Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 216, 371 |
| AccB1I | GGYRCC | 2 cut(s) | 83, 269 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 425 |
| AccBSI | CCGCTC | 1 cut(s) | 442 |
| AccII | CGCG | 3 cut(s) | 342, 423, 698 |
| AccIII | TCCGGA | 1 cut(s) | 181 |
| AciI | CCGC | 7 cut(s) | 88, 167, 423, 440, 471, 690, 795 |
| AcoI | YGGCCR | 2 cut(s) | 302, 792 |
| AcsI | RAATTY | 2 cut(s) | 358, 722 |
| AdeI | CACNNNGTG | 1 cut(s) | 425 |
| AfaI | GTAC | 1 cut(s) | 759 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 114, 219, 425, 554 |
| AgeI | ACCGGT | 1 cut(s) | 816 |
| AjiI | CACGTC | 1 cut(s) | 148 |
| AjnI | CCWGG | 1 cut(s) | 247 |
| AluBI | AGCT | 1 cut(s) | 318 |
| AluI | AGCT | 1 cut(s) | 318 |
| Alw21I | GWGCWC | 1 cut(s) | 678 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| Ama87I | CYCGRG | 1 cut(s) | 808 |
| Aor13HI | TCCGGA | 1 cut(s) | 181 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| AoxI | GGCC | 8 cut(s) | 116, 158, 221, 302, 541, 609, 779, 792 |
| ApeKI | GCWGC | 2 cut(s) | 377, 446 |
| ApoI | RAATTY | 2 cut(s) | 358, 722 |
| AsiGI | ACCGGT | 1 cut(s) | 816 |
| AspLEI | GCGC | 2 cut(s) | 166, 629 |
| AspS9I | GGNCC | 4 cut(s) | 117, 222, 610, 780 |
| AsuHPI | GGTGA | 4 cut(s) | 505, 529, 583, 589 |
| AsuII | TTCGAA | 1 cut(s) | 238 |
| AvaI | CYCGRG | 1 cut(s) | 808 |
| BaeGI | GKGCMC | 2 cut(s) | 88, 274 |
| BanI | GGYRCC | 2 cut(s) | 83, 269 |
| BanII | GRGCYC | 1 cut(s) | 809 |
| Bbv12I | GWGCWC | 1 cut(s) | 678 |
| BbvI | GCAGC | 2 cut(s) | 389, 433 |
| BccI | CCATC | 8 cut(s) | 116, 150, 320, 542, 548, 557, 645, 771 |
| BceAI | ACGGC | 2 cut(s) | 289, 807 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 72, 176, 210 |
| BciT130I | CCWGG | 1 cut(s) | 249 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfaI | CTAG | 1 cut(s) | 823 |
| BfoI | RGCGCY | 2 cut(s) | 167, 630 |
| BfuAI | ACCTGC | 2 cut(s) | 216, 371 |
| BisI | GCNGC | 5 cut(s) | 167, 378, 440, 447, 795 |
| BlpI | GCTNAGC | 1 cut(s) | 319 |
| BlsI | GCNGC | 5 cut(s) | 168, 379, 441, 448, 796 |
| Bme1390I | CCNGG | 1 cut(s) | 249 |
| BmeT110I | CYCGRG | 1 cut(s) | 808 |
| BmgBI | CACGTC | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 4 cut(s) | 117, 222, 610, 780 |
| BmiI | GGNNCC | 5 cut(s) | 6, 73, 85, 271, 640 |
| BmrFI | CCNGG | 1 cut(s) | 249 |
| BmsI | GCATC | 1 cut(s) | 87 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 319 |
| Bpu14I | TTCGAA | 1 cut(s) | 238 |
| Bsa29I | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 1 cut(s) | 606 |
| BsaWI | WCCGGW | 2 cut(s) | 181, 816 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 623, 653 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 66, 67, 114, 219, 425, 554 |
| Bse118I | RCCGGY | 3 cut(s) | 539, 686, 816 |
| Bse1I | ACTGG | 3 cut(s) | 305, 374, 759 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseAI | TCCGGA | 1 cut(s) | 181 |
| BseBI | CCWGG | 1 cut(s) | 249 |
| BseCI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BseDI | CCNNGG | 1 cut(s) | 606 |
| BseGI | GGATG | 1 cut(s) | 108 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 114, 219, 425, 554 |
