 794 |
| BstF5I | GGATG | 5 cut(s) | 155, 205, 405, 625, 709 |
| BstH2I | RGCGCY | 1 cut(s) | 1013 |
| BstHHI | GCGC | 8 cut(s) | 300, 317, 511, 745, 827, 1012, 1477, 1516 |
| BstMAI | GTCTC | 2 cut(s) | 8, 1563 |
| BstMCI | CGRYCG | 1 cut(s) | 975 |
| BstNI | CCWGG | 6 cut(s) | 439, 758, 1092, 1175, 1483, 1610 |
| BstNSI | RCATGY | 1 cut(s) | 25 |
| BstSCI | CCNGG | 9 cut(s) | 268, 437, 479, 756, 1090, 1173, 1354, 1481, 1608 |
| BstSFI | CTRYAG | 2 cut(s) | 283, 1430 |
| BstSLI | GKGCMC | 1 cut(s) | 474 |
| BstV2I | GAAGAC | 2 cut(s) | 582, 1167 |
| BstX2I | RGATCY | 2 cut(s) | 39, 54 |
| BstYI | RGATCY | 2 cut(s) | 39, 54 |
| BstZI | CGGCCG | 1 cut(s) | 972 |
| Bsu15I | ATCGAT | 1 cut(s) | 1155 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1257 |
| BsuI | GTATCC | 1 cut(s) | 563 |
| BsuTUI | ATCGAT | 1 cut(s) | 1155 |
| BtgI | CCRYGG | 2 cut(s) | 549, 1014 |
| BtgZI | GCGATG | 2 cut(s) | 99, 1071 |
| BtsCI | GGATG | 5 cut(s) | 155, 205, 405, 625, 709 |
| BtsI | GCAGTG | 2 cut(s) | 1047, 1295 |
| BtsIMutI | CAGTG | 4 cut(s) | 292, 1047, 1295, 1395 |
| BtuMI | TCGCGA | 1 cut(s) | 1536 |
| CaiI | CAGNNNCTG | 1 cut(s) | 848 |
| CfoI | GCGC | 8 cut(s) | 300, 317, 511, 745, 827, 1012, 1477, 1516 |
| Cfr10I | RCCGGY | 1 cut(s) | 939 |
| ClaI | ATCGAT | 1 cut(s) | 1155 |
| CseI | GACGC | 1 cut(s) | 443 |
| Csp6I | GTAC | 4 cut(s) | 151, 190, 430, 1127 |
| CviAII | CATG | 6 cut(s) | 22, 1165, 1190, 1268, 1582, 1655 |
| CviQI | GTAC | 4 cut(s) | 151, 190, 430, 1127 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 22 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 22 |
| EaeI | YGGCCR | 2 cut(s) | 850, 972 |
| EagI | CGGCCG | 1 cut(s) | 972 |
| Eam1104I | CTCTTC | 1 cut(s) | 973 |
| EarI | CTCTTC | 1 cut(s) | 973 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| EclXI | CGGCCG | 1 cut(s) | 972 |
| Eco24I | GRGCYC | 5 cut(s) | 474, 535, 751, 789, 888 |
| Eco32I | GATATC | 2 cut(s) | 91, 334 |
| Eco47I | GGWCC | 4 cut(s) | 942, 1094, 1240, 1599 |
| Eco52I | CGGCCG | 1 cut(s) | 972 |
| Eco57I | CTGAAG | 3 cut(s) | 86, 369, 1218 |
| Eco81I | CCTNAGG | 1 cut(s) | 1257 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 794 |
| EcoO109I | RGGNCCY | 2 cut(s) | 471, 1507 |
| EcoRII | CCWGG | 6 cut(s) | 437, 756, 1090, 1173, 1481, 1608 |
| EcoRV | GATATC | 2 cut(s) | 91, 334 |
| EcoT38I | GRGCYC | 5 cut(s) | 474, 535, 751, 789, 888 |
| FaeI | CATG | 6 cut(s) | 25, 1168, 1193, 1271, 1585, 1658 |
| FaqI | GGGAC | 2 cut(s) | 1226, 1414 |
| FatI | CATG | 6 cut(s) | 21, 1164, 1189, 1267, 1581, 1654 |
| FauI | CCCGC | 1 cut(s) | 609 |
| FokI | GGATG | 5 cut(s) | 142, 212, 392, 632, 716 |
| FriOI | GRGCYC | 5 cut(s) | 474, 535, 751, 789, 888 |
| FspBI | CTAG | 4 cut(s) | 18, 858, 1023, 1670 |
| FspI | TGCGCA | 1 cut(s) | 1476 |
| GlaI | GCGC | 8 cut(s) | 299, 316, 510, 744, 826, 1011, 1476, 1515 |
| GsaI | CCCAGC | 2 cut(s) | 721, 845 |
| GsuI | CTGGAG | 1 cut(s) | 711 |
| HaeII | RGCGCY | 1 cut(s) | 1013 |
| HapII | CCGG | 5 cut(s) | 270, 480, 940, 1079, 1356 |
| HgaI | GACGC | 1 cut(s) | 443 |
| HhaI | GCGC | 8 cut(s) | 300, 317, 511, 745, 827, 1012, 1477, 1516 |
| Hin1I | GRCGYC | 1 cut(s) | 435 |
| Hin1II | CATG | 6 cut(s) | 25, 1168, 1193, 1271, 1585, 1658 |
| Hin6I | GCGC | 8 cut(s) | 298, 315, 509, 743, 825, 1010, 1475, 1514 |
| HinP1I | GCGC | 8 cut(s) | 298, 315, 509, 743, 825, 1010, 1475, 1514 |
| HinfI | GANTC | 8 cut(s) | 237, 465, 545, 610, 899, 1019, 1087, 1435 |
| HpaII | CCGG | 5 cut(s) | 270, 480, 940, 1079, 1356 |
| HphI | GGTGA | 8 cut(s) | 746, 886, 992, 1180, 1225, 1402, 1583, 1648 |
| Hpy166II | GTNNAC | 3 cut(s) | 553, 1410, 1449 |
| Hpy188I | TCNGA | 5 cut(s) | 172, 331, 700, 910, 1599 |
| Hpy8I | GTNNAC | 3 cut(s) | 553, 1410, 1449 |
| Hpy99I | CGWCG | 3 cut(s) | 437, 917, 939 |
| HpyAV | CCTTC | 9 cut(s) | 203, 275, 560, 800, 956, 977, 1202, 1320, 1604 |
| HpyCH4III | ACNGT | 3 cut(s) | 287, 874, 931 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 635, 671, 925, 1061, 1084, 1585 |
| Hsp92I | GRCGYC | 1 cut(s) | 435 |
| Hsp92II | CATG | 6 cut(s) | 25, 1168, 1193, 1271, 1585, 1658 |
| HspAI | GCGC | 8 cut(s) | 298, 315, 509, 743, 825, 1010, 1475, 1514 |
| LguI | GCTCTTC | 1 cut(s) | 973 |
| LmnI | GCTCC | 7 cut(s) | 280, 379, 883, 1177, 1198, 1291, 1297 |
| LweI | GCATC | 5 cut(s) | 195, 694, 998, 1048, 1516 |
| MaeI | CTAG | 4 cut(s) | 18, 858, 1023, 1670 |
| MaeIII | GTNAC | 2 cut(s) | 359, 1636 |
| MfeI | CAATTG | 4 cut(s) | 410, 601, 1064, 1625 |
| MflI | RGATCY | 2 cut(s) | 39, 54 |
| MhlI | GDGCHC | 6 cut(s) | 277, 474, 535, 751, 789, 888 |
| MlsI | TGGCCA | 1 cut(s) | 852 |
| MluCI | AATT | 7 cut(s) | 395, 410, 601, 828, 1064, 1074, 1625 |
| MluNI | TGGCCA | 1 cut(s) | 852 |
| MlyI | GAGTC | 3 cut(s) | 539, 604, 1096 |
| Mox20I | TGGCCA | 1 cut(s) | 852 |
| MscI | TGGCCA | 1 cut(s) | 852 |
| Msp20I | TGGCCA | 1 cut(s) | 852 |
| MspA1I | CMGCKG | 4 cut(s) | 312, 616, 845, 977 |
| MspI | CCGG | 5 cut(s) | 270, 480, 940, 1079, 1356 |
| MspR9I | CCNGG | 9 cut(s) | 270, 439, 481, 758, 1092, 1175, 1356, 1483, 1610 |
| MunI | CAATTG | 4 cut(s) | 410, 601, 1064, 1625 |
| Mva1269I | GAATGC | 1 cut(s) | 1222 |
| MvaI | CCWGG | 6 cut(s) | 439, 758, 1092, 1175, 1483, 1610 |
| NciI | CCSGG | 3 cut(s) | 270, 481, 1356 |