| BseNI | ACTGG | 3 cut(s) | 305, 374, 759 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BseSI | GKGCMC | 2 cut(s) | 88, 274 |
| BseX3I | CGGCCG | 1 cut(s) | 792 |
| BseXI | GCAGC | 2 cut(s) | 389, 433 |
| BsgI | GTGCAG | 1 cut(s) | 717 |
| Bsh1236I | CGCG | 3 cut(s) | 342, 423, 698 |
| Bsh1285I | CGRYCG | 2 cut(s) | 687, 795 |
| BshFI | GGCC | 8 cut(s) | 118, 160, 223, 304, 543, 611, 781, 794 |
| BshNI | GGYRCC | 2 cut(s) | 83, 269 |
| BshTI | ACCGGT | 1 cut(s) | 816 |
| BshVI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsiEI | CGRYCG | 2 cut(s) | 687, 795 |
| BsiHKAI | GWGCWC | 1 cut(s) | 678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 808 |
| BsiSI | CCGG | 4 cut(s) | 182, 540, 687, 817 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 114, 219, 425, 554 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| BsnI | GGCC | 8 cut(s) | 118, 160, 223, 304, 543, 611, 781, 794 |
| BsoBI | CYCGRG | 1 cut(s) | 808 |
| Bsp119I | TTCGAA | 1 cut(s) | 238 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 274, 678, 809 |
| Bsp13I | TCCGGA | 1 cut(s) | 181 |
| Bsp143I | GATC | 2 cut(s) | 28, 400 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 319 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspACI | CCGC | 7 cut(s) | 88, 167, 423, 440, 471, 690, 795 |
| BspANI | GGCC | 8 cut(s) | 118, 160, 223, 304, 543, 611, 781, 794 |
| BspDI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BspEI | TCCGGA | 1 cut(s) | 181 |
| BspFNI | CGCG | 3 cut(s) | 342, 423, 698 |
| BspLI | GGNNCC | 5 cut(s) | 6, 73, 85, 271, 640 |
| BspMI | ACCTGC | 2 cut(s) | 216, 371 |
| BspT104I | TTCGAA | 1 cut(s) | 238 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 269 |
| BsrBI | CCGCTC | 1 cut(s) | 442 |
| BsrFI | RCCGGY | 3 cut(s) | 539, 686, 816 |
| BsrI | ACTGG | 3 cut(s) | 305, 374, 759 |
| BssAI | RCCGGY | 3 cut(s) | 539, 686, 816 |
| BssECI | CCNNGG | 1 cut(s) | 606 |
| BssMI | GATC | 2 cut(s) | 28, 400 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 1 cut(s) | 249 |
| Bst4CI | ACNGT | 3 cut(s) | 575, 635, 668 |
| Bst6I | CTCTTC | 1 cut(s) | 773 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 819 |
| BstBI | TTCGAA | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 7 cut(s) | 88, 162, 221, 444, 545, 560, 748 |
| BstDEI | CTNAG | 2 cut(s) | 155, 319 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 217 |
| BstF5I | GGATG | 1 cut(s) | 108 |
| BstFNI | CGCG | 3 cut(s) | 342, 423, 698 |
| BstH2I | RGCGCY | 2 cut(s) | 167, 630 |
| BstHHI | GCGC | 2 cut(s) | 166, 629 |
| BstKTI | GATC | 2 cut(s) | 31, 403 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 2 cut(s) | 28, 400 |
| BstMCI | CGRYCG | 2 cut(s) | 687, 795 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 166, 420, 819 |
| BstNI | CCWGG | 1 cut(s) | 249 |
| BstSCI | CCNGG | 1 cut(s) | 247 |
| BstSLI | GKGCMC | 2 cut(s) | 88, 274 |
| BstUI | CGCG | 3 cut(s) | 342, 423, 698 |
| BstV1I | GCAGC | 2 cut(s) | 389, 433 |
| BstZI | CGGCCG | 1 cut(s) | 792 |
| Bsu15I | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BsuRI | GGCC | 8 cut(s) | 118, 160, 223, 304, 543, 611, 781, 794 |
| BsuTUI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtgZI | GCGATG | 1 cut(s) | 790 |
| BtrI | CACGTC | 1 cut(s) | 148 |
| BtsCI | GGATG | 1 cut(s) | 108 |
| BtsI | GCAGTG | 1 cut(s) | 804 |
| BtsIMutI | CAGTG | 5 cut(s) | 298, 367, 640, 752, 804 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| BveI | ACCTGC | 2 cut(s) | 216, 371 |
| Cac8I | GCNNGC | 7 cut(s) | 88, 162, 221, 444, 545, 560, 748 |
| CfoI | GCGC | 2 cut(s) | 166, 629 |
| Cfr10I | RCCGGY | 3 cut(s) | 539, 686, 816 |
| Cfr13I | GGNCC | 4 cut(s) | 117, 222, 610, 780 |
| ClaI | ATCGAT | 3 cut(s) | 27, 399, 552 |
| CseI | GACGC | 1 cut(s) | 197 |
| Csp6I | GTAC | 1 cut(s) | 758 |
| CspAI | ACCGGT | 1 cut(s) | 816 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 636, 671 |
| CviAII | CATG | 2 cut(s) | 607, 617 |
| CviQI | GTAC | 1 cut(s) | 758 |
| DdeI | CTNAG | 2 cut(s) | 155, 319 |
| DpnI | GATC | 2 cut(s) | 30, 402 |
| DpnII | GATC | 2 cut(s) | 28, 400 |
| DraIII | CACNNNGTG | 1 cut(s) | 425 |
| EaeI | YGGCCR | 2 cut(s) | 302, 792 |
| EagI | CGGCCG | 1 cut(s) | 792 |
| Eam1104I | CTCTTC | 1 cut(s) | 773 |
| EarI | CTCTTC | 1 cut(s) | 773 |
| EciI | GGCGGA | 1 cut(s) | 705 |
| EclXI | CGGCCG | 1 cut(s) | 792 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 1 cut(s) | 809 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| Eco52I | CGGCCG | 1 cut(s) | 792 |
| Eco88I | CYCGRG | 1 cut(s) | 808 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 217 |
| EcoO109I | RGGNCCY | 1 cut(s) | 117 |
| EcoRII | CCWGG | 1 cut(s) | 247 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT38I | GRGCYC | 1 cut(s) | 809 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 2 cut(s) | 610, 620 |
| FaiI | YATR | 5 cut(s) | 114, 393, 608, 618, 661 |
| FatI | CATG | 2 cut(s) | 606, 616 |
| FauI | CCCGC | 1 cut(s) | 95 |
| Fnu4HI | GCNGC | 5 cut(s) | 167, 378, 440, 447, 795 |
| FokI | GGATG | 1 cut(s) | 95 |
| FriOI | GRGCYC | 1 cut(s) | 809 |
| Fsp4HI | GCNGC | 5 cut(s) | 167, 378, 440, 447, 795 |
| FspBI | CTAG | 1 cut(s) | 823 |
| GlaI | GCGC | 2 cut(s) | 165, 628 |
| GluI | GCNGC | 5 cut(s) | 167, 378, 440, 447, 795 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeII | RGCGCY | 2 cut(s) | 167, 630 |
| HaeIII | GGCC | 8 cut(s) | 118, 160, 223, 304, 543, 611, 781, 794 |
| HapII | CCGG | 4 cut(s) | 182, 540, 687, 817 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 2 cut(s) | 166, 629 |
| Hin1II | CATG | 2 cut(s) | 610, 620 |
| Hin6I | GCGC | 2 cut(s) | 164, 627 |
| HinP1I | GCGC | 2 cut(s) | 164, 627 |
| HinfI | GANTC | 7 cut(s) | 173, 244, 277, 337, 584, 693, 765 |
| HpaII | CCGG | 4 cut(s) | 182, 540, 687, 817 |
| HphI | GGTGA | 4 cut(s) | 505, 529, 583, 589 |
| Hpy188I | TCNGA | 1 cut(s) | 152 |
| Hpy188III | TCNNGA | 5 cut(s) | 32, 182, 341, 463, 671 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 4 cut(s) | 234, 245, 425, 604 |
| HpyCH4III | ACNGT | 3 cut(s) | 575, 635, 668 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 3 cut(s) | 219, 734, 746 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 166, 420, 819 |
| HpyF3I | CTNAG | 2 cut(s) | 155, 319 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 2 cut(s) | 610, 620 |
| HspAI | GCGC | 2 cut(s) | 164, 627 |
| Kpn2I | TCCGGA | 1 cut(s) | 181 |
| Kzo9I | GATC | 2 cut(s) | 28, 400 |
| LmnI | GCTCC | 3 cut(s) | 10, 129, 644 |