| NlaIII | CATG | 6 cut(s) | 25, 1168, 1193, 1271, 1585, 1658 |
| NmuCI | GTSAC | 1 cut(s) | 1636 |
| NruI | TCGCGA | 1 cut(s) | 1536 |
| NsbI | TGCGCA | 1 cut(s) | 1476 |
| NspI | RCATGY | 1 cut(s) | 25 |
| PciSI | GCTCTTC | 1 cut(s) | 973 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 829, 885, 1384 |
| PctI | GAATGC | 1 cut(s) | 1222 |
| PfeI | GAWTC | 5 cut(s) | 237, 465, 899, 1019, 1435 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 121, 848 |
| PfoI | TCCNGGA | 2 cut(s) | 1173, 1608 |
| PleI | GAGTC | 3 cut(s) | 539, 604, 1095 |
| PpsI | GAGTC | 3 cut(s) | 539, 604, 1095 |
| Psp6I | CCWGG | 6 cut(s) | 437, 756, 1090, 1173, 1481, 1608 |
| PspFI | CCCAGC | 2 cut(s) | 717, 841 |
| PspGI | CCWGG | 6 cut(s) | 437, 756, 1090, 1173, 1481, 1608 |
| PspOMI | GGGCCC | 1 cut(s) | 470 |
| PstNI | CAGNNNCTG | 1 cut(s) | 848 |
| PsuI | RGATCY | 2 cut(s) | 39, 54 |
| PvuII | CAGCTG | 1 cut(s) | 845 |
| RruI | TCGCGA | 1 cut(s) | 1536 |
| RsaI | GTAC | 4 cut(s) | 152, 191, 431, 1128 |
| RsaNI | GTAC | 4 cut(s) | 151, 190, 430, 1127 |
| SapI | GCTCTTC | 1 cut(s) | 973 |
| SchI | GAGTC | 3 cut(s) | 539, 604, 1096 |
| ScrFI | CCNGG | 9 cut(s) | 270, 439, 481, 758, 1092, 1175, 1356, 1483, 1610 |
| SduI | GDGCHC | 6 cut(s) | 277, 474, 535, 751, 789, 888 |
| SfaNI | GCATC | 5 cut(s) | 195, 694, 998, 1048, 1516 |
| SfcI | CTRYAG | 2 cut(s) | 283, 1430 |
| SinI | GGWCC | 4 cut(s) | 942, 1094, 1240, 1599 |
| SmlI | CTYRAG | 1 cut(s) | 1649 |
| SmoI | CTYRAG | 1 cut(s) | 1649 |
| Sse9I | AATT | 7 cut(s) | 395, 410, 601, 828, 1064, 1074, 1625 |
| SspI | AATATT | 1 cut(s) | 225 |
| SspMI | CTAG | 4 cut(s) | 18, 858, 1023, 1670 |
| StyD4I | CCNGG | 9 cut(s) | 268, 437, 479, 756, 1090, 1173, 1354, 1481, 1608 |
| TaaI | ACNGT | 3 cut(s) | 287, 874, 931 |
| TaqI | TCGA | 4 cut(s) | 12, 543, 1155, 1341 |
| TasI | AATT | 7 cut(s) | 395, 410, 601, 828, 1064, 1074, 1625 |
| TauI | GCSGC | 3 cut(s) | 84, 141, 977 |
| TfiI | GAWTC | 5 cut(s) | 237, 465, 899, 1019, 1435 |
| TscAI | CASTG | 4 cut(s) | 292, 1054, 1302, 1402 |
| TseFI | GTSAC | 1 cut(s) | 1636 |
| Tsp45I | GTSAC | 1 cut(s) | 1636 |
| TspDTI | ATGAA | 2 cut(s) | 1173, 1470 |
| TspGWI | ACGGA | 3 cut(s) | 538, 586, 1031 |
| TspRI | CASTG | 4 cut(s) | 292, 1054, 1302, 1402 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 121, 848 |
| VpaK11BI | GGWCC | 4 cut(s) | 942, 1094, 1240, 1599 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 794 |
| XbaI | TCTAGA | 1 cut(s) | 857 |
| XceI | RCATGY | 1 cut(s) | 25 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 764 |
| XspI | CTAG | 4 cut(s) | 18, 858, 1023, 1670 |