| Lsp1109I | GCAGC | 2 cut(s) | 389, 433 |
| LweI | GCATC | 1 cut(s) | 87 |
| MaeI | CTAG | 1 cut(s) | 823 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MaeIII | GTNAC | 2 cut(s) | 589, 620 |
| MalI | GATC | 2 cut(s) | 30, 402 |
| MbiI | CCGCTC | 1 cut(s) | 442 |
| MboI | GATC | 2 cut(s) | 28, 400 |
| MboII | GAAGA | 4 cut(s) | 28, 47, 50, 760 |
| MhlI | GDGCHC | 4 cut(s) | 88, 274, 678, 809 |
| MluCI | AATT | 3 cut(s) | 358, 578, 722 |
| MlyI | GAGTC | 4 cut(s) | 167, 238, 578, 759 |
| MnlI | CCTC | 6 cut(s) | 115, 137, 223, 319, 610, 750 |
| MroI | TCCGGA | 1 cut(s) | 181 |
| MspI | CCGG | 4 cut(s) | 182, 540, 687, 817 |
| MspR9I | CCNGG | 1 cut(s) | 249 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 249 |
| MvnI | CGCG | 3 cut(s) | 342, 423, 698 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 166, 420, 819 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 2 cut(s) | 28, 400 |
| NlaIII | CATG | 2 cut(s) | 610, 620 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 73, 85, 271, 640 |
| NmuCI | GTSAC | 2 cut(s) | 589, 620 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| NspV | TTCGAA | 1 cut(s) | 238 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PfeI | GAWTC | 3 cut(s) | 277, 337, 693 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 425 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PinAI | ACCGGT | 1 cut(s) | 816 |
| PkrI | GCNGC | 5 cut(s) | 168, 379, 441, 448, 796 |
| PleI | GAGTC | 4 cut(s) | 167, 238, 578, 759 |
| PpsI | GAGTC | 4 cut(s) | 167, 238, 578, 759 |
| Psp6I | CCWGG | 1 cut(s) | 247 |
| PspGI | CCWGG | 1 cut(s) | 247 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 73, 85, 271, 640 |
| PspPI | GGNCC | 4 cut(s) | 117, 222, 610, 780 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 1 cut(s) | 759 |
| RsaNI | GTAC | 1 cut(s) | 758 |
| SatI | GCNGC | 5 cut(s) | 167, 378, 440, 447, 795 |
| Sau3AI | GATC | 2 cut(s) | 28, 400 |
| Sau96I | GGNCC | 4 cut(s) | 117, 222, 610, 780 |
| SchI | GAGTC | 4 cut(s) | 167, 238, 578, 759 |
| ScrFI | CCNGG | 1 cut(s) | 249 |
| SduI | GDGCHC | 4 cut(s) | 88, 274, 678, 809 |
| SetI | ASST | 8 cut(s) | 57, 107, 150, 210, 320, 385, 596, 602 |
| SfaNI | GCATC | 1 cut(s) | 87 |
| SfuI | TTCGAA | 1 cut(s) | 238 |
| Sse9I | AATT | 3 cut(s) | 358, 578, 722 |
| SsiI | CCGC | 7 cut(s) | 88, 167, 423, 440, 471, 690, 795 |
| SspMI | CTAG | 1 cut(s) | 823 |
| StyD4I | CCNGG | 1 cut(s) | 247 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 3 cut(s) | 575, 635, 668 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TaqI | TCGA | 7 cut(s) | 27, 238, 283, 399, 552, 602, 670 |
| TasI | AATT | 3 cut(s) | 358, 578, 722 |
| TauI | GCSGC | 3 cut(s) | 169, 442, 797 |
| TfiI | GAWTC | 3 cut(s) | 277, 337, 693 |
| TscAI | CASTG | 5 cut(s) | 305, 374, 640, 759, 804 |
| TseFI | GTSAC | 2 cut(s) | 589, 620 |
| TseI | GCWGC | 2 cut(s) | 377, 446 |
| Tsp45I | GTSAC | 2 cut(s) | 589, 620 |
| TspDTI | ATGAA | 1 cut(s) | 715 |
| TspRI | CASTG | 5 cut(s) | 305, 374, 640, 759, 804 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 425 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 217 |
| XapI | RAATTY | 2 cut(s) | 358, 722 |
| XspI | CTAG | 1 cut(s) | 823 |